LOCUS       XM_006523100            2891 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ubiquitin specific peptidase 16 (Usp16),
            transcript variant X1, mRNA.
ACCESSION   XM_006523100
VERSION     XM_006523100.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006523100.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..2891
                     /gene="Usp16"
                     /gene_synonym="1200004E02Rik; 2810483I07Rik;
                     6330514E22Rik; UBPM"
                     /note="ubiquitin specific peptidase 16; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 53 ESTs, 987 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:74112"
                     /db_xref="MGI:MGI:1921362"
     CDS             130..2607
                     /gene="Usp16"
                     /gene_synonym="1200004E02Rik; 2810483I07Rik;
                     6330514E22Rik; UBPM"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 16 isoform
                     X1"
                     /protein_id="XP_006523163.1"
                     /db_xref="GeneID:74112"
                     /db_xref="MGI:MGI:1921362"
                     /translation="MGKKRTKGRSAPDTVASESAEPVCRHLRKGLEQGNLKKALVNVE
                     WNICQDCKTDNKVKDKPEEEAEDPSVWLCLKCGHQGCGRDSQEQHALKHYTTPRSEPH
                     YLVLSLDNWSVWCYKCDEEVKYCSSNRLGQVVDYVRKQAGVRTSKPAEKNNGHIELEN
                     KKLEKESKNEQEREKSENLAKETIPMDSASQITVKGLSNLGNTCFFNAVMQNLSQTPV
                     LRELLKEVKMSGTIVKIEPPDLALTEPLEVNLEPPGPLTLAMSQFLSEMQENKKRVVT
                     PKELFSQVCKKATRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLD
                     EEVKNKVKDYEKKKAIPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQ
                     SGKKSINDKNVKMTMEEEDKDSEEEKDDSYMKSRSDLPSGTSKHLQKKAKKQAKKQAK
                     NQRRQQKIQERFLHFNELCATDYTEDNEREADTALAGEVEVDTDSTHGSQEEATQIEL
                     SVNQKDLDGQESMIERTPDVQESPEDLGVKSANTESDLGIVTPAPECPRDFNGAFLEE
                     RTSGELDIINGLKNLNLNAAVDPDEINIEIPNDSHSAPKVYEVMNEDPETAFCTLANR
                     EAFSTDECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQCNGPKANIKGDRRHVYTNAK
                     KQMLVSLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTR
                     VLYSLYGVVEHSGTMRSGHYTAYAKERTASCHLSNLVLHGDIPQDCEMESTKGQWFHI
                     SDTHVQAVPITKVLNSQAYLLFYERIL"
ORIGIN      
        1 gccacactcc cgccctgcct cggcctcatc ctcatctact gcgggtgctg tcggctccag
       61 ggccggcccg gtgggcgccg agcagtcgat tgtaactttg tgtcagcgtg cagtccataa
      121 agtgccagca tggggaagaa acggaccaag gggagaagtg ctccagacac ggtggcctca
      181 gagtctgcag aaccagtgtg cagacacctt agaaaagggt tggaacaagg taatttgaaa
      241 aaagctttag taaatgtgga gtggaatatc tgccaagact gtaagactga caataaagtg
      301 aaagataaac ctgaggagga agcagaagac ccttcggttt ggctctgtct taaatgtggc
      361 catcagggct gtggcagaga ttctcaggag cagcatgcct tgaagcacta cacgacaccg
      421 agatccgagc ctcactacct ggtgctcagt ctggacaact ggagcgtctg gtgctacaag
      481 tgtgacgagg aagtcaagta ctgtagctca aaccgattgg gccaagtggt tgattatgtt
