LOCUS       NM_028276               2431 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus UTP14A small subunit processome component (Utp14a),
            mRNA.
ACCESSION   NM_028276 XM_135857
VERSION     NM_028276.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2431)
  AUTHORS   Kazi,S., Castaneda,J.M., Savolainen,A., Xu,Y., Liu,N., Qiao,H.,
            Ramirez-Solis,R., Nozawa,K., Yu,Z., Matzuk,M.M. and
            Prunskaite-Hyyrylainen,R.
  TITLE     MRNIP interacts with sex body chromatin to support meiotic
            progression, spermatogenesis, and male fertility in mice
  JOURNAL   FASEB J 36 (9), e22479 (2022)
   PUBMED   35920200
REFERENCE   2  (bases 1 to 2431)
  AUTHORS   Boneberg,F.M., Brandmann,T., Kobel,L., van den Heuvel,J.,
            Bargsten,K., Bammert,L., Kutay,U. and Jinek,M.
  TITLE     Molecular mechanism of the RNA helicase DHX37 and its activation by
            UTP14A in ribosome biogenesis
  JOURNAL   RNA 25 (6), 685-701 (2019)
   PUBMED   30910870
  REMARK    GeneRIF: The results shed light on the mechanism of DHX37 and the
            function of UTP14A in controlling its recruitment and activity
            during ribosome biogenesis.
            Erratum:[RNA. 2019 Nov;25(11):1576. doi: 10.1261/rna.072900.119..
            PMID: 31619564]
REFERENCE   3  (bases 1 to 2431)
  AUTHORS   Rohozinski,J. and Bishop,C.E.
  TITLE     The mouse juvenile spermatogonial depletion (jsd) phenotype is due
            to a mutation in the X-derived retrogene, mUtp14b
  JOURNAL   Proc Natl Acad Sci U S A 101 (32), 11695-11700 (2004)
   PUBMED   15289605
REFERENCE   4  (bases 1 to 2431)
  AUTHORS   Bradley,J., Baltus,A., Skaletsky,H., Royce-Tolland,M., Dewar,K. and
            Page,D.C.
  TITLE     An X-to-autosome retrogene is required for spermatogenesis in mice
  JOURNAL   Nat Genet 36 (8), 872-876 (2004)
   PUBMED   15258580
REFERENCE   5  (bases 1 to 2431)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK172924.1.
            
            On Sep 5, 2004 this sequence version replaced XM_135857.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK172924.1, AK134784.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849390
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2431
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 25.59 cM"
     gene            1..2431
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /note="UTP14A small subunit processome component"
                     /db_xref="GeneID:72554"
                     /db_xref="MGI:MGI:1919804"
     exon            1..35
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..2313
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /note="UTP14, U3 small nucleolar ribonucleoprotein,
                     homolog A; jsd-like X-linked protein; juvenile
                     spermatogonial depletion-like X-linked protein"
                     /codon_start=1
                     /product="U3 small nucleolar RNA-associated protein 14
                     homolog A"
                     /protein_id="NP_082552.1"
                     /db_xref="CCDS:CCDS30107.1"
                     /db_xref="GeneID:72554"
                     /db_xref="MGI:MGI:1919804"
                     /translation="MNSIKATKGLLALSQQDDLMDLTSNYPLSASEDEGDSDGERKHQ
                     KLLEAIGSLSGKNRWKLPERSEAGLKVSEFNVSSEGSGEKLALSDLLGPLKPSSSLAA
                     VKKQLSRVKSKKTLELPLHKREVEQIHREVAFSKTSQTLSKWDSVVQKNREAEQLVFP
                     LEKEPSSFAPMEHVFREWKARTPLEQEVFNLLHKNKQPVTDPLLTPVEKASLKAMSLE
                     EAKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVKKGKAKKALKDFEQLRKVDP
                     DAALEELEKMEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELT
                     QKLQVVSESEEEGGADEEEALVPDIVNEVQKTADGPNPWMLRSCSRDAKENEIQADSE
                     QLPESAAHEFPENEENDKPVAEEDELLKELEKRRSLRKRSELNQAAEPLGNQETKDST
                     SQEVLSELRALSKKLSKENHLSKKQKKSPAKAVDLVWEEEPAPEEDEPLLLQRPERMR
                     TLEELEELGKEDSLPNKERPRPSVEGEQVRRNPQNHSKGKNKKEQMISLQNLLTTRTP
                     SVTSLALPTTVEELEDEGARDQKQMIKEAFAGDDVIKEFLKEKREAIQANKPKAVDLT
                     LPGWGEWGGMNLKPSARKRRRFLIKAPEGPPRKDKNLPNVIISEKRNIHAAAHQVRVL
                     PYPFTHHQQFERTIQNPIGSTWNTQRAFQKLTAPKVVTKPGHIIKPITAEDVDCRSSP
