LOCUS       XM_030244324            4465 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ubiquitin specific peptidase 28 (Usp28),
            transcript variant X7, mRNA.
ACCESSION   XM_030244324
VERSION     XM_030244324.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030244324.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4465
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..4465
                     /gene="Usp28"
                     /gene_synonym="9830148O20Rik; mKIAA1515"
                     /note="ubiquitin specific peptidase 28; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 26 ESTs, 550 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:235323"
                     /db_xref="MGI:MGI:2442293"
     CDS             933..3500
                     /gene="Usp28"
                     /gene_synonym="9830148O20Rik; mKIAA1515"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 28 isoform
                     X7"
                     /protein_id="XP_030100184.1"
                     /db_xref="GeneID:235323"
                     /db_xref="MGI:MGI:2442293"
                     /translation="MVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYHNLDECLE
                     GAMVEGDIALLPSDRSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFP
                     QIIYMDRYMYKSKELIRSKRESVRKLKEEIQVLQQKLERYVKYGSGPSRFPLPDMLKY
                     VIEFASTKPASESCLSGSAEHVTLPLPSVHCPISDLTPKESSSPESCSQNAGSTFSSP
                     EDALPSSEGMNGPFTSPHSSLETPAPPAPRTVTDEEMNFVKTCLQRWRSEIEQDIQDL
                     KNCISSSTKAIEQMYCDPLLRQVPYRLHAVLVHEGQASAGHYWAYIYNQPRQTWLKYN
                     DISVTESSWEELERDSYGGLRNVSAYCLMYINDNLPHFSAEASSNESDETAGEVEALS
                     VELRQYIQEDNWRFQQEVEEWEEEQSCKIPQMESSPNSSSQDFSTSQESPAVSSHEVR
                     CLSSEHAVIAKEQTAQAIANTAHAYEKSGVEAALSEHNEAEPKKPQETNLAEQLEQAA
                     EARDTEAAAAPNSEVSEVEIPSVGRILVRSDADGYDEEVMLSPAMQGVILAIAKARQT
                     FDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTL
                     LEQFADRNLSYDERSISIMKVAQAKLMEIGPDDMNMEEYKRWHEDYSLFRKVSVYLLT
                     GLELFQKGKYQEALSYLVYAYQSNAGLLVKGPRRGVKESVIALYRRKCLLELNAKAAS
                     LFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGKDIAE
                     NLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCNRFAAVMESIQGVSTVTVK"
ORIGIN      
        1 catcgcgcgc cgcgggcggg ggcgggacgt gtgggcggtg cctcccggtg ctcccgggct
       61 tcgggggcgg tggtggtggc ggtggcgacc gcggcgaaga cgacaacgag agtggggcta
      121 cacgcggagg gacaccacgg ccatgactgc ggagctgcag caggacgact cggcgggggc
      181 ggcggacggc catggctcga gctgccagat gctgttaaat cagctgcgag aaatcacagg
      241 catccaggat ccttcctttc ttcatgaagc attaaaggcc agtaatggtg acatcaccca
      301 ggctgtcagc cttctcacag accaaagagt taaggagccc agtcacgaca caactgctgc
      361 agaaccatct gaagtagaag agagtgctac cagcaaagat ctcttagcaa aagtgataga
      421 cctcactcac gacaacaaag atgacctgca ggcagccatt gccttgagtc tcctggagtc
      481 tcctaacatt caggctgaca acagagatct taatagagcg catgaggcta actctgcaga
      541 aactaaacgc tcaaagagaa aacgctgtga agtttgggga gaaaaccaca atcccaataa
      601 ctggaggaga gtggatggtt ggccagttgg gctgaaaaat gttggcaaca catgttggtt
      661 cagtgctgtt attcagtctc tctttcagtt gcctgaattt cgaagacttg ttctcagtta
      721 taacctgcca cagaacatcc ttgaaaattg tcgaagtcac actgaaaaga gaaatatcat
      781 gtttatgcaa gagcttcagt atttatttgc tctgttgttg ggatcaaatc gaaaatttgt
      841 agacccttct gcagccctgg atctactgaa gggagccttc cgatcatccg aggagcagca
      901 gcagccatct caggaataaa tctgaaaatc ccatggtgca gctattctac ggtacttttc
      961 tgacagaagg ggtccgagaa ggaaagccct tttgtaacaa tgagaccttc ggccagtatc
     1021 ctcttcaggt aaacggttac cacaacttag acgaatgttt ggaaggggcc atggtggaag
     1081 gtgacatcgc gctgcttcct tcggatcgtt ccgtgaagta tgggcaggag cgttggttta
     1141 caaagctgcc tccagtgttg acctttgaac tctccagatt tgagtttaat cagtctcttg
     1201 ggcagcctga aaaaattcat aataagctgg aatttcctca gattatctat atggataggt
     1261 acatgtataa gagcaaagag cttatccgaa gtaagagaga gagcgttcgg aagttgaagg
