LOCUS       NM_173754               4462 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ubiquitin specific peptidase 43 (Usp43), transcript
            variant 1, mRNA.
ACCESSION   NM_173754
VERSION     NM_173754.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4462)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK042217.1, AK083271.1 and AL732570.12.
            
            On Jan 19, 2007 this sequence version replaced NM_173754.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK083271.1, SRR7345562.1395609.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-163               AK042217.1         2-164
            164-3795            AK083271.1         2-3633
            3796-4462           AL732570.12        7485-8151           c
FEATURES             Location/Qualifiers
     source          1..4462
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 41.13 cM"
     gene            1..4462
                     /gene="Usp43"
                     /note="ubiquitin specific peptidase 43"
                     /db_xref="GeneID:216835"
                     /db_xref="MGI:MGI:2444541"
     exon            1..609
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            610..741
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            742..845
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            846..938
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1074
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1210
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1346
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1458
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            1459..1562
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            1563..1640
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            1641..1767
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            1768..2116
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            2117..2275
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            2276..2440
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     exon            2441..4462
                     /gene="Usp43"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3972..3977
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Usp43"
                     /note="hexamer: AATAAA"
     polyA_site      3991
                     /gene="Usp43"
                     /note="major polyA site"
     regulatory      4267..4272
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Usp43"
                     /note="hexamer: AATAAA"
     polyA_site      4296
                     /gene="Usp43"
                     /note="major polyA site"
     regulatory      4439..4444
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Usp43"
                     /note="hexamer: ATTAAA"
     polyA_site      4460
                     /gene="Usp43"
ORIGIN      
        1 aggtagccgg cgcccggcgc ctccgggagg cggtgaggac cgggaagctg ccggcccgcc
       61 tggggtctcg ggggctgcgc tcccggacca ccgtgcgtgg ccagcatgga tccgggcgtg
      121 gggaacgcac tgggagaggg gccgcccgcg ccccggcccc gccgccgccg ttcccttcgc
      181 cgcctgctta accgcttcct gctagctctg ggcagccgct cccgctcggg ggactcgccg
      241 ccccggcccc cggcccagcc cagtccctac gatggcgatg gagaaggggg ctttgcctgc
      301 gccccgggcc cggcaccagc ctctgccggg agtccagggc cagatcgtcc tccgggatcc
      361 caaccccaga tatcttcggg tgacggggcg cgtccgcccg gcgctcaggg cttgaagaac
      421 catggcaaca cctgtttcat gaacgcggtg gtgcagtgtc tcagcaacac cgacctgctg
      481 gccgagttcc tagcgctggg gcgctaccgg gcggcgccgg gccgcgccga ggtcaccgag
      541 cagctggcgg cgctggtgcg cgcgctctgg acgcgcgaat acacgcccca actttccgca
      601 gagttcaaga atgctgtttc taagtatggc tcccagttcc aaggcaattc ccagcacgat
      661 gccctggaat tcctgctctg gcttctggat cgtgtccacg aggacttgga aggctcagct
      721 cacgggctgg tatctgagca gctgccccca gaagtgagta agatctcaga ggacctccgg
      781 ccatctgcag ctcctacctc cttagggccc agctttgtgc agagccactt tcaagcacag
      841 tacaggtctt ccttgacttg tccacactgc ctaaaacaaa gcaacacctt cgaccctttc
      901 ctgtgtgtgt cccttcccat ccccttgcgc cagacgagat tcttgagtgt cactttggtg
      961 ttcccctcaa agagccagcg gtttctgcgt gttggcttgg ccgtgccaat cctcagcaca
     1021 gtggcggcct tgaggaagat ggttgcagag gaaggaggtg tccctgcaga ggaggtgatc
