LOCUS       XM_011243484            5473 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ubiquitin specific peptidase 44 (Usp44),
            transcript variant X5, mRNA.
ACCESSION   XM_011243484
VERSION     XM_011243484.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011243484.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5473
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..5473
                     /gene="Usp44"
                     /gene_synonym="E430004F17Rik"
                     /note="ubiquitin specific peptidase 44; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 7 ESTs, 1049 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:327799"
                     /db_xref="MGI:MGI:3045318"
     CDS             549..2684
                     /gene="Usp44"
                     /gene_synonym="E430004F17Rik"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 44 isoform
                     X1"
                     /protein_id="XP_011241786.1"
                     /db_xref="GeneID:327799"
                     /db_xref="MGI:MGI:3045318"
                     /translation="MDRCKHVEQLQLAQGHSILDPQKWYCMVCNTTESIWACLSCSHV
                     ACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYVLNDNAAGDLKSLRSTLSTI
                     KSKKYPCVVPSDSVLHPVDAQDRVYSLLDGTQSLPGNEDPTCAALWHRRRVLMGKAFR
                     TWFEQSAIGRKGQEPTQERMVAKREAKRRQQQELEQQMKAELESTPPRKSLRLQGSSE
                     EAATIEIVPVRAPPPPPASPAKDKAALPTSEDRTFKKVSDSLIKRRPMVTPGVTGLRN
                     LGNTCYMNSVLQVLSHLLIFRQCFLKLDLNQWLAVAASDKARSYKHSAVTEAAAQQMN
                     EGQEKEKGFVCSRHSGLSSGLSGGASKGRNMELIQPREPSSPYSSLCHELHILFQVMW
                     SGEWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQRELETTGTKLPALIP
                     TSQRRLIEQVLNVVNNIFHGQFLSQVTCLACDNKSDTIESFWDLSLEFPERYQCSGKD
                     AASQPCLVTDMLDKFTETEALEGKIYMCDHCNSKRRKFSSKSVVFTEAQKQLMICHLP
                     QVLRLHLKRFRWSGRNNREKIGVHVVFEETLNMEPYCCRETLNALRPECFLYNLSAVV
                     IHHGKGFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMEEVRKAQAYILFYTQRVTENG
                     HSKLLPPELLSNSQHPSKETDASSNEVLS"
ORIGIN      
        1 cagacgaaaa tggaaagctt tggatgaagg gagcctgccc tggtgagaag tctgaggact
       61 cagaaaggct ggtatgagga caatggcttc aacatgatcc actcagctca attttaaacc
      121 gatgctgtca cctggtaaac tctgtgctag gatcaagggt gtgcgctgct gtatccagtt
      181 ttaaacagga ttgaacatag tacctccaca ggacctggcg cttagcagaa gagttgcaac
      241 cggacgagtt tctacttagg aaacaaacat catttaccct ggattcgaag gccggaagca
      301 ccgaaagcct agcagacggt atcgtcctag acgataaaag gaccgacctc ttagtctaaa
      361 ggccaattcg gcgactgatt ttaaggacat aatagaattc tgtgctgacc ttatattgcc
      421 catagacaag ttgaggagtg atgcagaccg agaatcctcc aagacccagt tttcagatgc
      481 tcccggtgtt gtgaagagag gcccgtctgg attatgtgtt tcccagacag actagctacc
      541 tgctaacaat ggataggtgc aagcacgttg agcagttgca gcttgctcaa ggccattcca
      601 tcttggaccc tcagaaatgg tactgtatgg tctgcaacac aaccgagtcc atttgggctt