     1321 aggaaataca agttctgcag cagaagttag aaaggtatgt gaagtacggc tcgggcccat
     1381 ctcggttccc acttcccgac atgttgaaat acgttattga atttgccagt acaaaacctg
     1441 cctctgaaag ctgtctgtct ggaagtgctg agcatgtgac attaccactt ccctcggtgc
     1501 actgcccgat ttctgacctc acacccaagg aaagttcaag tccagaaagc tgctctcaga
     1561 atgctggaag taccttttcc tctccagaag atgctcttcc cagctctgag gggatgaatg
     1621 ggccatttac ctctcctcac tcgtctctgg aaacgcctgc acccccagct cctcggacag
     1681 tcacagatga agaaatgaac ttcgttaaga cctgtcttca gaggtggcgg agtgaaattg
     1741 aacaggatat acaagaccta aagaactgta tctcgagcag cacgaaggcg attgagcaga
     1801 tgtactgtga ccctcttctt cgtcaggtgc cttatcgctt acatgcagtt cttgttcacg
     1861 aaggacaagc cagtgcagga cactactggg catacatcta caaccagccc cggcagacct
     1921 ggctcaaata caacgacatc tctgttactg agtcttcctg ggaggaactt gaaagagatt
     1981 cttacggggg cctgagaaat gtcagcgcct actgcttgat gtatatcaat gacaacttgc
     2041 cccacttcag tgcagaggca tcttctaatg aatctgatga gactgcagga gaagtggaag
     2101 ccctgtctgt ggaactcagg cagtacattc aggaagataa ctggaggttt cagcaagagg
     2161 tggaggaatg ggaggaagaa cagtcctgta agatcccaca gatggagtcc tccccgaact
     2221 cttcctcaca ggatttctcc acatcacaag agtctccagc agtgtcctct catgaggtcc
     2281 gatgcttgtc ttctgagcat gctgtgattg caaaagaaca gactgcccag gcaattgcca
     2341 acacagctca tgcctacgag aagagtggtg tagaagcagc cttgagtgag cataatgaag
     2401 ctgagcccaa gaagccccag gaaacaaacc ttgcagagca gttagagcag gcggccgagg
     2461 ccagggacac ggaggctgct gccgcaccta actctgaggt ctctgaagtg gagattccca
     2521 gtgtgggaag gattcttgtt aggtctgatg cagatggcta tgatgaggag gtgatgctga
     2581 gccctgccat gcaaggggtc atcctggcca tagctaaagc acgccagacc tttgaccgag
     2641 atgggtctga agcagggctt attaaggcat ttcatgagga gtactccagg ctctatcagc
     2701 ttgccaaaga gacacccacc tctcacagtg accctcgcct tcagcatgtt cttgtctact
     2761 ttttccaaaa tgaagcaccc aagagggtag tagaacggac ccttctggaa cagtttgcgg
     2821 atagaaacct tagctatgat gagagatcta tcagtatcat gaaggtggct caggccaaat
     2881 tgatggaaat tggtccagat gacatgaaca tggaagagta taagaggtgg catgaagatt
     2941 atagtctgtt ccgaaaggtg tctgtgtacc ttctaacggg cctggaactc ttccaaaaag
     3001 gaaagtacca ggaagcattg tcctacctgg tgtacgcata ccagagcaac gctggcctgc
     3061 tggtgaaggg gccccgaagg ggcgtgaagg agtctgtgat tgccttatac cgcagaaaat
     3121 gccttctgga gctgaatgcc aaggctgctt ctctttttga aacaaatgac gaccattctg
     3181 taacagaggg cattaatgta atgaatgagt tgatcattcc ctgcatccac ctgatcatta
     3241 ataacgacat ctccaaggac gacctcgatg ccatcgaggt catgaggaac cactggtgct
     3301 cttacctggg gaaggatatt gcagagaatc tgcagctgtg cttaggagag ttcctaccca
     3361 ggcttctaga tccttctgca gaaatcatcg tcctaaagga gcctccaact attcgaccga
     3421 attctcccta tgatctttgc aaccggtttg cagctgtcat ggagtccatt caaggagttt
     3481 caacagtaac cgtgaaataa gccgctcatg gacagtcaag actcagtctg gtctccggtc
     3541 ccctgcctgt tatgtggcag tctgttgtga cagatttccc tggacagagg gattgggtgt
     3601 ctgagcgaga ttcagaccct cccccctctc gtgatgtgtg tttaagggat taaggataaa
     3661 gttgcacatt ttaggtacag aaccacaaga gctatttcac tgaagaaggc aggagccagt
     3721 gcattaaggt tttgaattat cctagaagac ctgaactgcc tttgtaaatc tcccataaca
     3781 cttgggtttg tctaaacctc gtgccacttt taaattaccc ttcaggcacc agtctttgac
     3841 agcaaaaggg tgactcatca gaactgagcc aggggagcag tttctagtta ttttgtcaag
     3901 ttcaggtgac atttaaaagt cctcagctac cagagattgg tagtaggggt cttgcctggc
     3961 tcttgccagt gatgaaaaga ggtgctggtg agcccttcct tccacataag gctgcgccat
     4021 gaagccgcca agggaaagct gcatccccct ttggtctgtt tatactttag ataaaccaga
     4081 aaacctcaca ttcagtcttg agtgaaagaa aagaaagcat cctgggcttc cagccctgtg
     4141 ctggtgtgac agatgccaca caaggaacac ttaatagtta ataatcatca gaagcaggtg
     4201 tctaaggcta cccggcctaa gagaattttg atcctttctc tccctttttt ttttttaaag
     4261 aaaataaggg atgtgaattt gtataaaaaa taacatctat ctgtgtatat gtagaaagaa
     4321 gctgcttttt aaagaacttc taattggaaa ctcatgtttt aaccaaattt taaggattaa
     4381 tggagcaatc atgggaggga agaacacaat acaactatgc aggttttata aatgtgcaat
     4441 aaaagtattt gttttacctt tggta
//