     1081 ttggttgaac tgtatcccaa tggattccag cggtcattct ttgatgaaga ggacctgaat
     1141 accattgcag agggtgacaa tgtgtatgct ttccaagtcc ctccttcacc tggtctgggg
     1201 acgctctcag cccatccgtc tggtctgtca gtgtcaccgc gcttgccagt ccgtgacagc
     1261 cagcgattct ctgggcctct ccacagcgag aacagggtgg tctttctctt ctgtaacctg
     1321 gtgggctcag ggcagcaggc gagcaggttt ggaccaccgt tcttgattcg ggaagataga
     1381 acaatctcct gggcccagct tcaacagtgt attctcagca aggttcgatg cctcatgagg
     1441 agtgaggtct ctgcacagga cctggggact ctgttctcca tccgggttgt ggggctctcc
     1501 ttggcctgca gctacttatc tccaaaggac aaccggcccc tttgccactg ggcagttgac
     1561 agggctttgc acctcaggag gccaggaggc cctcctcatg tcaagctggc tgtggaatgg
     1621 gacagctctg tcacagagcg cctgtttggg agcctccagg aggaacgggt ccaggatgca
     1681 gacagtgtgt ggcggcagca gcaggcacac cagcagccca gctgtaccct ggacgaatgt
     1741 tttcagtcct ataccaagga ggaacagctg gcccaggatg atgcatggaa gtgccctcac
     1801 tgccaagtcc tccagcaggg tgtggtcaag ctgagtctgt ggactctgcc cgacatcctg
     1861 atcatccatc tgaaacggtt ctgtcaggtg ggagagagaa ggaacaagct ctccacgctg
     1921 gtgaagttcc cactgtctgg actcaacatg gctccccatg tagcacggag gagcaccaac
     1981 tccaaggcgg ggcccggccc ttggtcctcc tggaagcagc cgatctgcct ccccaccacc
     2041 tacccgctgg acttcctcta cgacttgtat gctgtctgca accaccatgg cagtctgcaa
     2101 ggtgggcatt acacagccta ttgccggaac tccctggacg gccagtggta cagctatgac
     2161 gacagcacag tggaggccct gcgagaggat gaggtcaaca ccaggggggc ttacatccta
     2221 ttctaccaga agcggaacag catccctccc tggtcagcca gcagctccat gagaggttcc
     2281 accagctcct ccttgtctga tcattggctc atgagactcg ggagcctcaa caacagcaca
     2341 aggggaagct tgctgtcctg gagctcggcc ccctgcccct ccatggcccg ggtacccgac
     2401 tctcctgtct tcaccaatgg tgtctgccac caggacaagg gaggagttga gaccagacct
     2461 ttggttcggg gtgttggtgg ccgaagtatc agcatgaagg catctcctgc ttcccgatcc
     2521 aggcatgggc ccttcaagac catgcccctg aggtggtcat ttggacacag ggagaaacgt
     2581 cccggggcat ccgttgaact ggtggaatac ctagagtcca gaagaagacc ccgttctacc
     2641 agccagtcca ttgtgccgct cttgactcgt gctgctggtg gggaagagac ttcagcgtca
     2701 ccgaggtcag atggcaccct tcctgctaaa agtgaagaca gcggtcgagc cattgggcaa
     2761 ggaacaactg gggtgcccct ttcctcatgc cacctcaacc accatccagc cctggggtct
     2821 ttagatgaca gtctgcacac tgccaggaca cgaacgggga atgtaagtca ggatatcagg
     2881 ctcccaaaaa agtttgacct gcccctcact gtgatgccct cagtggggga tgaaaagcca
     2941 gctcgccctg agggccagaa gatgacacct tggaagggaa gtagccaggt gggaagccag
     3001 agtagcccac cttccccctc cactggcttg cttagaaact ttaaggacag tggcccaggt
     3061 accttaccca agatgaagtc taaggctgcc atggaggaaa gggcccctga caaagacagg
     3121 ggacagggga cattcactct tttgaagtct gtgttttgga agaaagaaca caagaggact
     3181 gtcaggactg agagctcacc accagcaccc ccaatctccc tagggagtga ccggctgagc
     3241 cctgctgcca tgaatgagca ggccctcagg attcgagaga gcccagccaa gggcctgggc
     3301 aaccacatgg agagggacat cagatctgcg cccagctctc tccacctccc ccgaaaagcc
     3361 agcaggcccc ctcgagccag tacagctggc acctcacaaa ggaccattcc tggggaacag
     3421 atttcttatg gcaccctgca gagagtgaaa taccacaccc tttccttagg tcgaaagaaa
     3481 tccttacctg agtccagctt ctgatggaaa catttcagtg ttgtgtgaag ccgccatccc
     3541 tggggctgta cactgagaat ctgtaggctc ttgtgtccag agtggatttt ctagaatcca
     3601 gttgacttgt ggcctccccc caccccccca aaaaagaaaa gtttggtctc tgtaactctt
     3661 gtcatattcc aataacctgg tgtcaaagtg gttgggttcc cattgctggg ttttgataca
     3721 gcctggccac tagacggtgc tgctgagccc aaattatcat gacaaggcta aaattagtgt
     3781 ttggtgtatg taagtccagg gcctgccata gtctactaaa aagactctga tgtcacggca
     3841 gatactcact ctcaccagct tgtgtgcccc tagcttacat gccctgcttc ttttcttcta
     3901 ttctcccttc ttcctctccc tcttcccctc cctccctcct ttttcccatt ctttcctttc
     3961 atttttttaa aaataaaggg cttgtaagaa agatcttttc cttttcatgc ttgtcttgga
     4021 taagtgtcaa agatgccaag aaaagaaaag aataagagat agagtgtggc agtggcggtg
     4081 agagatggga gcgtgacagt ggcggcgaga gatgggagag aagagactga tatctcagga
     4141 agattactta atatatagca acaaaattgt attacagctt ttcacggtat tttaaaaaga
     4201 taactatttt gatatcagaa taaagaaggt ttttttaaaa aaaatatgag atctatgcac
     4261 aattttaata aaaattgtgt ttgtgaaact tgcaaatggc ggactgaatt actgaaattt
     4321 gaaaagtgac tcacttcatt cctgttacat tgcatagtca gtcacagctt gttgctatct
     4381 atcagaatgc agttgcctgt gttgtttctg aaacttgaga gggaaaaaaa agctcttaat
     4441 taaaattatt tgtgcctcca tc
//