                     RSDVPVMQSNPKQHSKHQKQRKKSSIG"
     exon            36..111
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            112..182
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            183..247
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            248..390
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            391..546
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            547..666
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            667..761
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            762..885
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            886..963
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1351
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            1352..1749
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            1750..1943
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            1944..2043
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
     exon            2044..2431
                     /gene="Utp14a"
                     /gene_synonym="2700066J21Rik; JsdX; mKIAA0266; NY-CO-16;
                     SDCCAG16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgacagcga tgaactctat caaagctacg aagggccttc tggctttgag ccagcaggat
       61 gatctaatgg atttgacaag caactacccc ttgagtgcca gtgaagatga gggggacagt
      121 gatggagaaa gaaagcatca aaaacttctg gaagcaattg gttcccttag tggaaaaaat
      181 aggtggaaat tgcctgagag atctgaggct ggtctaaaag tgtctgagtt taatgttagt
      241 tctgaaggat ctggagaaaa attggccctt tctgatctgc ttggacctct taaaccttca
      301 tcatcattgg ctgctgtcaa aaagcaactg agtagagtca aatcgaagaa gactctggaa
      361 ttacctcttc acaaaagaga ggttgaacag atccacagag aagtggcatt cagtaaaact
      421 tcacaaaccc tctccaaatg ggattctgtt gttcagaaga accgggaagc agagcagctg
      481 gtttttcctc tagagaagga gccatcttct tttgctccca tggaacatgt gtttcgtgag
      541 tggaaggcga gaactccact ggaacaggaa gtttttaacc tcctccataa gaacaaacag
      601 ccagtgacag accctttact gactcctgtg gaaaaggcct ccctcaaagc catgagcctg
      661 gaagaggcta agattcgcag agcagagctt cagagggccc gagctctgca gtcctactat
      721 gaagccaggg ctcgaagaat gaagaaaatc aaaagtaaaa aataccacaa aattgtgaag
      781 aagggaaagg ccaagaaagc cctaaaagat tttgagcagc tgaggaaagt tgacccagat
      841 gctgcattgg aagaactgga aaaaatggaa aaagccagaa tgatggagcg aatgagcctt
      901 aagcatcaaa acagtgggaa atgggccaag tcaaaggcca ttatggcaaa atatgacctg
      961 gaggcccgcc aagctatgca agagcagttg gctaagaaca aggaactgac ccagaagctg
     1021 caagttgtgt cagagagtga ggaagaggga ggtgctgacg aggaagaagc cctcgttcct
     1081 gacatagtga atgaggtaca gaagacggct gatggaccca atccgtggat gctcaggagt
     1141 tgcagtcgtg atgcaaaaga aaatgagatc caggctgact ctgaacagct gcctgagtct
     1201 gcagcccatg agtttcctga aaatgaggaa aatgacaaac cagtggcaga ggaagatgag
     1261 ttgttgaagg aattggagaa aaggagatcc cttaggaaaa gatctgagct caaccaggct
     1321 gctgagccac tgggtaacca agaaacaaaa gattctacca gccaggaggt attatctgaa
     1381 ttgagggcat tatctaagaa actcagtaag gaaaaccatc tatctaagaa acaaaaaaag
     1441 agtccagcaa aggctgttga cctggtctgg gaagaggaac ctgccccaga ggaagatgag
     1501 cctctcttgc tgcagaggcc agagagaatg cgaactctgg aggaactaga agagctaggt
     1561 aaagaggaca gccttccaaa taaggagcgc cctagacctt cagtagaagg ggagcaggtg
     1621 aggaggaacc cacagaatca ctccaagggg aagaacaaga aggaacaaat gatcagtcta
     1681 cagaacctcc tgactacaag aactccctct gtgacgtcac tggcgcttcc gacaacagta
     1741 gaggagttgg aagatgaagg ggcaagagac caaaagcaaa tgataaagga agcttttgct
     1801 ggggatgatg tcatcaaaga gttcctaaaa gagaagagag aagctatcca ggccaataag
     1861 ccaaaggctg tggatctgac cttacctggc tggggagagt ggggcgggat gaacctgaag
     1921 cccagcgcca ggaaaagacg ccggtttctt attaaagccc ctgaggggcc tccaagaaaa
     1981 gataagaatt tgcccaatgt gattatcagt gagaagcgaa acatccatgc ggcagctcac
     2041 caggtgcggg tccttccata tccgttcacc caccatcagc aatttgaaag gaccatccag
     2101 aatcctatag gatccacatg gaacacccag agagcattcc aaaagctgac tgctcccaag
     2161 gtcgttacca agccaggcca tattatcaaa cccataacag cagaggatgt ggattgccga
     2221 tcttccccaa ggtctgacgt gcctgtcatg cagagcaatc caaaacaaca ctccaaacat
     2281 caaaaacaac ggaagaaaag ctctataggt tgaaatatct gaggagtgtc ctctgcatgg
     2341 tctatgctgc aagatgaatt ccaaaactgg tttaacactg tgtgtgtagt taagccatat
     2401 ctgagaaata aaggcatttt tttttacctt t
//
