LOCUS       NM_178918               4071 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus UTP15 small subunit processome component (Utp15),
            mRNA.
ACCESSION   NM_178918
VERSION     NM_178918.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4071)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC123056.4.
            
            On Nov 17, 2006 this sequence version replaced NM_178918.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK049186.1, BC065057.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               AC123056.4         154601-154718       c
            119-290             AC123056.4         152525-152696       c
            291-383             AC123056.4         151100-151192       c
            384-568             AC123056.4         150831-151015       c
            569-747             AC123056.4         149562-149740       c
            748-873             AC123056.4         148827-148952       c
            874-1009            AC123056.4         146645-146780       c
            1010-1094           AC123056.4         145370-145454       c
            1095-1244           AC123056.4         144471-144620       c
            1245-1346           AC123056.4         143655-143756       c
            1347-1480           AC123056.4         142511-142644       c
            1481-1539           AC123056.4         142298-142356       c
            1540-4071           AC123056.4         138571-141102       c
FEATURES             Location/Qualifiers
     source          1..4071
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 51.87 cM"
     gene            1..4071
                     /gene="Utp15"
                     /note="UTP15 small subunit processome component"
                     /db_xref="GeneID:105372"
                     /db_xref="MGI:MGI:2145443"
     exon            1..118
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            119..290
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     CDS             201..1787
                     /gene="Utp15"
                     /note="src-associated protein SAW; UTP15, U3 small
                     nucleolar ribonucleoprotein, homolog"
                     /codon_start=1
                     /product="U3 small nucleolar RNA-associated protein 15
                     homolog"
                     /protein_id="NP_849249.1"
                     /db_xref="CCDS:CCDS26712.1"
                     /db_xref="GeneID:105372"
                     /db_xref="MGI:MGI:2145443"
                     /translation="MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKV
                     DFSPQLPYNYAVTASSRIHIYGRYSQEPVKTFSRFKDTAYCATFRQDGQLLVAGSEDG
                     VVQLFDINGRAPLRQFEGHTKAVHTVDFTADNYHVVSGADDYTVKLWDIPNSKEILTF
                     KEHSDYVRCGCASKLNPDLFVTGSYDHTVKIFDARTNKNVLCVEHGQPVESVLLFPSG
                     GLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYS
                     TTSYKVVHSFDYAASILSLALSHQDETIVVGMTNGILSVKHRKSEAKKTSLPRRRRPA
                     YRTFIKGKNYLKQRDDIMVSRPAKKHLEGYDKDLKSFRVSQALDRVLEPKCVIRTPEV
                     TVSIIKELTRRGVLANALAGRDEKEVTRVLNFLIRNLSQPRFAPVLINAAEIIIDIYL
                     PVIGQSSVVDKKFIVLQELVEKEIDYQRELLETLGMMDMLFATMTRNDSDPVPEHVPA
                     ELPEEKTESPTQPSDTDKNS"
     exon            291..383
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            384..568
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            569..747
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            748..873
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1009
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1094
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1244
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1346
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1480
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..1539
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..4071
                     /gene="Utp15"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2790..2795
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp15"
                     /note="hexamer: AATAAA"
     polyA_site      2810
                     /gene="Utp15"
                     /note="major polyA site"
ORIGIN      
        1 ggactgtccg cgtgattttg agcgagtgct gcagagcggt atgctgtagg gagctggcga
       61 agtctgggga gtcgtcctgg ggatcggtgc ctcggtggac cctcggggcc ccgcggaggc
      121 ctgaggcaga gtcactgaag ttattgtgaa attagttcca gactcctgac cctaggataa
      181 cagcgcactt atatgaaacc atggccggct ataaacctgt agcgattcaa acatatcctg
      241 tacttggtga gaagatcacc caagacactc tgtactggaa caactataag acccctgttc
      301 agattaagga atttggtgca gtgtccaaag tagacttttc tcctcagctt ccatataact
