LOCUS       XM_006509051            9208 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus unc-5 netrin receptor D (Unc5d), transcript
            variant X3, mRNA.
ACCESSION   XM_006509051
VERSION     XM_006509051.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006509051.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9208
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..9208
                     /gene="Unc5d"
                     /gene_synonym="D930029E11Rik; mKIAA1777; Unc5h4"
                     /note="unc-5 netrin receptor D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 15 ESTs, 713 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:210801"
                     /db_xref="MGI:MGI:2389364"
     CDS             330..3161
                     /gene="Unc5d"
                     /gene_synonym="D930029E11Rik; mKIAA1777; Unc5h4"
                     /codon_start=1
                     /product="netrin receptor UNC5D isoform X3"
                     /protein_id="XP_006509114.1"
                     /db_xref="GeneID:210801"
                     /db_xref="MGI:MGI:2389364"
                     /translation="MGTGAADGSRGARRWLPWLGLFFWAAGAAAARGADGSEILPDSI
                     PSAPGTLPHFIEEPEDAYIIKSNPIALRCKARPAMQIFFKCNGEWVHQNEHVSEESLD
                     ESSGLKVREVFINVTRQQVEDFHGPEDYWCQCVAWSHLGTSKSRKASVRIAYLRKNFE
                     QDPQGREVPIEGMIVLHCRPPEGVPAAEVEWLKNEEPIDSEQDENIDTRADHNLIIRQ
                     ARLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRT
                     CTNPAPLNGGAFCEGMSVQKITCTALCPVDGSWEVWSEWSVCSPECEHLRIRECTAPP
                     PRNGGKFCEGLSQESENCTDGLCILDKKPLHEIKPQRWSRRGIENASDIALYSGLGAA
                     VVAVAVLVIGVTLYRRSHSDYGVDVIDSSALTGNSLLLNPAMQPDLTVSRTYSGPICL
                     QDPLDKELMTESSLFNPLSDIKVKVQSSFMVSLGVSERAEYHGKNHSGTFPHGNNRGF
                     STIHPRNKTPYIQNLSSLPTRTELRTTGVFGHLGGRLVMPNTGVSLLIPHGAIPEENS
                     WEIYMSINQGEPSLQSDGSEVLLSPEVTCGPPDMLVTTPFALTIPHCADVSSEHWNIH
                     LKKRTQQGKWEEVMSVEDESTSCYCLLDPFACHVLLDSFGTYALTGEPITDCAVKQLK
                     VAVFGCMSCNSLDYNLRVYCVDNTPCAFQEVISDERHQGGQLLEEPKLLHFKGNTFSL
                     QVSVLDIPPFLWRIKPFTACQEVPFSRVWSSNRQPLHCAFSLERYTPTTTQLSCKICI
                     RQLKGHEQILQVQTSILESERETITFFAQEDSTFPAQTGPKAFKIPYSIRQRICATFD
                     TPNAKGKDWQMLAQKNSINRNLSYFATQSSPSAVILNLWEARHQQDGDLDSLACALEE
                     IGRTHTKLSNITEPQIDDADFNYSRQNGL"
ORIGIN      
        1 gaggggtgga gcagaggcgg ccccggggct cattagcgat gcggtctcca ggctcggttt
       61 ggtagtcccg gacccggagc ggagctgggg ctgcgggccg cttagcgggg acggcgggcg
      121 gcgccgcagg aggcgatggg ggcgcgcgct gcgtcccgct gcccatctga tatccctgtt
      181 ccgctgctgt agggagcggc ggtggggaaa aagagactcg ccacagacca ccacctccgg
      241 ggaaacctac tggcgttggc tccctgccgt cgttcctcgc ggacttccag ggcgtggaag
