LOCUS       XM_036160157            2392 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ubiquitin specific peptidase 16 (Usp16),
            transcript variant X5, mRNA.
ACCESSION   XM_036160157
VERSION     XM_036160157.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..2392
                     /gene="Usp16"
                     /gene_synonym="1200004E02Rik; 2810483I07Rik;
                     6330514E22Rik; UBPM"
                     /note="ubiquitin specific peptidase 16; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 38 ESTs, 717 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 36 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:74112"
                     /db_xref="MGI:MGI:1921362"
     CDS             558..2108
                     /gene="Usp16"
                     /gene_synonym="1200004E02Rik; 2810483I07Rik;
                     6330514E22Rik; UBPM"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 16 isoform
                     X3"
                     /protein_id="XP_036016050.1"
                     /db_xref="GeneID:74112"
                     /db_xref="MGI:MGI:1921362"
                     /translation="MRAEEHQRVSKGILKAFGNSTEKLDEEVKNKVKDYEKKKAIPSF
                     VDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDKNVKMTMEEED
                     KDSEEEKDDSYMKSRSDLPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQERFLHFNELC
                     ATDYTEDNEREADTALAGEVEVDTDSTHGSQEEATQIELSVNQKDLDGQESMIERTPD
                     VQESPEDLGVKSANTESDLGIVTPAPECPRDFNGAFLEERTSGELDIINGLKNLNLNA
                     AVDPDEINIEIPNDSHSAPKVYEVMNEDPETAFCTLANREAFSTDECSIQHCLYQFTR
                     NEKLQDANKLLCEVCSRRQCNGPKANIKGDRRHVYTNAKKQMLVSLAPPVLTLHLKRF
                     QQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGH
                     YTAYAKERTASCHLSNLVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAY
                     LLFYERIL"
ORIGIN      
        1 cgaggaagtc aagtactgta gctcaaaccg attgggccaa gtggttgatt atgttagaaa
       61 acaagctggc gtaagaactt caaaaccaga gaaaaataat ggacacattg agctcgaaaa
      121 taaaaaattg gagaaagaga gtaaaaatga acaagagaga gagaaatcgg aaaacctggc
      181 taaagaaact attcccatgg actctgcttc ccagataact gtgaaaggac tcagtaattt
      241 ggggaatact tgtttcttca atgcagttat gcagaacttg tcacaaacgc cagtgcttag
      301 agaactacta aaagaagtga agatgtctgg aacgattgta aaaatagagc cacctgatct
      361 ggcactaaca gaacctttag aagtaaacct cgagcctcca ggtcctctta ctttagccat
      421 gagccagttt ctcagtgaga tgcaagagaa caaaaagcga gttgtgacac ctaaagagct
      481 cttttctcag agcaacacgt tttaaagggt accagcaaca agacagccag gagctgcttc
      541 gctacctact ggatgggatg agagcggaag aacaccaaag agtgagtaaa ggaattctta
      601 aagcatttgg taattctact gaaaaattgg atgaagaagt aaaaaataaa gttaaagatt
      661 atgaaaagaa aaaggcaatc ccgagttttg tggaccgcat ctttggtggc gagctgacta
      721 gtacgatcat gtgtgatgaa tgcaggactg tctccttagt gcatgaatcg ttccttgatt
      781 tgtctcttcc agttttagat gatcagagtg gtaagaaaag tataaatgat aaaaatgtga
      841 aaatgacaat ggaggaagaa gataaagaca gtgaggaaga gaaagatgac agctacatga
      901 aatcaaggag cgatcttccg tcagggacaa gcaagcacct acagaaaaag gcaaagaagc
      961 aggccaaaaa gcaggccaag aaccaacgaa ggcaacaaaa aattcaagaa agatttcttc
     1021 acttcaatga gctctgcgcc actgactaca cggaagacaa tgaacgtgaa gctgacacag
     1081 cacttgcggg agaagtggaa gtggataccg actccaccca tggttctcaa gaggaggcca
     1141 cacagataga gctgtctgtt aaccagaagg atttggatgg ccaagagagc atgatagaaa
     1201 ggacacctga tgtgcaggaa agcccagagg acctaggagt gaaaagtgct aacaccgaga
     1261 gtgatctggg gattgtgacg cctgctcctg aatgtcctag ggatttcaat ggtgccttcc
     1321 tggaagaaag gaccagtgga gaactagaca ttatcaatgg tttaaaaaac cttaatttga
     1381 atgctgctgt tgatcctgat gaaataaata tagagattcc gaatgacagt cattctgcac
     1441 ccaaggtata tgaggtcatg aacgaggacc cagaaactgc tttctgtacc ctcgcgaacc
     1501 gagaagcgtt tagtactgat gagtgttcca ttcaacattg cttatatcag ttcacccgga
     1561 atgagaaact tcaagatgcc aataaactgc tttgtgaagt gtgttcaaga cggcagtgta
     1621 atggaccaaa ggcaaatata aaaggtgaca ggagacatgt ttacaccaat gccaagaagc
     1681 agatgctggt ctccctcgcg cctcctgtcc tcactctgca tttaaagcga ttccagcagg
     1741 ctggttttaa cctgcgcaaa gttaacaaac acataaagtt tccagaaatc ttagatttgg
     1801 ctcctttttg tacccttaaa tgtaagaatg ttgctgaaga aagtacacga gtgctgtatt
     1861 ccttatatgg agttgttgaa cacagtggta ctatgaggtc agggcattac actgcctatg
     1921 cgaaggagag aactgcaagc tgtcacctct ccaatcttgt tcttcacggt gacattccac
     1981 aagattgtga aatggaatca accaaagggc agtggtttca catcagcgat acacatgtgc
     2041 aagctgtgcc tataactaaa gtactgaact cacaagcgta tctcctattt tatgagagaa
     2101 tactgtgata acaaaaagtg ctttctctgg aaatacacct atggctttta tactggctat
     2161 tataacaata aaaagttaaa ctataaatta tgttcaccta agtaaatgac agaaaaaaaa
     2221 tcatgtttat ttatttaaat acaggcaaaa taatttacag cggttttgta ttagcatact
     2281 ggtttttatt ccttctagtt tcaactttag gaaggatttg aataactaag ttctgtgctt
     2341 actctgactg ggtggtagtg cttgacacat caataaactg atattcccaa aa
//
