LOCUS       XM_011243482            5242 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ubiquitin specific peptidase 44 (Usp44),
            transcript variant X3, mRNA.
ACCESSION   XM_011243482
VERSION     XM_011243482.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011243482.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5242
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..5242
                     /gene="Usp44"
                     /gene_synonym="E430004F17Rik"
                     /note="ubiquitin specific peptidase 44; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 7 ESTs, 1049 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:327799"
                     /db_xref="MGI:MGI:3045318"
     CDS             318..2453
                     /gene="Usp44"
                     /gene_synonym="E430004F17Rik"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 44 isoform
                     X1"
                     /protein_id="XP_011241784.1"
                     /db_xref="GeneID:327799"
                     /db_xref="MGI:MGI:3045318"
                     /translation="MDRCKHVEQLQLAQGHSILDPQKWYCMVCNTTESIWACLSCSHV
                     ACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYVLNDNAAGDLKSLRSTLSTI
                     KSKKYPCVVPSDSVLHPVDAQDRVYSLLDGTQSLPGNEDPTCAALWHRRRVLMGKAFR
                     TWFEQSAIGRKGQEPTQERMVAKREAKRRQQQELEQQMKAELESTPPRKSLRLQGSSE
                     EAATIEIVPVRAPPPPPASPAKDKAALPTSEDRTFKKVSDSLIKRRPMVTPGVTGLRN
                     LGNTCYMNSVLQVLSHLLIFRQCFLKLDLNQWLAVAASDKARSYKHSAVTEAAAQQMN
                     EGQEKEKGFVCSRHSGLSSGLSGGASKGRNMELIQPREPSSPYSSLCHELHILFQVMW
                     SGEWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQRELETTGTKLPALIP
                     TSQRRLIEQVLNVVNNIFHGQFLSQVTCLACDNKSDTIESFWDLSLEFPERYQCSGKD
                     AASQPCLVTDMLDKFTETEALEGKIYMCDHCNSKRRKFSSKSVVFTEAQKQLMICHLP
                     QVLRLHLKRFRWSGRNNREKIGVHVVFEETLNMEPYCCRETLNALRPECFLYNLSAVV
                     IHHGKGFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMEEVRKAQAYILFYTQRVTENG
                     HSKLLPPELLSNSQHPSKETDASSNEVLS"
ORIGIN      
        1 tccttcctaa acagtccagt ggcttcaaca tgatccactc agctcaattt taaaccgatg
       61 ctgtcacctg gtaaactctg tgctaggatc aagggtgtgc gctgctgtat ccagttttaa
      121 acaggattga acatagtacc tccacaggac ctggcgctta gcagaattct gtgctgacct
      181 tatattgccc atagacaagt tgaggagtga tgcagaccga gaatcctcca agacccagtt
      241 ttcagatgct cccggtgttg tgaagagagg cccgtctgga ttatgtgttt cccagacaga
      301 ctagctacct gctaacaatg gataggtgca agcacgttga gcagttgcag cttgctcaag
      361 gccattccat cttggaccct cagaaatggt actgtatggt ctgcaacaca accgagtcca
      421 tttgggcttg cctcagctgt tcccacgtcg cctgtgggaa gtacatccaa gagcacgcac
      481 tgaagcactt tcaagaaagc agccatcccg ttgccttcga ggtgaacgac atgtacgctt
      541 tttgttatct ttgtaacgat tatgttctaa acgataacgc agccggagac ctgaagtcac