      301 aggagcgaat cctgagagga gctcggagca tggggacagg ggctgcagac ggcagccgcg
      361 gggcgcgccg gtggctccca tggctaggac tctttttctg ggcggcgggg gctgcggctg
      421 cccgaggagc cgatggcagt gaaattcttc ccgactctat cccatctgcc cctggaacgc
      481 tgcctcattt catcgaggag cccgaagatg catacatcat caagagcaac ccgattgcac
      541 tcaggtgcaa agcaaggcca gccatgcaga tcttcttcaa atgcaatggg gagtgggtcc
      601 atcagaatga acatgtgtcc gaggagagcc tggatgagag ctcaggcttg aaggtccggg
      661 aagtgtttat caatgtcacc aggcagcaag tggaggactt ccatgggcca gaggactact
      721 ggtgccagtg tgtagcgtgg agccacctgg gaacgtccaa gagtaggaag gcatctgtgc
      781 gcatagccta tttacggaaa aactttgaac aagatccaca aggcagggag gttcctattg
      841 aaggcatgat cgtgctgcat tgtcgcccgc cagagggagt tccagcagca gaggtggaat
      901 ggctgaaaaa tgaggagccc atcgactccg aacaggatga gaacattgac accagggctg
      961 accataactt gatcatcaga caggcccggc tgtcagactc agggaattac acctgtatgg
     1021 cagccaacat cgtggccaag aggaggagcc tctcagcaac tgtggtggtc tacgtgaatg
     1081 gaggctggtc ttcctggaca gagtggtcag cctgcaatgt tcgctgtggt agaggatggc
     1141 agaaacgttc ccggacctgc accaaccccg ctcctctcaa tggtggggcc ttttgtgagg
     1201 gaatgtcagt gcagaaaata acctgcactg ctctttgtcc tgtggatggc agctgggaag
     1261 tgtggagtga atggtcagtc tgcagcccag agtgtgaaca tcttcgtatc cgtgagtgca
     1321 cagctccacc cccaagaaat gggggcaagt tctgtgaagg tctcagccag gaatctgaaa
     1381 actgcacaga tggtctctgc attctagata aaaaacctct tcatgaaata aaaccccaaa
     1441 gatggagtag gagaggcatt gagaatgcca gcgacattgc tttgtactcc ggcttgggtg
     1501 cagccgtggt agctgttgcg gtcctggtca ttggtgtcac cctctacaga cggagccaca
     1561 gtgactacgg agtggatgtc attgactctt ctgcattgac aggaaattct ctactactga
     1621 atcctgccat gcagccagat ctgactgtga gccggacata cagcgggccc atctgtctgc
     1681 aggatccgct cgacaaggag ctcatgacag agtcctcact cttcaatcct ttatctgaca
     1741 tcaaagtcaa agtccagagc tcatttatgg tttccctggg agtgtctgag agagcggagt
     1801 accatggcaa gaatcactcg gggactttcc cccatggaaa caaccgcgga ttcagtacaa
     1861 tacatcccag aaacaaaacg ccgtacatcc aaaatctgtc atcactgccg acaaggacag
     1921 agctgaggac aactggtgtc tttggccatt tagggggacg cttagtaatg ccaaatacag
     1981 gggtgagtct actcatacca catggtgcca tcccagagga gaattcttgg gagatttata
     2041 tgtcaatcaa ccaaggtgaa ccgagcctgc agtcagatgg atctgaggtt ctcctgagtc
     2101 ctgaagtcac ctgtgggcct ccagatatgc ttgtcacaac tccctttgcg ctgaccatcc
     2161 ctcactgtgc agacgtcagt tcagagcact ggaacattca cctgaagaag aggacccagc
     2221 aggggaagtg ggaggaagtg atgtcagtgg aggatgagtc cacatcctgt tactgcctct
     2281 tggatccctt tgcctgtcac gtgctgcttg atagctttgg aacgtatgcc ctcacaggag
     2341 agccaatcac agactgtgcc gtaaagcagc tcaaggtggc tgtgtttggc tgcatgtcct
     2401 gtaactcctt ggattacaac ctgagagttt actgtgtgga caatactcct tgtgcatttc
     2461 aggaagtgat ttctgacgaa cggcaccaag gcggccagct cctggaagaa ccaaagctgc
