LOCUS       NM_001359361            1040 bp    mRNA    linear   ROD 31-JUL-2024
DEFINITION  Mus musculus uroplakin 3B-like (Upk3bl), transcript variant 2,
            mRNA.
ACCESSION   NM_001359361 XM_006504494
VERSION     NM_001359361.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1040)
  AUTHORS   McMahon,A.P., Aronow,B.J., Davidson,D.R., Davies,J.A., Gaido,K.W.,
            Grimmond,S., Lessard,J.L., Little,M.H., Potter,S.S., Wilder,E.L.
            and Zhang,P.
  CONSRTM   GUDMAP project
  TITLE     GUDMAP: the genitourinary developmental molecular anatomy project
  JOURNAL   J Am Soc Nephrol 19 (4), 667-671 (2008)
   PUBMED   18287559
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC115564.1 and AC087420.4.
            
            On Jan 3, 2018 this sequence version replaced XM_006504494.3.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice junction in the 3' end compared to variant 1. The resulting
            isoform (2) has the same N- and C-termini but is 1 aa shorter
            compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC115564.1, AK009780.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1027              BC115564.1         1-1027
            1028-1040           AC087420.4         110490-110502
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 75.72 cM"
     gene            1..1040
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /note="uroplakin 3B-like"
                     /db_xref="GeneID:69665"
                     /db_xref="MGI:MGI:1916915"
     exon            1..219
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /inference="alignment:Splign:2.1.0"
     exon            220..372
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /inference="alignment:Splign:2.1.0"
     exon            373..592
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /inference="alignment:Splign:2.1.0"
     exon            593..669
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /inference="alignment:Splign:2.1.0"
     exon            670..790
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /inference="alignment:Splign:2.1.0"
     exon            791..1040
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1002..1007
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /note="hexamer: AATAAA"
     polyA_site      1036
                     /gene="Upk3bl"
                     /gene_synonym="2310043J07Rik; Upk3bl1"
                     /note="major polyA site"
ORIGIN      
        1 taggggagga gggaggaccc caaagtagca gcctccggga gcagcctcag gcagcccagc
       61 ccaggcggac agagcagctg gggctgcaca gtagaggacc tggaaggaag gacagcagct
      121 ggaaactcag cccagccatg gggccccacg ggaaacagtc cgtgctgcga atgcccctgt
      181 tgttgctgct gacttgtgtc cagtctggga cgggtctgga gagcattaac tatgcccccc
      241 agctcctcgg ggccaccctg gaggggagac tcacacaatc taccttcacg ctggagcaac
      301 ccctgggcca attcaagaac gtcaacctct ctgacccaga tcccatctgg ctggtggtgg
      361 ctcacagtaa cgccgcccag aactttaccg ccccacggaa ggtagaagac aggcatgccc
      421 ctgccaactt tgaccgcaat ggctactatc tcacgctgag ggccaaccgg gtacactaca
      481 agggtggcca gcctgacagc cagctccgag tcctccgtgt tgggaatgac aacaactgtt
      541 ccctggagtc ccagggctgt aactcgcctt tgccaggggc cggcccctat agagtgaaat
      601 tcctggcgat gagtgccgag ggacccgtgg ctgagacact gtggtccgag gagatctacc
      661 tgcagcaagc ccagacattc cgagaagctc cagggtccca gggcaagggc actgtggtca
      721 tcattgcctt cttgtcaatc ctactggcca tcctgcttgt ggtcttcctc gtactggtca
      781 tatccgcttg cttgagtact tccgggtcca gcccagagga gcaagtgcgc atgcggcact
      841 atcacacgca ccacatgggc agcctccgag ctgagcgcag ctcctgagag tttcccaggg
      901 ctttcatctg ggatcaagtt gctgagcctg agctgggacc tacctggaac cctagggaaa
      961 tatcttcagt tcaaagcttg gactaggcaa tctttatcag aaataaatgc cccgaatacc
     1021 tttgtgcttc atcttacata
//