      661 gcctcagctg ttcccacgtc gcctgtggga agtacatcca agagcacgca ctgaagcact
      721 ttcaagaaag cagccatccc gttgccttcg aggtgaacga catgtacgct ttttgttatc
      781 tttgtaacga ttatgttcta aacgataacg cagccggaga cctgaagtca ctacggagta
      841 cactaagtac aatcaaaagt aaaaagtacc cctgtgtggt tccgagtgac tcggttttac
      901 atcctgtgga tgcacaggac cgtgtttact ccttactcga cggcacccaa tctctgcccg
      961 gaaacgagga tccaacgtgc gccgccctct ggcacaggag acgggtgctc atggggaaag
     1021 cctttcgaac ttggttcgaa cagtcagcaa ttggaaggaa agggcaagag ccaactcagg
     1081 agagaatggt agcaaaacga gaggcgaaga gaaggcagca gcaggagttg gagcagcaga
     1141 tgaaagccga gctggaaagc acacctccgc ggaagagttt acgcttacaa ggctcctcgg
     1201 aggaggcggc cacaatcgaa atcgtgccag tgcgggcacc gcccccacct cccgcatccc
     1261 cagcaaagga caaagccgcg ctacctactt cggaagacag gacttttaaa aaagtaagtg
     1321 actccttaat caaacgaagg cccatggtaa ctcctggtgt aaccggactg agaaacttag
     1381 gaaatacttg ctatatgaat tctgttcttc aagtgttgag tcatttactc atttttcgac
     1441 aatgtttttt aaagcttgac ctgaaccagt ggctggctgt ggctgccagc gataaggccc
     1501 gatcctataa gcactcagcc gtcacggagg cggcggcaca gcagatgaac gaagggcaag
     1561 agaaagagaa aggcttcgta tgctccagac attcgggttt atcctcaggc ctgagcggag
     1621 gggcctcaaa aggtcggaac atggagctta ttcagccaag ggagcccagt tccccgtaca
     1681 gttctctctg ccatgaattg catatcctgt tccaagtcat gtggtctgga gagtgggcct
     1741 tggtctcacc gtttgccatg cttcactccg tgtggaggct gatccctgct ttccgcggtt
     1801 acgcccagca ggatgctcag gaatttcttt gtgaacttct ggataagata caacgtgaac
     1861 tagagacaac cggaaccaag ttaccagccc tcatccccac ttcccaaagg agacttattg
     1921 agcaagttct gaatgtggtg aataacattt ttcacggaca atttcttagt caggttacat
     1981 gtcttgcttg tgacaacaaa tcagatacca tagaatcctt ctgggacttg tccctggagt
     2041 ttccagagag ataccagtgc agtgggaaag atgctgcctc ccagccgtgc ctggttactg
     2101 acatgttgga caaatttaca gaaacagaag ctttagaagg gaaaatctac atgtgtgacc
     2161 attgtaactc aaagcgtaga aagttttcgt caaaatcagt tgtattcaca gaagcccaga
     2221 agcagcttat gatatgccat ctacctcagg ttctcagact gcacctcaaa cggttcagat
     2281 ggtcaggacg taataaccga gagaagattg gtgttcatgt tgtctttgag gaaaccttaa
     2341 acatggagcc ttattgctgc agggagaccc tgaacgctct cagaccagag tgctttctct
     2401 ataatttatc tgctgtcgta attcaccatg gaaaaggatt tggctcagga cactacactg
     2461 cctactgcta caattccgaa ggagggttct gggtccactg caacgattcc aagctgagca
     2521 tgtgcacgat ggaagaagta cgcaaggccc aagcttatat cttattttat actcagcgag
     2581 ttactgagaa tggacattcg aaactcttgc ctcccgagct cctgtccaat agccagcacc
     2641 ccagtaagga gactgatgcc tcttctaatg aagtccttag ctgatccaga cagtgggctc
     2701 tcgttatctg tatatatcct ttttaaatgg gctgacctac gctgctgtgc ttcattgttt
     2761 ttattctgga attatgatca gtgcctgcta tgtttagaca ttgtgtattt aactaccaag
     2821 tttttctttt ctttttttac agagacaaac tataaatata tgtatatcaa ctataggcca
     2881 actaaacttt tttcaaatat tttgagtttt atacttttag tgtttacctc agactgttac
     2941 ctcttatatt ctgatgtctt aattgcctca aatcatgaat ttgtgcaatc tactaaagaa
     3001 attcaggtgg catcattata tatattatta ttatttaact tctgtagctg ttttctatac