     2521 tgcatttcaa agggaataca ttcagtctcc aggtctctgt ccttgacatc cctcccttcc
     2581 tctggaggat caaaccgttc actgcatgcc aggaagtccc cttctcccga gtgtggagca
     2641 gcaaccggca gcccctgcac tgtgccttct ccctggagcg ctacacgccc accaccaccc
     2701 agctgtcctg caaaatctgc attcggcagc tcaaaggcca tgaacagatc ctccaagtgc
     2761 agacatccat cctagagagt gaacgagaaa ccatcacttt cttcgcacaa gaggacagta
     2821 cctttcctgc acagactggc ccaaaagcct tcaaaattcc ctattccatc agacagagga
     2881 tctgcgccac gtttgatacc ccaaatgcca aaggcaagga ctggcagatg ttagcacaga
     2941 agaacagcat caataggaat ttatcatatt tcgctaccca aagcagccct tccgctgtca
     3001 ttttgaacct ctgggaagct cgtcatcagc aggatgggga cctcgactcg ctcgcctgtg
     3061 cccttgagga gattgggagg acacacacga aactatccaa catcacagag ccacagattg
     3121 atgatgctga cttcaactac agcaggcaaa atggactcta gtctgtttct tctccggagg
     3181 cagcactagt gatggcctgc ttcagagcag tggcttcaag tggggaagac agggcagatt
     3241 tctgccccgg ggcatttggg ggggaactca gcctttattg agagtcagtg agaaaccctg
     3301 gatgaagaaa aggagtttga tataggtaaa aacatgttaa cggtggggga aaaagagaac
     3361 cccgctatac cctctgaatc cacacatggg tagacattgg atatgctcct caaattcaga
     3421 ctgccgagga ttaaaaagtg aaggtatctg tagatacaag tagttttgaa aaccagatac
     3481 acaacaataa agccgggaag gcagagattt aagtgcatgc ttggaaacag gtttttaatg
     3541 acttgcccca cgggccagat gatcctgaga ccagattttc agattccaac cgactggcat
     3601 cccagaggtt ggaaatcata ataagactag ctttcagaag tgaaagcaga ttgccaactt
     3661 attagtaaga tgtcatcaat gtcagggagg gcatttagaa tttagaatct gagtacatga
     3721 caccagcact tattatatga gtcacttaac agagacaaga tcaagaaggg agatagacct
     3781 caaactagtt cttggtacct caccttcatc ccccacccac ccactcccga gacaaaactc
     3841 atttctctcc tatcctaaaa gattgcagta tggagacagt aaagaacata gttattcatt
     3901 tcaatatgga aacatacttc ctttaactca acagagcagg acaaacaatc tctgttccca
     3961 gccaagccac tctaatgtca gagtgctgtt ataatatgac ttattctatg gagtgttgat
     4021 aagagaggct atacaaggtc caggaaaata tatagactac agatgtccca ggctttgagt
     4081 aagcgctgat tttaggagat gggtaattaa cccaagttct ccaacatttt tcacataaga
     4141 aatgtgtttt gctgtgtttt ttgatccaga ttctggaaat cttctaaact tttgtactat
     4201 gctgtcatag tatgtttcaa tagggcttta ggacctcctg ccatcgtctc tcggaaactt
     4261 acctgatagc ctttctgagt aacacctgag tgagtgagtg agtgagtgag tgagtgagtg
     4321 agtgagtgag tgaataaatg tctccaagga agagaaccct accacacttt cctaggaacc
     4381 atacgcatca ttcagagaga cttctgtgct ctgactgcct agccacacca tgtgtacttt
     4441 ctccttaaca gtattaactc atagctttca ttttaagtta catacacaca cacacacaca
     4501 cacacacaca cacacacaca cacaccaata gtattttaga gaattgaaat ctgtagatta
     4561 ttcacaagct tcatcttata ttttacgaca cttttatatt tgaatacatc attttgacca
     4621 atattctgag agactgaaga tgaacagata tactcttctt ctggaggaag ttttcagtaa
     4681 ctgcccacaa ggaggacaac ccaagccaac cacctacatt aacttccagg cagctactta