      541 agaaaacaag ctggcgtaag aacttcaaaa ccagcagaga aaaataatgg acacattgag
      601 ctcgaaaata aaaaattgga gaaagagagt aaaaatgaac aagagagaga gaaatcggaa
      661 aacctggcta aagaaactat tcccatggac tctgcttccc agataactgt gaaaggactc
      721 agtaatttgg ggaatacttg tttcttcaat gcagttatgc agaacttgtc acaaacgcca
      781 gtgcttagag aactactaaa agaagtgaag atgtctggaa cgattgtaaa aatagagcca
      841 cctgatctgg cactaacaga acctttagaa gtaaacctcg agcctccagg tcctcttact
      901 ttagccatga gccagtttct cagtgagatg caagagaaca aaaagcgagt tgtgacacct
      961 aaagagctct tttctcaggt ctgtaaaaaa gcaacacgtt ttaaagggta ccagcaacaa
     1021 gacagccagg agctgcttcg ctacctactg gatgggatga gagcggaaga acaccaaaga
     1081 gtgagtaaag gaattcttaa agcatttggt aattctactg aaaaattgga tgaagaagta
     1141 aaaaataaag ttaaagatta tgaaaagaaa aaggcaatcc cgagttttgt ggaccgcatc
     1201 tttggtggcg agctgactag tacgatcatg tgtgatgaat gcaggactgt ctccttagtg
     1261 catgaatcgt tccttgattt gtctcttcca gttttagatg atcagagtgg taagaaaagt
     1321 ataaatgata aaaatgtgaa aatgacaatg gaggaagaag ataaagacag tgaggaagag
     1381 aaagatgaca gctacatgaa atcaaggagc gatcttccgt cagggacaag caagcaccta
     1441 cagaaaaagg caaagaagca ggccaaaaag caggccaaga accaacgaag gcaacaaaaa
     1501 attcaagaaa gatttcttca cttcaatgag ctctgcgcca ctgactacac ggaagacaat
     1561 gaacgtgaag ctgacacagc acttgcggga gaagtggaag tggataccga ctccacccat
     1621 ggttctcaag aggaggccac acagatagag ctgtctgtta accagaagga tttggatggc
     1681 caagagagca tgatagaaag gacacctgat gtgcaggaaa gcccagagga cctaggagtg
     1741 aaaagtgcta acaccgagag tgatctgggg attgtgacgc ctgctcctga atgtcctagg
     1801 gatttcaatg gtgccttcct ggaagaaagg accagtggag aactagacat tatcaatggt
     1861 ttaaaaaacc ttaatttgaa tgctgctgtt gatcctgatg aaataaatat agagattccg
     1921 aatgacagtc attctgcacc caaggtatat gaggtcatga acgaggaccc agaaactgct
     1981 ttctgtaccc tcgcgaaccg agaagcgttt agtactgatg agtgttccat tcaacattgc
     2041 ttatatcagt tcacccggaa tgagaaactt caagatgcca ataaactgct ttgtgaagtg
     2101 tgttcaagac ggcagtgtaa tggaccaaag gcaaatataa aaggtgacag gagacatgtt
     2161 tacaccaatg ccaagaagca gatgctggtc tccctcgcgc ctcctgtcct cactctgcat
     2221 ttaaagcgat tccagcaggc tggttttaac ctgcgcaaag ttaacaaaca cataaagttt
     2281 ccagaaatct tagatttggc tcctttttgt acccttaaat gtaagaatgt tgctgaagaa
     2341 agtacacgag tgctgtattc cttatatgga gttgttgaac acagtggtac tatgaggtca
     2401 gggcattaca ctgcctatgc gaaggagaga actgcaagct gtcacctctc caatcttgtt
     2461 cttcacggtg acattccaca agattgtgaa atggaatcaa ccaaagggca gtggtttcac
     2521 atcagcgata cacatgtgca agctgtgcct ataactaaag tactgaactc acaagcgtat
     2581 ctcctatttt atgagagaat actgtgataa caaaaagtgc tttctctgga aatacaccta
     2641 tggcttttat actggctatt ataacaataa aaagttaaac tataaattat gttcacctaa
     2701 gtaaatgaca gaaaaaaaat catgtttatt tatttaaata caggcaaaat aatttacagc
     2761 ggttttgtat tagcatactg gtttttattc cttctagttt caactttagg aaggatttga
     2821 ataactaagt tctgtgctta ctctgactgg gtggtagtgc ttgacacatc aataaactga
     2881 tattcccaaa a
//
