LOCUS       NM_011680               2419 bp    mRNA    linear   ROD 04-MAR-2023
DEFINITION  Mus musculus upstream transcription factor 2 (Usf2), mRNA.
ACCESSION   NM_011680 XM_909912
VERSION     NM_011680.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Liu X, Gao W and Liu W.
  TITLE     Identification of KLF6/PSGs and NPY-Related USF2/CEACAM
            Transcriptional Regulatory Networks via Spinal Cord Bulk and
            Single-Cell RNA-Seq Analysis
  JOURNAL   Dis Markers 2021, 2826609 (2021)
   PUBMED   34880956
  REMARK    GeneRIF: Identification of KLF6/PSGs and NPY-Related USF2/CEACAM
            Transcriptional Regulatory Networks via Spinal Cord Bulk and
            Single-Cell RNA-Seq Analysis.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Fernandez-Perez,A. and Vallejo,M.
  TITLE     Pdx1 and USF transcription factors co-ordinately regulate Alx3 gene
            expression in pancreatic beta-cells
  JOURNAL   Biochem J 463 (2), 287-296 (2014)
   PUBMED   25040025
  REMARK    GeneRIF: Pdx1, USF1 and USF2 co-ordinately regulate Alx3 gene
            expression in pancreatic beta-cells.
REFERENCE   3  (bases 1 to 2419)
  AUTHORS   Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K,
            Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre
            A, Pombero A, Rubenstein JLR, Wakeman WB, Hohmann J, Dee N, Sodt
            AJ, Young R, Smith K, Nguyen TN, Kidney J, Kuan L, Jeromin A,
            Kaykas A, Miller J, Page D, Orta G, Bernard A, Riley Z, Smith S,
            Wohnoutka P, Hawrylycz MJ, Puelles L and Jones AR.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   4  (bases 1 to 2419)
  AUTHORS   Zeng L, Sun Y, Xie L, Wei L, Ren Y, Zhao J, Qin W, Mitchelson K and
            Cheng J.
  TITLE     Construction of a novel oligonucleotide array-based transcription
            factor interaction assay platform and its uses for profiling STAT1
            cofactors in mouse fibroblast cells
  JOURNAL   Proteomics 13 (16), 2377-2385 (2013)
   PUBMED   23749757
REFERENCE   5  (bases 1 to 2419)
  AUTHORS   Matsuda M, Tamura K, Wakui H, Maeda A, Ohsawa M, Kanaoka T,
            Azushima K, Uneda K, Haku S, Tsurumi-Ikeya Y, Toya Y, Maeshima Y,
            Yamashita A and Umemura S.
  TITLE     Upstream stimulatory factors 1 and 2 mediate the transcription of
            angiotensin II binding and inhibitory protein
  JOURNAL   J Biol Chem 288 (26), 19238-19249 (2013)
   PUBMED   23653383
  REMARK    GeneRIF: AGTRAP expression is regulated by USF1 and USF2
REFERENCE   6  (bases 1 to 2419)
  AUTHORS   Vallet VS, Henrion AA, Bucchini D, Casado M, Raymondjean M, Kahn A
            and Vaulont S.
  TITLE     Glucose-dependent liver gene expression in upstream stimulatory
            factor 2 -/- mice
  JOURNAL   J Biol Chem 272 (35), 21944-21949 (1997)
   PUBMED   9268329
REFERENCE   7  (bases 1 to 2419)
  AUTHORS   Steingrimsson E, Sawadogo M, Gilbert DJ, Zervos AS, Brent R, Blanar
            MA, Fisher DE, Copeland NG and Jenkins NA.
  TITLE     Murine chromosomal location of five bHLH-Zip transcription factor
            genes
  JOURNAL   Genomics 28 (2), 179-183 (1995)
   PUBMED   8530024
REFERENCE   8  (bases 1 to 2419)
  AUTHORS   Henrion AA, Martinez A, Mattei MG, Kahn A and Raymondjean M.
  TITLE     Structure, sequence, and chromosomal location of the gene for USF2
            transcription factors in mouse
  JOURNAL   Genomics 25 (1), 36-43 (1995)
   PUBMED   7774954
REFERENCE   9  (bases 1 to 2419)
  AUTHORS   Lin Q, Luo X and Sawadogo M.
  TITLE     Archaic structure of the gene encoding transcription factor USF
  JOURNAL   J Biol Chem 269 (39), 23894-23903 (1994)
   PUBMED   7523363
REFERENCE   10 (bases 1 to 2419)
  AUTHORS   Sirito M, Lin Q, Maity T and Sawadogo M.
  TITLE     Ubiquitous expression of the 43- and 44-kDa forms of transcription
            factor USF in mammalian cells
  JOURNAL   Nucleic Acids Res 22 (3), 427-433 (1994)
   PUBMED   8127680
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC149055.6 and AK146871.1.
            
            [WARNING] On May 25, 2023 this sequence was replaced by
            NM_011680.3.