     4741 gctttttttt tttttgagga tgattacgtt tgaaaaagca tgatcagaaa taggacaaaa
     4801 aagaatcctt gggaatgagg acatgacatg ctattgtttt tataggtcct ttgtgtgaaa
     4861 acaaatgctc gcaacctctt cccaagtgga aatacctaaa ttcaggttga cgttataacc
     4921 ccttggaaca gacattgaag aattcttgaa tgtgttagct atttttatct aacgagcatg
     4981 tgatatatca ggtcctccat atcacataaa aggctttgcc gtgtgcaaat caaaagaacc
     5041 cgggttgctt tgctcaggaa tgaaaggctt actctattga acaaatgaat catcttcgaa
     5101 ctgacagact tagtcagaat gccatatctg gatcaggaga acaccatttt cccttagact
     5161 caagttattt attcatcctt gtgaagaaga aagagaaaag gcatatagaa cttcttggca
     5221 tcactgatag agtttctggg agaagagatg taaatggttg atgagctaca aaccagatga
     5281 cgatgaacag tagggtcggg tgcgggcaga atcggcatca cttgttaggt aacaaactat
     5341 ttgcaacaca ctctagagag atcctatatt aacatctatg tggaagattt ttgttttaca
     5401 tttcctaccc tatccacttc tcttctttcc cttccaattg gccttataat tgtttatatg
     5461 ttttgtgaac ctacacacgt tctttgtaga tttttaacag cttttttata atattataaa
     5521 cagataaaaa attgtaactg tcctggcatc tgtgtaggtt attttaaggt gaggtagcag
     5581 gaacagcatg aaggttggtc ccatgtgtct gcagttgccc ccattagatt caggttttgt
     5641 gttctgtttg tttgattttt ttttttttgg cctgtgttta taagtgcact tgatcataat
     5701 atcacatgag gtaataaggg aggcgtcaac aggagtcacc tcacatccca gaccatggtt
     5761 cagtgaggtt ccccttgact ttttatgttt ccttctttat atctatctta tttctgctag
     5821 gatgctacac aggattttaa aataaatatg tcacattctg tggtctttga atgccagggt
     5881 tgtggtataa tattttacag tgaaatttca aagagaatcc tggtctgtga gatttacaga
     5941 ccaagggatt gtgtgtgtcc agggagggtc tgcaggtctc aaggcttagc tcacacttga
     6001 acatgcaatg actcactgtg accccaagct tttgcatgac tttcacctgt cacagctcaa
     6061 atgcccatcc tggaagaggt ttccacatta ctctgggcgc taaattcgga agtgtcactg
     6121 tcctagtgca agataaaaca aaaattaaaa gtgtccttaa atacttaaaa acataaattt
     6181 tttacaaaaa caatcctact caatgccaaa tttctcagtg cttggagaca ttaaatctat
     6241 actttaaata tgagtttaaa ttttgccaca aaaatggtga gatccacagg tttgctagac
     6301 tacagcagca ttacgttaat ttacagtctc taccactcca catacacagt ctgagtagtt
     6361 tacatttgca ttctttaatc caaaaggaaa cttgttctgt ggttttaaat gctaccttca
     6421 ttcaccagtg cgggtagact cataaaactc agatgtactt ccacaaaatt ttattggcct
     6481 ttttgtaagg gatgaaggga attgagatag tttcctttaa agagaggaac ttttctctta
     6541 tttttatctc caactgctgt ggtcctggta tttttttttc ttcttcctct tcattcattt
     6601 ggctatgaga aggactatta agtccaatca cacagggttc tctttggagt aaaatattta
     6661 ttacagtgat tttgtttcct ggacaaaaca aacaaacaaa caaacaaaaa acaaacaaac
     6721 aaaaaaaccc tctaaatatc aaacatgaaa agcaaagcta gaaaattaaa atggcgtgaa
     6781 tggttttata cattttgacc gaatttacct gtgactttca gaatgttaac aacatctttg
     6841 gatatgtttc tgttttagat ttttcctttc agatattttc agtttcttgg tctgcctggc
     6901 ctctgtaaat gtgttgaatg atagagctat caggcatgct aaggcaacac tctctgaggt