      601 tacggagtac actaagtaca atcaaaagta aaaagtaccc ctgtgtggtt ccgagtgact
      661 cggttttaca tcctgtggat gcacaggacc gtgtttactc cttactcgac ggcacccaat
      721 ctctgcccgg aaacgaggat ccaacgtgcg ccgccctctg gcacaggaga cgggtgctca
      781 tggggaaagc ctttcgaact tggttcgaac agtcagcaat tggaaggaaa gggcaagagc
      841 caactcagga gagaatggta gcaaaacgag aggcgaagag aaggcagcag caggagttgg
      901 agcagcagat gaaagccgag ctggaaagca cacctccgcg gaagagttta cgcttacaag
      961 gctcctcgga ggaggcggcc acaatcgaaa tcgtgccagt gcgggcaccg cccccacctc
     1021 ccgcatcccc agcaaaggac aaagccgcgc tacctacttc ggaagacagg acttttaaaa
     1081 aagtaagtga ctccttaatc aaacgaaggc ccatggtaac tcctggtgta accggactga
     1141 gaaacttagg aaatacttgc tatatgaatt ctgttcttca agtgttgagt catttactca
     1201 tttttcgaca atgtttttta aagcttgacc tgaaccagtg gctggctgtg gctgccagcg
     1261 ataaggcccg atcctataag cactcagccg tcacggaggc ggcggcacag cagatgaacg
     1321 aagggcaaga gaaagagaaa ggcttcgtat gctccagaca ttcgggttta tcctcaggcc
     1381 tgagcggagg ggcctcaaaa ggtcggaaca tggagcttat tcagccaagg gagcccagtt
     1441 ccccgtacag ttctctctgc catgaattgc atatcctgtt ccaagtcatg tggtctggag
     1501 agtgggcctt ggtctcaccg tttgccatgc ttcactccgt gtggaggctg atccctgctt
     1561 tccgcggtta cgcccagcag gatgctcagg aatttctttg tgaacttctg gataagatac
     1621 aacgtgaact agagacaacc ggaaccaagt taccagccct catccccact tcccaaagga
     1681 gacttattga gcaagttctg aatgtggtga ataacatttt tcacggacaa tttcttagtc
     1741 aggttacatg tcttgcttgt gacaacaaat cagataccat agaatccttc tgggacttgt
     1801 ccctggagtt tccagagaga taccagtgca gtgggaaaga tgctgcctcc cagccgtgcc
     1861 tggttactga catgttggac aaatttacag aaacagaagc tttagaaggg aaaatctaca
     1921 tgtgtgacca ttgtaactca aagcgtagaa agttttcgtc aaaatcagtt gtattcacag
     1981 aagcccagaa gcagcttatg atatgccatc tacctcaggt tctcagactg cacctcaaac
     2041 ggttcagatg gtcaggacgt aataaccgag agaagattgg tgttcatgtt gtctttgagg
     2101 aaaccttaaa catggagcct tattgctgca gggagaccct gaacgctctc agaccagagt
     2161 gctttctcta taatttatct gctgtcgtaa ttcaccatgg aaaaggattt ggctcaggac
     2221 actacactgc ctactgctac aattccgaag gagggttctg ggtccactgc aacgattcca
     2281 agctgagcat gtgcacgatg gaagaagtac gcaaggccca agcttatatc ttattttata
     2341 ctcagcgagt tactgagaat ggacattcga aactcttgcc tcccgagctc ctgtccaata
     2401 gccagcaccc cagtaaggag actgatgcct cttctaatga agtccttagc tgatccagac
     2461 agtgggctct cgttatctgt atatatcctt tttaaatggg ctgacctacg ctgctgtgct
     2521 tcattgtttt tattctggaa ttatgatcag tgcctgctat gtttagacat tgtgtattta
     2581 actaccaagt ttttcttttc tttttttaca gagacaaact ataaatatat gtatatcaac
     2641 tataggccaa ctaaactttt ttcaaatatt ttgagtttta tacttttagt gtttacctca
     2701 gactgttacc tcttatattc tgatgtctta attgcctcaa atcatgaatt tgtgcaatct
     2761 actaaagaaa ttcaggtggc atcattatat atattattat tatttaactt ctgtagctgt
     2821 tttctataca gattctaact ccacggggaa ggagacgctc gtcacagatt gtcttgctga
     2881 ctccagctct tccccgttgg aggtaaacag attggaagtg agatactgaa gcatcaccta
