LOCUS       NM_029749               5151 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ubiquitin specific peptidase 42 (Usp42), mRNA.
ACCESSION   NM_029749 XM_132483
VERSION     NM_029749.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5151)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5151)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5151)
  AUTHORS   Adissu,H.A., Estabel,J., Sunter,D., Tuck,E., Hooks,Y.,
            Carragher,D.M., Clarke,K., Karp,N.A., Newbigging,S., Jones,N.,
            Morikawa,L., White,J.K. and McKerlie,C.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Histopathology reveals correlative and unique phenotypes in a
            high-throughput mouse phenotyping screen
  JOURNAL   Dis Model Mech 7 (5), 515-524 (2014)
   PUBMED   24652767
REFERENCE   4  (bases 1 to 5151)
  AUTHORS   Pettitt,S.J., Liang,Q., Rairdan,X.Y., Moran,J.L., Prosser,H.M.,
            Beier,D.R., Lloyd,K.C., Bradley,A. and Skarnes,W.C.
  TITLE     Agouti C57BL/6N embryonic stem cells for mouse genetic resources
  JOURNAL   Nat Methods 6 (7), 493-495 (2009)
   PUBMED   19525957
REFERENCE   5  (bases 1 to 5151)
  AUTHORS   Kim,Y.K., Kim,Y.S., Yoo,K.J., Lee,H.J., Lee,D.R., Yeo,C.Y. and
            Baek,K.H.
  TITLE     The expression of Usp42 during embryogenesis and spermatogenesis in
            mouse
  JOURNAL   Gene Expr Patterns 7 (1-2), 143-148 (2007)
   PUBMED   16904385
  REMARK    GeneRIF: Northern blot analysis revealed that Usp42 is expressed
            mainly in brain, lung, thymus and testis, and at E10.5 the most
            during embryonic development.
REFERENCE   6  (bases 1 to 5151)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC136746.15.
            
            On Oct 26, 2006 this sequence version replaced NM_029749.1.
            
            Sequence Note: This RefSeq record was created using sequence from
            the reference genome strain C57BL/6J because transcripts from the
            reference strain were not available for the full length of the
            gene.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC137852.1, SRR9219380.80314.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               AC136746.15        108214-108331       c
            119-365             AC136746.15        103831-104077       c
            366-566             AC136746.15        102540-102740       c
            567-677             AC136746.15        99946-100056        c
            678-780             AC136746.15        99160-99262         c
            781-848             AC136746.15        98338-98405         c
            849-919             AC136746.15        97684-97754         c
            920-1002            AC136746.15        97199-97281         c
            1003-1114           AC136746.15        96328-96439         c
            1115-1255           AC136746.15        95778-95918         c
            1256-1356           AC136746.15        95545-95645         c
            1357-1510           AC136746.15        93975-94128         c
            1511-2218           AC136746.15        92825-93532         c
            2219-2313           AC136746.15        92628-92722         c
            2314-3792           AC136746.15        90653-92131         c
            3793-4094           AC136746.15        89587-89888         c
            4095-4133           AC136746.15        88001-88039         c
            4134-5151           AC136746.15        86376-87393         c
FEATURES             Location/Qualifiers
     source          1..5151
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 82.5 cM"
     gene            1..5151
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /note="ubiquitin specific peptidase 42"
                     /db_xref="GeneID:76800"
                     /db_xref="MGI:MGI:1924050"
     exon            1..118
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            119..365
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            366..566
