LOCUS       NM_133954               1764 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus U6 snRNA biogenesis 1 (Usb1), mRNA.
ACCESSION   NM_133954
VERSION     NM_133954.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165414.9, AK135527.1 and BB805954.1.
            
            [WARNING] On Dec 19, 2023 this sequence was replaced by
            NM_133954.3.
            
            On Aug 8, 2009 this sequence version replaced NM_133954.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK135527.1, AK160901.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 AC165414.9         26818-26825
            9-1758              AK135527.1         2-1751
            1759-1764           BB805954.1         387-392
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 47.12 cM"
     gene            1..1764
                     /gene="Usb1"
                     /note="U6 snRNA biogenesis 1"
                     /db_xref="GeneID:101985"
                     /db_xref="MGI:MGI:2142454"
     exon            1..182
                     /gene="Usb1"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..882
                     /gene="Usb1"
                     /note="UPF0406 protein C16orf57 homolog; putative U6 snRNA
                     phosphodiesterase; 3'-5' RNA exonuclease USB1"
                     /codon_start=1
                     /product="U6 snRNA phosphodiesterase 1"
                     /protein_id="NP_598715.2"
                     /db_xref="CCDS:CCDS22560.1"
                     /db_xref="GeneID:101985"
                     /db_xref="MGI:MGI:2142454"
                     /translation="MSSAPLVGYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEK
                     LPVPDSVLSMFPSTEEGPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLD
                     ALLPRAQMFVPRLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRV
                     KIYTNQEKTRTFIGLEVSSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHVSLAWCVG
                     DASLQLEGQCLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSMPLK"
     exon            183..349
                     /gene="Usb1"
                     /inference="alignment:Splign:2.1.0"
     exon            350..533
                     /gene="Usb1"
                     /inference="alignment:Splign:2.1.0"
     exon            534..587
                     /gene="Usb1"
                     /inference="alignment:Splign:2.1.0"
     exon            588..693
                     /gene="Usb1"
                     /inference="alignment:Splign:2.1.0"
     exon            694..777
                     /gene="Usb1"
                     /inference="alignment:Splign:2.1.0"
     exon            778..1764
                     /gene="Usb1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacagagcac ttccggctca gaggaactcc gggcgtcgga tcaggttgtc ggtggacacg
       61 gcttgtggtc gaggccccat gagctcggcg cccctggtgg gctacagcag cagcggttca
      121 gaggatgaag cggaggctgt cgccgcgggg cggagcaaac cgggtactgg cttccaccgt
      181 tgtggccaga accccgttcc cagtgagaag cttccagtgc ctgacagtgt gctaagtatg
      241 ttccccagca cagaggaagg gcctgaggac gacagtgcaa agcatggcgg tcgaatccga
      301 acctttcccc atgagcgggg caactgggcc acccacatct acataccgta tgaggcgaag
      361 gaggacttcc gggatctgct tgacgcgttg ctgccccgag ctcagatgtt tgtaccgaga
      421 ctggtactga tggaggagtt ccacgtcagc ctgtcccaga gcgtggttct ccgtcaccac
      481 tggatcctcc cctttgtgca ggtgctcaag gaccgcatgg cctctttcca aaggttcttc
      541 tttactgcca acagggtaaa gatttacacc aatcaagaga aaaccaggac cttcatcggg
      601 ctggaggtca gttcagggca tgcccagttc ctggacctgg tttcagaggt ggacagagcc
      661 atgaaggaat ttgaccttac tactttctac caggacccct catttcatgt cagcctggcc
      721 tggtgtgtag gtgatgctag tctccagctg gagggacagt gcctgcagga actacaggaa
      781 atcgtggatg agtttgaaga ctctgagatg ctgttacgtg tgctggccaa ccaggtccgc
      841 tgcaagtccg ggaacaaatt cttctccatg cctttgaagt gagccttgtc ccgtgcctct
      901 ccacaagccg actgagatgg aggaacttgc tgccatctgt gggatgcccc agccaggagt
      961 cctaatccca cacttagtac tgatctagtg ggctgctcac tctctcctgg tccttaggtt
     1021 ggtaggctgc tactgtaatg tgctcatttc cagaaatcac cagtagaggg cagcccggac
     1081 ctctaattct tcctccactt tcttaggaaa gtcaaatgag cctggctggg gagcccaccc
     1141 acgctcagtc cccaccgagg tctctccact gcagtaatct atattgatgc ccttggccgt
     1201 caaccacttt tttagatccc tgtgttctga cccacctgtg tcagactggg gcttccgttg
     1261 tctgtcagcc tctctttaat ctcctttatt tatcacctcg tcccttcatc ccgtcctgtg
     1321 ccaggagagg tcatttcagg gccagggcac agggtgctaa tttgtggtca gcagcagttt
     1381 tcttcattcc ttcctcccac ttacccagcc aggtgcctgg ggagagccca gcagatgctt
     1441 cattttggct tggctatggc tgctggccag gcctccaaca cccatgaccc ctactttccc
     1501 catcagcttt cccagagatg caaagaggca tcttccctcc agccagagca cccctgcccc
     1561 tgttgctgag catttttcaa agtgggggtg ggaagtgggg agagggccag ggaggcattg
     1621 gagaatttat tttccatcaa gctcctacca gggcaaagag ccaaaccttt ctagttgtca
     1681 tggggatttc tagtgatgga tgaagaaata tttttttaca gttttaaatt atgttcaaca
     1741 aataaaatct gcctttttaa tgtg
//