     2941 gctccagtca ctcctgaggc ttctacaggg ctcggagtag atttaatgca gatactggtc
     3001 tttcactcca aaatttattg cttccataac tgtcctttat tgagcacaaa ttcaaaatga
     3061 aaatagcaga tttacacatg gtatatactt caatgaactt tggaactatg ggcaatgaaa
     3121 aaatagttct aataaggcag tcacaaaatt ttgaatttag caaaccaata tattatgata
     3181 cacaaatgta gtttatcttg agaatgagtt tttacgttta attttagata tcttaagtag
     3241 ttgagattta tttctttatt ttttattttt agttcaaagg agtaagacaa atgcataggg
     3301 gcaaatgcat aggggcagat gtttaaggca gagagaagac agttcgagca tggcacctgg
     3361 gctgttacat ctaagatctt gtttttctcg aagtacccta agcctgactc ttgctaggat
     3421 tatgtgacca ctgggaattt ctcagggccc tggccccttt ttaaaaacac tagaagtggt
     3481 ctaaacttga attaactaaa agcaagagag attcctttcg ctgtgttcta aagaaagctt
     3541 tccaggtctt atggatggag ctctgctgct gccatggcca tggccatggc caccgccacc
     3601 caacctgctc agaaatgggg ctccaccaac ccacagatcc caaggaacct gtgagccact
     3661 gggagaggtt tttttttccc ccttcttcct aaagaaagtg acttaattta cagcttatat
     3721 ctaagccagg aagagttatc tttagcacag acttctgaaa ggagtgtcgc ctggggcagc
     3781 ttattaacaa accgcaacaa aaacacatca accgaagaca gaatcctatg tgccaaaaat
     3841 acagctggag taatatttgg agtgatatta ggtcacttac ccaaagcgta tacaaattgt
     3901 tgcatcagct gttaaatata cctcattaaa gattcatgtg ataaaagtta ccaaatctag
     3961 cctttaattt caagaacctt ttttttttct agaccaacac attgtagcac cttttttttt
     4021 tttactggca tttaaaagaa acaaaacatt aaactagcac acagcagact gttgtacttc
     4081 ccactagatt ttgttgtgaa tctaagatta cactgaaaaa aaaaaaaact aaacaaaacc
     4141 caaatgatgc aaagaaactt cagtttctta ttaaatacct cagatctgca aggtggacac
     4201 ccacgcaaaa aaccaacagt ttaggctgta aaataattta ctaaaggcac tattgttaac
     4261 catcacagga agacacatca ctaaatgtaa caatgacttt aagggctaca taactactaa
     4321 gcaaacaaca agtgttggtt ttggctttgt gttgttttgg ctttccttta taaggccata
     4381 ctccttccgg ccactcagga cacaaggatg tctgctccca acagtagtac tctgagataa
     4441 gtttggacct tacaaagagg gagactgcag gaaaggtctt agaaaaccct aaagtttatt
     4501 taggggtcag ttttcaatat cctgggctta gaggtcaagc tgctcaaaaa ccaagaccat
     4561 gaatgcagaa cccaaggagg cagctggagg gcctgtgagt gtgtgagttc acgtggagcc
     4621 cctcagcacc aggaagacac agctcacaaa gtcaaaagta gccttcccgg aaaacttcaa
     4681 gcagcccgtg gtccagggcc ctaagtctac ctttccttca gagacaatgt caagcaaaat
     4741 aaaaattgat ttagcattcc ggaagcaata cagcattact gtgtcaaggt atacacaaat
     4801 taaggcttta cctgggcaag ggacgaattt ggaactaaga tggaccattt ctagcaaatc
     4861 atacaaagat tttaagcagc taaatgatta ttgggcccag cctaaagtcg aatgtgtctt
     4921 tatgttcaaa ttaacacaca gtttatgaaa ggtctcgaac ctcatctcct tgagtaacct
     4981 gatgctggga tctctaactt actggaggcc gtgatgttca gtgcttggct caggaaggaa
     5041 aaagcccaat cccaagataa ttgttctaat taggacaaga ttgaaacttc ttttgcttgt
     5101 ggctttactg ttgatttggt tttctaatat ggaacacata tcctgtaaat atgaaccctt
     5161 gagggacatt tactacagca aggtttttcc agttggcaca aggtttttcc atgatgctta
     5221 aatcatttta aatatgcttt ta
//
