LOCUS       NM_026031               2383 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus UTP11 small subunit processome component (Utp11),
            transcript variant 1, mRNA.
ACCESSION   NM_026031
VERSION     NM_026031.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606907.10.
            
            On Mar 29, 2023 this sequence version replaced NM_026031.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.2067863.1, AK147113.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-161               AL606907.10        66500-66660
            162-223             AL606907.10        73950-74011
            224-326             AL606907.10        76245-76347
            327-440             AL606907.10        76752-76865
            441-534             AL606907.10        77594-77687
            535-665             AL606907.10        77777-77907
            666-776             AL606907.10        80288-80398
            777-2383            AL606907.10        81114-82720
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 57.87 cM"
     gene            1..2383
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /note="UTP11 small subunit processome component"
                     /db_xref="GeneID:67205"
                     /db_xref="MGI:MGI:1914455"
     exon            1..161
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..860
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /note="isoform a is encoded by transcript variant 1;
                     probable U3 small nucleolar RNA-associated protein 11;
                     UTP11-like protein; U3 snoRNA-associated protein 11;
                     UTP11-like, U3 small nucleolar ribonucleoprotein"
                     /codon_start=1
                     /product="probable U3 small nucleolar RNA-associated
                     protein 11 isoform a"
                     /protein_id="NP_080307.1"
                     /db_xref="CCDS:CCDS18623.1"
                     /db_xref="GeneID:67205"
                     /db_xref="MGI:MGI:1914455"
                     /translation="MSAAFRKAAKTRQREHRERSQPGFRKRLGLLEKKKDYKLRANDY
                     HKKQDFLRALRKKALEKNPDEFYYKMTRAKLQDGVHIFKENKEEVTAEQLKLMRTQDI
                     KYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFFFDTKKEVERFDVATHLQTAPE
                     LVDRVYNRPRIETLQKERVKGATPQTGLKRIAKERQKQYDCLTQRIEREKQLFVVAQK
                     IQTRKDLMDKTQKVKVKKETVNSPAIYRFQTRRKR"
     exon            162..223
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     exon            224..326
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     exon            327..440
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     exon            441..534
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     exon            535..665
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     exon            666..776
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     exon            777..2383
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      954
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /note="major polyA site"
     polyA_site      1169
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
     regulatory      1502..1507
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /note="hexamer: AGTAAA"
     polyA_site      1531
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
     regulatory      1583..1588
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /note="hexamer: TATAAA"
     polyA_site      1607
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
     regulatory      2360..2365
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
                     /note="hexamer: ATTAAA"
     polyA_site      2383
                     /gene="Utp11"
                     /gene_synonym="2700082D03Rik; CGI-94; Cgi94; Utp11l"
ORIGIN      
        1 gtcttgggcc tgcttccggt gtcttggcgg acgcggcggg gtgggtagtg ctgtcgtggt
       61 ggtggagttt gctgagcatt tcctagacct cagtaggcat gtcggcggct tttcgcaagg
      121 cagccaagac ccggcagcgg gaacaccgag aacgaagcca gcctggcttt cgaaaacgcc
      181 tgggtttgct ggagaaaaag aaagattaca aacttcgtgc aaatgactat cataaaaaac
      241 aagatttcct cagagctctc cggaagaagg ctcttgaaaa aaacccagat gaattctact
      301 ataaaatgac tcgggccaag ctccaggatg gagttcacat tttcaaagag aacaaggaag
      361 aagtgacagc agagcagctg aagctcatga gaactcagga catcaagtac attgagatga
      421 aaagagttgc agaggcgaag aaaattgaaa gattgaaatc agagctccat ctgctggatt
      481 tccaggggaa gcaacagaag aagcacgtgt tcttttttga caccaaaaag gaagttgaac
      541 ggtttgatgt tgcaactcac ttgcagacgg ccccagaatt agttgacagg gtctacaata
      601 gaccccggat agagacctta cagaaggaga gagtgaaagg agccacccct cagactggac
      661 tcaagcggat agccaaggaa cgacagaagc agtatgactg tttgacgcag cgcatcgagc
      721 gggagaagca gctgttcgtt gttgcccaga aaatccagac acgcaaagac ctcatggata
      781 aaactcagaa ggtgaaggtg aagaaagaaa cagtgaactc cccagctatt tacagattcc
      841 agactcgccg aaaacgttga tgggttaaaa ttaagcctca gcattctgta tcgaaaagaa
      901 ttattatctt ttcctcctgt cttttgtaat aacttcagat tttattaatt caaatggctt
      961 ggtcttcctg ttttgtaatc atgacttatt ttcgacctga gacttgatgt ctttctatga
     1021 aaatagtaaa gcagccaggc agtggtccca gcactcggga ggcagaggca ggcggatttc
     1081 tgagttcgag gccagcctgg tctacagagt gagttccagg acagccaggg gtatacagag
     1141 aaaccctgtc tccaaaaacc aaaaagaaag aagaaagaaa gaaagaaaga aagaaagaaa
     1201 gaaagaaaga aagaaagaaa gaaggaaaat gagtaaagtc ccttcctaga atcattattt
     1261 ctgtgttgat gattgaatct catacatata atactcattt gtccctcgga gagttatata
     1321 atctcctata acaaagtaga aaatagatga acacatttcc ttctcagtat tgaagaacag
     1381 tgtatttatc cctagcagga gctagggcta ctgatgcgag cagctgtgaa gggcaggttt
     1441 atgttcacca tttgggagag ctatacatcg gtttttgttt atgttttgtc attctcctta
     1501 tagtaaattt tacattctaa tttttaatta actcattagc tctattctat ttttataaca
     1561 ttattgaatt tttcaaaagt aatataaaag catagtagaa agtaaaatcc ttgtgtgtgt
     1621 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgc gcgcgcgcgc gcgcgcgcgc
     1681 gcacgtgcag tggtttgtgt ggaggccatg gggctgccgc agagtcatcc cctagagtaa
     1741 gtccaccttg ttttcataca ctgtctcact ggtctccagc tcactgatga ggtcgcctgc
     1801 ctgtgagcct cagggaccca tctgtctctg cctcccaagt gctgggattg caagtcagat
     1861 gacaacttag atttggttct tcttccttcc actgtgaggt tccagaactc aaacctggtt
     1921 gtcaggcttg gaggcaagca ctctcacctg ctgagccatc ctttcagctc ccacgcttgg
     1981 cttttaaggt gtgggttcta gagctgggca gtggtgggac acatctttaa ccccagcact
     2041 tgggaggcag gagtaagcag gtcagtgcta gcctggtcta cagagttgag ttccaggaca
     2101 gcctgggcta cgcagagaaa ccctgtctcc aataaacaaa acaaaaacaa caaaaatgtg
     2161 gattctggga gtcaaagtta aattcttatg tttgctcagc agctgaaccg gaagttttgt
     2221 ttgttttttg agatgggatc tcattgtgcc ctggctgacc taaaatttgc tgtgtagcta
     2281 aggatgactt tgaacttgat tgttctggct ggaattacag acacgccaaa aacacctggc
     2341 tgagcaatct gtcttaagaa ttaaatgttt tgtatagatg gga
//