            
            On Aug 12, 2009 this sequence version replaced NM_011680.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082995.1, U01662.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                AC149055.6         111154-111207
            55-1664             AK146871.1         2-1611
            1665-2419           AC149055.6         121955-122709
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 19.27 cM"
     gene            1..2419
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /note="upstream transcription factor 2"
                     /db_xref="GeneID:22282"
                     /db_xref="MGI:MGI:99961"
     exon            1..108
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..1087
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /note="major late transcription factor 2"
                     /codon_start=1
                     /product="upstream stimulatory factor 2"
                     /protein_id="NP_035810.1"
                     /db_xref="CCDS:CCDS21118.1"
                     /db_xref="GeneID:22282"
                     /db_xref="MGI:MGI:99961"
                     /translation="MDMLDPGLDPASSATAAAAASHDKGPEAEEGVELQEGGDGPGAE
                     EQTAVAIASVQQAAFGDHNIQYQFRTESNGGQVTYRVVQVTDGQLDGQGDAAGAVSVV
                     STAAFAGGQQAVTQVGVDGAAQRPGPAAASVPTGPAAPFPLAVIQNPFSNGGSPAAEA
                     VSGEARFAYFPASSVGDTTAVSVQTTDQSLQAGGQFYVMMTPQDVLQTGTQRTIAPRT
                     HPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASK
                     GGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQ
                     HNLEMVGESTRQ"
     exon            109..155
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            156..274
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            275..475
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            476..626
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            627..714
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            715..773
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            774..868
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            869..997
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
     exon            998..2419
                     /gene="Usf2"
                     /gene_synonym="bHLHb12; Usf-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcccgccccc tcccctccct cccctcccct cccccccgcc ccccccatgg acatgctgga
       61 cccgggtctg gatcccgctt cctcggccac cgctgctgcc gccgccagcc acgacaaggg
      121 acccgaggcc gaggagggcg ttgagctgca ggaaggcggg gacggcccgg gggctgagga
      181 gcagacggcg gtggccatcg ccagtgtcca gcaggcggcg ttcggcgacc acaatatcca
      241 gtaccagttc cgtacagaga gtaatggagg ccaggtgaca taccgcgtag tccaggtgac
      301 tgatggtcag ctggacggcc agggcgacgc ggccggcgcc gtcagcgtcg tgtccaccgc
      361 tgccttcgcg ggggggcagc aggctgtgac ccaggtgggt gtggacgggg cagcccagcg
      421 ccccggccct gccgctgcct ctgtacccac aggtcccgca gcacccttcc cgctggctgt
      481 aattcaaaat ccattcagca atggtggcag cccggcggcc gaagctgtca gcggggaggc
      541 acgatttgct tattttccag catccagtgt gggcgatacc acagctgtgt ctgttcaaac
      601 tacagaccag agcctacagg ccggaggcca gttctatgtc atgatgacac cccaggatgt
      661 gcttcagaca ggcacacaga ggacaattgc accccggaca cacccctatt ctccgaaaat
      721 tgatggaacc agaactcctc gagatgagag aagaagagct cagcacaatg aagtggaacg
      781 gagaaggagg gacaagatca acaactggat cgtccagctt tccaaaatca ttccagattg
      841 tcatgcagac aacagcaaga caggagcaag taaagggggc atcctgtcca aggcttgcga
      901 ttacatccgg gagctacgcc agaccaacca gcgcatgcag gagaccttca aggaggcaga
      961 gcggctgcag atggacaatg agctcctcag gcagcagatc gaggagctga agaatgagaa
     1021 tgccctgctt cgagcccagc tacagcagca caacctggaa atggtgggcg agagtacccg
     1081 gcagtgatgc ccgccggctc acccttcagc tgctgtcggc ctctgctgcc cctcccccag
     1141 cccttagcac agagagggag atgcccctcc ccaagctgcg tttttttata gtagattttt
     1201 aacaaaaaca aggagacata atgcatttct gttgatacgt tgcccactac cctcctccat
     1261 gcgaaaacga tgcccacctg cccatctgtc catcagcctc ccttctcggt cctcaccagc
     1321 ccatcactta tagtgggctc atcaggagga gcaggggagg aggacagagg ccccgctgcc
     1381 cgctgcctcc ttggtctcta gaggtattga gacagggtgc tcatgggaag gagggagctt
     1441 tggggatgcg ggccttccct ggggcttgga cctttgcagg gaggccatgc ccgccacccc
     1501 tcttgttctg gatccctgct cccctctggg tgtgtgggtg tgtgtgtacg tttgggtgtg
     1561 tgtgtatgcg cgtgtgtgcg tgtgtgtgtt ttaattttct ttatggaaaa tggacaaaaa
     1621 atagagagag aggtatttaa ctgcaataaa ctggccagtg tggccccgcc ttgtctgtct
     1681 gtgtgtccat gttgggcatg gggttgggta gggttcctag ggtctccctg atatctaagc
     1741 tacagttata ctgtagctgt gtgacaatgg ctgggggcat taactgaggc cctggggtgc
     1801 tgattagggg tgtgggagct gaggtcaagg acatacccct gctgttagag gggaggctgg
     1861 agtatccctg ggctctgggg ctgaagccct ccctctgtac cagccaatga tgagggctgg
     1921 ccttgagccc cccaccccca agagagggca gatggccaga aagccaggct tggcccggca
     1981 gtctgtcgcc tcaaattgta gctctggcgc ctgtgctgtg acccttgtgg cccttggctg
     2041 atgatgaaac ctgtcctgag aagccacagt gatggttggc ggggtcgggg aataccatca
     2101 tgtccccaag agattggctc accattccca ggatggaggc ctgcgcgtca ggttcccttt
     2161 gctacacttt gtaccttgcc tcaatctaag tactcctgtt ggcccctggt gtcttgagaa
     2221 ccctgtctcg agctggagag atggctcatc agttaagagc acctgctgct cttccatagg
     2281 tcctgagttc aattcccagc aaccacatga tggctcacaa acctctgtaa tgggatccga
     2341 tgccctcttt agtgtgtctg aagacatcga ccgtgtactc atataaatta agtaaataaa
     2401 acttaaaaaa aaaaatgaa
//