     6961 ctttattcca gcagaaatga ggaaggagct gaaaaacgtg cctctctggc ctactgcgcg
     7021 gcccattttc attctattgc tcatgaagca ttgcagaacc tgaacactta gtaactccca
     7081 aagcctggac tacaggtgac agtcacagca cctgcaagaa caaaagcgtg ggcttaccga
     7141 tggtgaccac attttattag ccctttggtg ttcattgtca tagagctgta tttgaacatt
     7201 gatgctttgg gccaagactt gaatggccac cgtttcaata gttgccactg tttttgtccg
     7261 catagagttt ttctgaacta caacaagcaa aactgtattt tgtcaaatgt cacaaaagtg
     7321 aaactgttac taatcttaga tgtgttgcat attttgtgtt tcttttccaa actctttcac
     7381 tagctgcggt gacaaagctg tttggctgta ttgacagcat gtggtgtctt ttccagaagc
     7441 aactctagga gagccagtgt ctactgtgga ctcctcacat ccccattaca gggtcaccaa
     7501 caaaactgaa atggcaattt atatgctgta attttttttc cctgagaatc aaaggggatg
     7561 gcgccaggcc tggctattag tcactagtgt gtagtactgt gatcagaagt aggaagttta
     7621 tcttgcatag aataattgtg gtttttgagg cagctcctca ttgctttttt tttttccttt
     7681 tgctgtgaag atcatggatt tggggtgtcc tcacgaagtg ggcctaagac agtaacgttg
     7741 caacttcatg tcttcgaacc taccatgtat ctgaaccatg tatctgaacc caaagattaa
     7801 aaaaaaaaaa aggcaggaag catcctcgac aggcctaagc tccctgcccc ttatcagtat
     7861 taacttcagc aggagttata tcttttttcc acaaagttcc accatttgat tctattatat
     7921 atcagagaac ctgctaatga ctttcttttt gggaatagaa atatgtgtca aatactttca
     7981 ctaaaggcat gggtataatg aatatgcccc tttgtttcaa atttatctga ctcattaaaa
     8041 aaaaaaaaga agaagaaaga aaagaaaaga aatgattcag accgaaattc cagaattggg
     8101 aaagttgtac aataacctta aaattggata catttctagt cagtaatgaa ccaactagag
     8161 ttctgatgaa tgcatgatat ttaaagggaa taagccaaat gtcatgccac aagacccttt
     8221 cccaaaacac aagcattctg ctcaaatgtg gagacagcaa ttctaatgtt cctttgttgc
     8281 caagcatggg gagtggaaag atggagaata accaggacac acccaccagg gcttcctggg
     8341 agaaaagctg agaacagaag cccccaacaa gggcctctcc tagatgcttc ctgctcccat
     8401 agaaaacttc tcgataacag ggaaataccc aagtgtcaaa attccactat cagggaaacg
     8461 gctgtctcct tctctacacc acatgaagaa cagaatttct gttcttcgta accaggtctg
     8521 attggtacag acactccaat aaatcatgac ctagaagtat tgtcagcatg gacaggtaga
     8581 gaagtgctga ctcattttcc taagcccaaa cttggaaata tgggtgatat atttccctcc
     8641 tcctataaag gagagtttca aacctatttc attttgttct gtttattttg ggaaggtaca
     8701 tgggggtgtt ctttcaaatg attcatttag ttttttcaaa cccataccac tctcaatgtt
     8761 catttgatgt gttcaaagcc aaaaaaaata tgaaataaca ttttaagcag agctgaacac
     8821 taactcggac atgaagctga aggagtgagc aagccacagg agagggtcta agcgaagcat
     8881 ggccttggct tcataccaca ctttttgtgc cttgtattat cagtgtaaat tctgaatgtt
     8941 gtacagtaaa tacttggatg gactccttag caaggatgca ccggcttctt ttttcagcac
     9001 atgtacatat ctataaatat atatacatat atatttggta atgccaaaca gctatgttat
     9061 attgtactga acaaaatggc ccgtttggat gttttatgta gagtttgcaa aaaaaccaaa
     9121 atggatggtt attgactttt cgagataaat gtacaggcat aaattactgc ttaccagtta
     9181 tttatgaata aagagtcttt tcttgaca
//