      361 atgcagtcac agcttcttcg agaatccaca tttatggccg gtactctcaa gagcctgtaa
      421 aaaccttttc ccgttttaag gacacagcat attgtgcgac ttttcgacag gatggtcagt
      481 tgctcgttgc tggcagtgaa gatggtgtag ttcaactttt tgatataaat gggagggctc
      541 ccctcaggca gtttgaaggc cacacaaaag cagttcatac agtagatttt acagctgaca
      601 attatcatgt ggtctctgga gctgatgact atactgttaa attatgggat attccaaact
      661 ctaaagaaat cctgacattc aaagaacatt ctgattacgt gaggtgcggc tgtgccagca
      721 aactgaaccc agaccttttt gtaacaggat catacgatca tactgtgaag atattcgatg
      781 ctcggacaaa taagaatgtt ctctgtgtgg agcatgggca gccagtggag agtgtcctgc
      841 ttttcccctc aggagggctt ctggtgtctg caggaggccg ctatgttaaa gtctgggaca
      901 tgttaaaagg aggacagctg cttgtgtctt tgaaaaatca tcacaagact gtgacatgtt
      961 tgtgtctgag cagctctgga cagaggttac tctccggctc actggatagg aaagtgaaag
     1021 tctacagcac cacctcctac aaagtcgtcc acagctttga ctacgcagct tcaatcttga
     1081 gtctggcact ctctcatcaa gatgagacga tagttgtagg aatgaccaac ggaatactga
     1141 gtgttaaaca ccggaagtct gaagcaaaga agacgtctct tccgaggagg aggaggcctg
     1201 catatcgaac ctttattaaa ggaaaaaatt acttgaagca acgggatgac atcatggtca
     1261 gtaggccagc aaagaagcac ctagaggggt atgacaagga tctgaaaagc tttcgggtct
     1321 cacaggccct cgacagagtc ctggagccta aatgtgtgat aaggacccct gaggtgacag
     1381 tttccatcat aaaggagctg actcggagag gcgtccttgc caatgctctt gcaggtcggg
     1441 acgagaagga ggttacccgg gtccttaact ttttgataag gaatctgtct cagccgaggt
     1501 tcgcccctgt tttgattaat gcagctgaga tcatcatcga tatatattta cctgtgattg
     1561 gccagtcatc agtagttgat aaaaagttta tagtacttca agaacttgta gaaaaagaaa
     1621 ttgattacca aagagaactc ctagagacct tggggatgat ggacatgcta tttgctacca
     1681 tgacacggaa tgacagcgac cctgtgccgg agcatgtgcc cgctgaactc ccagaggaga
     1741 agacagagtc accaacgcag cccagcgaca cggacaagaa ctcctaactg ggtgttgttt
     1801 gactctatta tggagaagaa ggcagcttca gtacactcaa aggataatta agagaagttt
     1861 tatggaagag actggattaa ttaaaattgg gacataagta cctgtttcaa gatgtggttt
     1921 tccatgtatt gatttatttt atgttgcctt cagctagaag atcttagttg gcttggtcac
     1981 agtgtctgtt taccctggat gtgttaattc tgaccttaat ggagccaaaa tctctgttgc
     2041 cgtggggcct cgtggccctc tggagaggtt tccaagcgga cagagtcctg ccaagtgaac
     2101 agagccccgg ttttgtttcc tgcttctagc ctgggaaata ggaagagcaa acagcaacaa
     2161 caaagcatcc atcgctgtcc ccagtgtcct ggggagcttc ctgtcctctc gctggtcact
     2221 tcagagtctt gagtcatatg ccttcctcag ctgtttgtgg gactgtcttc caagtgtggc
     2281 ggatcactga atattgcccc tggaagtgcg tttagggtgt gatgagtctg ttttgtcacc
     2341 taaaaattgt gccctccacc agtgtgttct ttagccttgt gtgtccagag agctctgact
     2401 gaaccaattc ccgcccctca gcctgcttcc ttccttccgt cttcaccgtg ctttggttgt
     2461 cctctcctct atagtaaagg cctttcagcc tgcccatgtg ctttggcaaa gtgtatcatg
     2521 aatatgtaac cctccataac gattctctta tctgtccttc acatttcttt ttctctgtcc
     2581 ttcactttct gggtcagact caaacggcag cagtttgctt tgagaattta tgtttctgaa
     2641 agttcattgt aaattatatt tttttataaa gagattcttt tcttcttggc tttctgaggt
     2701 gttcctgatg ggcagtcagt ggctttgacc agcatactga ctgcacggct gtgacttccg
     2761 tgccttcctt cagtgacccc acttaggtta ataaatgtct ggtgatggaa tcccgagccg
     2821 aggatgtcct tgggggaaag attgtaatga ttctgcctca taatctcact tgtgtaaatt
     2881 tagggttttt tttttttttc tttttcccaa gacagggttt ttctgtgtag cttttgctgt
     2941 cttggaaatc actgtgacca gactggcttc gaactcagag acccacctgc ctttgcgttt
     3001 caagcgcagg aattaaaggt gtgttccacc atccaactaa ctgtaggttt tctgaaagca
     3061 caagggggta cagtaagact gttctgatgt gtacccatgt tcaacagtag gtacagcgtc
     3121 ctttcatgag ctgaagcagt tctgcagtac agcggcttgt gaggtgcctg gcttgctttg
     3181 agtaaggaat tatttaaata actcttgtta ggtatgcaga gagcttacag gagcagttgc
     3241 gagtctgctg gaagctgtag ctgccatctc ctgtgcacct ctgcagcgtt tcttggatca
     3301 tttcattctt gtcatagcta tccaagggtt gaatcattct cttatagaac cctgaattaa
     3361 ttaaagtcac tcacctctcc acgctgctgt ccttatcatt cctgcactgg gctggtctgt
     3421 gagggcctta actactcgtt ccctttgaca gacgagagtg ctgcagctcc tgtaaggaat
     3481 gtgtagtaat tacaaaccct taaaaggacc agggacctca gagtcctcaa tgtagttgtg
     3541 ttcaggagtg ggcttttgtt ttgtttttta gtgacaggct tctccaggta accctggctg
     3601 tcctggaatt cactatgtag actgggctgg cctcgaactc acagagatcc acatgcctcc
     3661 cagccttcca agcgctggga gttaaaggtg tgcaccacca cagctcagga gttgttttta
     3721 tattccctga aactattacc tgctatgtga agtgttttaa cacaataaca tgtttcaata
     3781 tataatgttg gctttaagag tcaaatgcct aatcattttt agatttgtga ttttaagttg
     3841 ggaagtattt tatactttac tattgatgta aaaataatga attgttgctg ggaactagtc
     3901 atttttgttt aatttattat gttaattcag atttctacat atggaaaagg attgcttgtt
     3961 tccagtcaaa tttcttaaat gtctgtgctc ttaagttgct gaagcaactg atgttaaatg
     4021 ggaccattag aaacactgct gatttaactt aaatgaattt tgccaaatat t
//
