LOCUS       XM_006513227            3218 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ubiquitin specific peptidase 15 (Usp15),
            transcript variant X5, mRNA.
ACCESSION   XM_006513227
VERSION     XM_006513227.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006513227.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..3218
                     /gene="Usp15"
                     /gene_synonym="4921514G19Rik; E430033I05Rik; Gcap18"
                     /note="ubiquitin specific peptidase 15; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 43 ESTs, 317 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:14479"
                     /db_xref="MGI:MGI:101857"
     CDS             379..2427
                     /gene="Usp15"
                     /gene_synonym="4921514G19Rik; E430033I05Rik; Gcap18"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 15 isoform
                     X5"
                     /protein_id="XP_006513290.1"
                     /db_xref="GeneID:14479"
                     /db_xref="MGI:MGI:101857"
                     /translation="MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYA
                     ELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRK
                     KPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFD
                     PFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVPA
                     DKMIVTDIYNHRFHRIFAVDENLSSIMERDDIYVFEININRAEDTEHVVIPVCLREKF
                     RHSSYTHHTGSSLFGQPFLMAIPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGHLRC
                     CEDQNINGNGPNGLHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
                     NGLCTEETCKGQLTGHKKRLFTFQFNNLGNNDINYIKDDTSHIRFDDRQLRLDERSFL
                     ALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPW
                     YCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFL
                     INPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSK
                     AAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDLENENCMHTN
                     "
ORIGIN      
        1 gtccccaggt gcatccaatt tttcaacttt accaaagatc tctccttcat ctctatcaaa
       61 taattataac aacatcaaca acagaaatat cctagtgtac tctagtctca gaacctcgga
      121 aagaagaaac tcctgaggga actggaggac ctgtgacaga ggctacttcc tgagcctctg
      181 gggacctttg tgagctgaaa aggaagtggg gtgcatcatt tacctttctg agtgacaaac
      241 agaatttaga gtgtgaaaaa ctcaaattat tgtctcccgt catatactgc ttataagaac
      301 tatgattatt cagaacctgg aagaaacaat gaacagccag gcctgtgtgg cttaagtaac
      361 ttgggaaata cgtgtttcat gaactcagcc attcagtgtt tgagcaacac acctccactt
      421 actgaatatt tcctcaatga taagtaccaa gaagagctga attttgacaa tcccttagga
      481 atgagaggtg aaatagctaa atcatacgct gaactcatca agcagatgtg gtctggaaag
      541 tttagctacg tcactccaag agcattcaag acacaggtag ggcgcttcgc acctcagttc
      601 tctggatatc aacagcagga ctgccaagaa ctactggctt tcctgttgga tggactgcac
      661 gaggacctga atagaattag gaaaaaaccc tatatccagt taaaagatgc tgatggcagg
      721 ccagacaagg tggttgctga agaagcctgg gagaaccatt taaagcgaaa tgattccatc
      781 atagtagaca tattccatgg ccttttcaag tctacgttag tgtgtcctga gtgtgctaag
      841 atctcggtga cctttgaccc tttctgttac ttgactcttc cattgcctat gaaaaaagaa
      901 cgtagcttgg aagtttattt agttagaatg gatccacttg ctaaacctat gcaatacaaa
      961 gttattgtgc ccaaaattgg aaatatacta gatctttgta cagcgctgtc tgctttgtcg
     1021 ggagtacctg cagataagat gatagtcact gacatataca atcatagatt tcacaggata
     1081 tttgccgtgg atgaaaacct gagtagtatt atggagcggg atgatattta cgtgtttgaa
     1141 attaacatca acagggcaga agacacagag catgtagtta tccctgtctg cctaagagaa
     1201 aaattcagac actcaagtta cactcaccac actggctctt cactgttcgg ccagcctttt
     1261 cttatggcta taccacgaaa caatactgaa gataaactct ataatcttct actcttgaga
     1321 atgtgccggt atgtcaaaat gtctactgaa actgaggaaa cagatggaca cctacgttgc
     1381 tgtgaggacc agaatattaa tgggaatggg ccaaatggcc tacatgaaga gggttcacca
     1441 agtgagatgg aaaccgacga gccagatgac gagtccagcc aggatcaaga gcttccctca
     1501 gagaacgaga acagtcagtc tgaagattca gtcggaggag ataacgattc tgaaaatgga
     1561 ttgtgcactg aagaaacatg caaaggtcaa cttacgggac acaaaaagcg cttgtttaca
     1621 ttccagttca acaacttagg caacaatgac atcaactaca tcaaagacga caccagtcac
     1681 atccgattcg atgacaggca gcttcggctg gacgaaagat cttttctcgc tttggactgg
     1741 gaccctgact tgaagaagag atactttgat gagaatgctg cagaggattt tgaaaaacat
     1801 gaaagtgtgg aatacaaacc tccaaaaagg ccctttgtga agttaaaaga ctgcattgag
     1861 ctcttcacca ccaaggagaa gctgggtgct gaggacccct ggtattgtcc aaattgtaaa
     1921 gagcatcagc aagccacaaa gaaattagat ctgtggtccc tgcctccagt tcttgtggtg
     1981 catctcaaga gattctccta tagtcgctac atgagagaca agctagatac attagtcgat
     2041 tttcccatca gtgacttgga tatgtcagaa ttcctaatta acccaaatgc aggtccttgc
     2101 cgctataatt tgattgctgt ttccaaccac tatggaggga tgggaggagg acattatact
     2161 gcttttgcaa aaaacaaaga tgatgggaag tggtactatt tcgatgacag tagcgtctcc
     2221 actgcatctg aagaccaaat cgtgtccaag gcagcgtacg tgctcttcta ccagagacag
     2281 gacactttca gtgggactgg cttcttccct cttgaccgag aaactaaagg tgcttcagct
     2341 gccacaggta tccccctgga aagtgacgaa gacagcaatg ataatgacaa tgacctagaa
     2401 aatgaaaact gtatgcacac taattaacga aagtgcaaga agccatagga gagactttcc
     2461 tgctggtggt gtctatggag atgaagttat caccacatga aacagaagtc tgagatgagg
     2521 agtttcagat acccgaatgt aaatccttta tcagatttta acttgtgcag tacttgaagt
     2581 gaaacacaat gaaaacttta acagaaattg tctcttaata catttacagt cttgtattta
     2641 caagctaaat atatatagga aatcacaaat aaatcccttt taagtttgct gctgttttga
     2701 tgaattatgt tttctttaat tttttggatg tgacttaatt gatgacaaat gttaaatttg
     2761 tggatgttgg tcattaattt tgctctaata atactgcaag aaaaccatgg ctgaacttag
     2821 ttcttgggta atctagttcc tgcgcgttag gctgcctgtc tgcgccatcc gggtacttag
     2881 ctgctgtgtc ggtgtggctc aaatactgca gtgtccttgg tacaccagat tctctgatct
     2941 gtccctggta atcagtgtgg gtctgttccc accacgtgag gaacagtctt gaggaagttc
     3001 ccttttgttg tctcattaaa gtgcaggcca tgacattgac ttccctcgct gtgggaacga
     3061 acgccttcta gatttcacat gccatcagaa tcattttcag ctacatgtat gtatttttca
     3121 ctgcaattgg aatctattta aatttttcaa ttttgttttg gtttagaatg cttatcttca
     3181 ctccactgtt ggttcaatat taaaggtttt tgctatta
//