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            567..677
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            678..780
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            781..848
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            849..919
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1002
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1114
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1255
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1356
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            1357..1510
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            1511..2218
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            2219..2313
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            2314..3792
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            3793..4094
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            4095..4133
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     exon            4134..5151
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5131..5136
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /note="hexamer: TATAAA"
     polyA_site      5151
                     /gene="Usp42"
                     /gene_synonym="2410140K03Rik; 3110031A07Rik;
                     A630018G05Rik; D5Ertd591e"
                     /note="major polyA site"
ORIGIN      
        1 ggcggcggcg gtgcccggat ggaggcacgt cattgtcccc cgccgggcgg ctgggctgtg
       61 tgcggcggcg gcggcggcgg cggccgaggg ggatggagcg agtgccgagc cgggtcaggg
      121 ttgaaaaatg accatagttg acaaaactga accttcagac ccatcaacct gtcagaacca
      181 gcctggcagt tgtgaggcgg tctcacctga agacatggac acaggctctg ccagctgggg
      241 cgctgtgtct tcaataagtg atgtctcaag tcacacactt ccattagggc cagtgcctgg
      301 tgctgtagtt tattctaact cgtctgtacc tgaaaaatca aagccatcac caccaaagga
      361 tcaagtccta ggtgatggca ttgctcctcc tcaaaaggtc ctgtttccat ctgaaaagat
      421 ttgtcttaag tggcaacaaa gtcatcgagt tggcgctggg ctccagaatt tgggcaacac
      481 ctgttttgcc aatgccgcat tgcagtgtct gacttacacg ccacccctcg ccaattacat
      541 gttatcccat gaacactcca agacatgcca cgcagaagga ttttgtatga tgtgcacgat
      601 gcagacacac attacccagg cacttagcaa ccctggggat gttatcaagc cgatgttcgt
      661 catcaatgaa atgcggcgta tagctagaca cttccgtttt ggaaaccaag aagatgccca
      721 tgaatttctt cagtacacgg tcgatgccat gcagaaagca tgtttaaatg gcagcaataa
      781 attagacaga cacacccagg ccaccaccct ggtctgccag atatttggag gctacctaag
      841 atcccgagtt aaatgtttaa attgcaaggg tgtttcagat acctttgatc catatctgga
      901 cataacgttg gagattaagg ctgcacagag tgttaccaag gcgttagagc agtttgtgaa
      961 gccagaacaa ctggatggag aaaactccta caagtgcagc aagtgcaaaa aaatggttcc
     1021 agcttcaaag agattcacaa tccataggtc ctctaatgtt cttaccatct cactgaagcg
     1081 ctttgccaac ttcaccggtg gaaagattgc taaggatgtg aaatatcctg agtaccttga
     1141 tatccggccc tatatgtctc agcccaatgg agagccaatt atttatgttt tgtatgctgt
     1201 gctggtgcac actggtttta attgtcatgc tggccactac ttttgctaca tcaaggctag
     1261 caatggcctc tggtatcaga tgaatgactc catcgtgtcc accagtgata tcagagcagt
     1321 gcttaaccag caagcttacg tgctctttta tatcaggtcc catgatgtga aaaatggagg
     1381 ggagtctgct catcctgccc atagccccgg ccaatcctct ccccgcccag gagtcagtca
     1441 gcgggtagtc aacaacaagc aggtggctcc agggtttatt ggaccccagc tgccttccca
     1501 tgtgatgaag aacacgccac acttgaatgg caccacgcca gtgaaagaca caccaagtag
     1561 ttctgtgtca agccctaacg gaaacaccag cgtcaatagg gccagtcctg ctactgcttc
     1621 gacttctgtg cagaactggt ctgttaccag accctcagtt attccagatc accccaagaa
     1681 acaaaaaatc accatcagta ttcacaacaa gttgcctgct cgccagggtc aggcaccact
     1741 gaataacagc ctccatggcc cttgtctgga ggctcctagt aaggcggcac cctcctccac
     1801 catcactaac ccttctgcaa tacagtctac ctcgaacgta cccacaacgt cgacttcccc
     1861 cagtgaggcc tgtcccaagc ccatggtgaa cggcaaggct aaagtgggcg ccagtgtgct
     1921 tgtcccctat ggggccgagt cctcagaaga gtctgatgag gagtcgaagg gcctggccaa