     3061 agattctaac tccacgggga aggagacgct cgtcacagat tgtcttgctg actccagctc
     3121 ttccccgttg gaggtaaaca gattggaagt gagatactga agcatcacct agctccagtc
     3181 actcctgagg cttctacagg gctcggagta gatttaatgc agatactggt ctttcactcc
     3241 aaaatttatt gcttccataa ctgtccttta ttgagcacaa attcaaaatg aaaatagcag
     3301 atttacacat ggtatatact tcaatgaact ttggaactat gggcaatgaa aaaatagttc
     3361 taataaggca gtcacaaaat tttgaattta gcaaaccaat atattatgat acacaaatgt
     3421 agtttatctt gagaatgagt ttttacgttt aattttagat atcttaagta gttgagattt
     3481 atttctttat tttttatttt tagttcaaag gagtaagaca aatgcatagg ggcaaatgca
     3541 taggggcaga tgtttaaggc agagagaaga cagttcgagc atggcacctg ggctgttaca
     3601 tctaagatct tgtttttctc gaagtaccct aagcctgact cttgctagga ttatgtgacc
     3661 actgggaatt tctcagggcc ctggcccctt tttaaaaaca ctagaagtgg tctaaacttg
     3721 aattaactaa aagcaagaga gattcctttc gctgtgttct aaagaaagct ttccaggtct
     3781 tatggatgga gctctgctgc tgccatggcc atggccatgg ccaccgccac ccaacctgct
     3841 cagaaatggg gctccaccaa cccacagatc ccaaggaacc tgtgagccac tgggagaggt
     3901 ttttttttcc cccttcttcc taaagaaagt gacttaattt acagcttata tctaagccag
     3961 gaagagttat ctttagcaca gacttctgaa aggagtgtcg cctggggcag cttattaaca
     4021 aaccgcaaca aaaacacatc aaccgaagac agaatcctat gtgccaaaaa tacagctgga
     4081 gtaatatttg gagtgatatt aggtcactta cccaaagcgt atacaaattg ttgcatcagc
     4141 tgttaaatat acctcattaa agattcatgt gataaaagtt accaaatcta gcctttaatt
     4201 tcaagaacct tttttttttc tagaccaaca cattgtagca cctttttttt ttttactggc
     4261 atttaaaaga aacaaaacat taaactagca cacagcagac tgttgtactt cccactagat
     4321 tttgttgtga atctaagatt acactgaaaa aaaaaaaaac taaacaaaac ccaaatgatg
     4381 caaagaaact tcagtttctt attaaatacc tcagatctgc aaggtggaca cccacgcaaa
     4441 aaaccaacag tttaggctgt aaaataattt actaaaggca ctattgttaa ccatcacagg
     4501 aagacacatc actaaatgta acaatgactt taagggctac ataactacta agcaaacaac
     4561 aagtgttggt tttggctttg tgttgttttg gctttccttt ataaggccat actccttccg
     4621 gccactcagg acacaaggat gtctgctccc aacagtagta ctctgagata agtttggacc
     4681 ttacaaagag ggagactgca ggaaaggtct tagaaaaccc taaagtttat ttaggggtca
     4741 gttttcaata tcctgggctt agaggtcaag ctgctcaaaa accaagacca tgaatgcaga
     4801 acccaaggag gcagctggag ggcctgtgag tgtgtgagtt cacgtggagc ccctcagcac
     4861 caggaagaca cagctcacaa agtcaaaagt agccttcccg gaaaacttca agcagcccgt
     4921 ggtccagggc cctaagtcta cctttccttc agagacaatg tcaagcaaaa taaaaattga
     4981 tttagcattc cggaagcaat acagcattac tgtgtcaagg tatacacaaa ttaaggcttt
     5041 acctgggcaa gggacgaatt tggaactaag atggaccatt tctagcaaat catacaaaga
     5101 ttttaagcag ctaaatgatt attgggccca gcctaaagtc gaatgtgtct ttatgttcaa
     5161 attaacacac agtttatgaa aggtctcgaa cctcatctcc ttgagtaacc tgatgctggg
     5221 atctctaact tactggaggc cgtgatgttc agtgcttggc tcaggaagga aaaagcccaa
     5281 tcccaagata attgttctaa ttaggacaag attgaaactt cttttgcttg tggctttact
     5341 gttgatttgg ttttctaata tggaacacat atcctgtaaa tatgaaccct tgagggacat
     5401 ttactacagc aaggtttttc cagttggcac aaggtttttc catgatgctt aaatcatttt
     5461 aaatatgctt tta
//