     1981 ggagaacggt gtggacatga tggccggcac tcactccgat aggccagaag ctgctgcaga
     2041 tgacggtgct gaggcttcct cccatgagct tcaagaaccc gtcctgctaa atggtgctaa
     2101 tagcgcagac agtgactcac aagagaacag cctggcattt gacagtgcca gctgccaggt
     2161 ccagcccgag ctacacacag aaaacctctt ttccaaactt aatggtcttc ctggaaaggt
     2221 gacgcctgct cctttgcagt ctgttcctga agacagaatc cttgagacct tcaagcttac
     2281 caaccaggca aagggtccag cgggtgaaga gagttggact acgacagggg gaagctctcc
     2341 aaaggaccct gtttcacagc tggagcccat cagtgatgag cccagtcccc ttgagatacc
     2401 ggaggctgtc accaatggga gcacacagac cccttccacc acatcacccc tggagcccac
     2461 catcagctgt accaaagaag actcgtccgt tgttgtctca gctgaacctg tggagggttt
     2521 gccttccgtc cctgctcttt gtaacagcac tggtactatc ttgggggata ccccagtgcc
     2581 cgaattgtgt gaccctggag acttgactgc caacccgagc cagccaaccg aagcagtgaa
     2641 aggtgataca gctgagaagg ctcaggactc tgccatggct gaagtggtgg agaggctgag
     2701 ccctgctccc tcagtactca caggtgacgg gtgtgagcag aaactcttac tttacctcag
     2761 cgcagagggg tcagaggaga cagaagactc ttccagaagc tcggcggtct ctgctgacac
     2821 gatgccccct aagcctgaca ggaccaccac cagctcctgt gaaggggctg ccgagcaggc
     2881 tgctggggac agaggcgatg gaggccatgt gggacccaaa gctcaggagc cttccccagc
     2941 caaggaaaag atgagcagcc tccggaaagt ggaccgagga cactatcgga gccggagaga
     3001 gcgctcctcc agtggggagc acgtgaggga cagcaggccc cggccggagg accatcacca
     3061 taagaagcgg cactgctaca gccgagagcg gcccaagcag gaccgacacc ctactaattc
     3121 atactgcaat gggggccagc acttgggcca cggggacaga gccagccctg agcgccgctc
     3181 cctgagcagg tatagtcacc accactcacg gattaggagt ggcctggagc aggactggag
     3241 ccggtaccac catttggaaa atgagcatgc ttgggtcagg gagagattct accaggacaa
     3301 gctgcggtgg gacaagtgca ggtattacca cgacaggtac acgcccctat acacggcccg
     3361 ggacgcccga gaatggcggc ctctgcatgg tcgtgagcat gaccgccttg tccagtctgg
     3421 acggccatac aaggacagct actggggccg caagggctgg gagctgcaat cccgggggaa
     3481 ggaacggccc cacttcaaca gcccccgaga ggcccctagc cttgctgtgc ccctcgagag
     3541 acatctccaa gagaaggctg cgctgagtgt gcaggacagc agccacagtc tccctgagcg
     3601 ctttcatgaa cacaaaagtg tcaagtcgag gaagcggagg tatgagactc tagaaaataa
     3661 tgatggccgt ctagaaaaga aagtccacaa aagcctggag aaggacacgc tagaggagcc
     3721 aagggtgaag aagcacaaaa agtctaaaaa gaaaaagaag tccaaagata aacaccggga
     3781 tcgagaaagc aggcaccagc aggagtctga tttttcagga gcatactctg atgctgacct
     3841 ccatagacac cggaagaaaa agaagaaaaa gaaaaggcat tccaggaagt cggaggactt
     3901 tataaaggat gttgagatgc gtttaccgaa gctctccagc tacgaggccg gcggccattt
     3961 ccggagaaca gagggcagct ttctcctggc tgatggtctg cctgtggaag acagcggccc
     4021 tttccgggag aaaacgaagc atttaaggat ggaaagccgg cctgacagat gccgtctgtc
     4081 ggagtatggc cagggtgact aaacagcctt ggccttacaa caacaaaatt acgattcaac
     4141 attttgaaca gaagccatcc ccaacccagc ttaaattata aacatagaga ataactttgt
     4201 ccgaactgcg tggtgcttct ttagtacata ctgtacagag tttaccatgg acaactgttt
     4261 cttttttctt ttttttcttt tcttttttca gtttttacct tttcttaatt gcccttattc
     4321 caaacggata ctttctacac tgctgaacat tgtaaattac cgtgtacata aaatcacact
     4381 gacaataatg ccctggaata gaccatctca aatgctgctt aaccacagac tcaggttgac
     4441 tacttgtatc tcatgtaatg ttcctccacg ctagacacct ggtgcacggc cagctgggaa
     4501 ccatggactt caaaaggaca agcgacagtg cgtctattta aattaaagac ttatttaaag
     4561 acccaagctc tcagcgagac cttcgagggc ttcctctgca atgtctgata tagaaactaa
     4621 tttgttcaca ttttagttgt attcaagatt tgaagatgta ttttatagac aagttctgtt
     4681 tttgaacttt gtggaactat tccaatcaat ttaccagtta tgatgagtat ttgcattatg
     4741 aatgtataat ccagacatta tttgtaaagc ctacagtatg ttttttttac ctaacacttt
     4801 ttatactgtg tctcgtctcg acaatatgat attgaagtct gagtcgtcag cttgatccct
     4861 tcaagtttct agttacagac aaaaatcata ctgtgatttt atttttaata tggatatgct
     4921 ataaaactgt gacacttata attcactggt cctgcatcag gagacgggag tggggagaag
     4981 actgtattta atacagtgtg tatctgaata ctctgtatgg tttatacagt ttgtgttgtt
     5041 cagagatgtc taaagttgat ctttgttttt ttaagattaa aaaagcactt gccccactgt
     5101 atatatacgg catgtaagat ttatatagta tataaatggc agcaaattaa a
//
