LOCUS       NM_026123               1322 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus unc-50 homolog (Unc50), transcript variant 1, mRNA.
ACCESSION   NM_026123
VERSION     NM_026123.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   de Chaldee,M., Brochier,C., Van de Vel,A., Caudy,N.,
            Luthi-Carter,R., Gaillard,M.C. and Elalouf,J.M.
  TITLE     Capucin: a novel striatal marker down-regulated in rodent models of
            Huntington disease
  JOURNAL   Genomics 87 (2), 200-207 (2006)
   PUBMED   16359841
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC084390.1, AK135885.1 and AW124245.1.
            
            On Oct 7, 2017 this sequence version replaced NM_026123.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC019484.1, AY017214.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                AC084390.1         111985-112027
            44-1307             AK135885.1         3-1266
            1308-1322           AW124245.1         1-15                c
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 15.46 cM"
     gene            1..1322
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /note="unc-50 homolog"
                     /db_xref="GeneID:67387"
                     /db_xref="MGI:MGI:1914637"
     exon            1..355
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /inference="alignment:Splign:2.1.0"
     exon            356..639
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /inference="alignment:Splign:2.1.0"
     CDS             360..1139
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /note="PDLs22; periodontal ligament-specific protein 22"
                     /codon_start=1
                     /product="protein unc-50 homolog"
                     /protein_id="NP_080399.1"
                     /db_xref="CCDS:CCDS14892.1"
                     /db_xref="GeneID:67387"
                     /db_xref="MGI:MGI:1914637"
                     /translation="MLPSTSLSSSMHGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQM
                     DFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFV
                     LDMGFFETIKLLLWVVFIDCVGVGLLISTLMWFVSNKYLVKRQSRDYDVEWGYAFDVH
                     LNAFYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLIAVGYYIYVTFLGYSALPF
                     LKNTVILLYPFAPLMVLYGLSLALGWNFTHTLCSFYKYRVK"
     exon            640..760
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /inference="alignment:Splign:2.1.0"
     exon            761..900
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /inference="alignment:Splign:2.1.0"
     exon            901..1002
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1308
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1288..1293
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /note="hexamer: AATAAA"
     polyA_site      1308
                     /gene="Unc50"
                     /gene_synonym="1110002A21Rik; GMH1; UNCL; URP"
                     /note="major polyA site"
ORIGIN      
        1 tgcgtgtccg taacgtaaat acagagcgcc gcaagtgcgg gctacgtagc gggaagggaa
       61 gtggccccag cggcggctgg gctcggctgc cctgggaagg tggcggtagt cccgggccca
      121 ggacgaggcc tcgagggcct tcaggtgcgg cctgctctgt gtgcgcaggg tggcgttcgt
      181 gccgtcggcc gtttccacgg ttagctcgcg acctggcgtc tcagcggctg ggcgagggac
      241 cggccggcgc ccggcagctc gagtcctagg cccgccgtgg agctgctggg taaaaccaaa
      301 gacagccgct tacgtgggaa tcgcaggatt agagccgttt ttctattcta agcaggaaga
      361 tgctaccaag tacttccttg agttcttcga tgcacgggaa tggagtatta aattccaggg
      421 atgcagcaag gcacacggct ggagcaaaac gctacaagta cctcagaagg ctctttcgat
      481 ttcggcagat ggactttgag tttgctgcat ggcagatgct ctacctgttt acctctcctc
      541 agagggttta tagaaacttt cactaccgga agcaaacaaa ggaccagtgg gccagagatg
      601 accctgcctt cttagtcctc ttaagtatct ggctctgtgt gtccaccata ggattcggct
      661 ttgtgctgga catgggattt tttgagacaa taaagctgct gctgtgggtt gtgtttatag
      721 attgtgtggg tgttggcctt ctgatctcaa cgttaatgtg gttcgtctcc aacaagtacc
      781 tggtgaaacg ccagagcagg gactatgacg tggagtgggg ctatgccttt gatgtgcatc
      841 tgaacgcctt ctatccgctc ctcgtcattc tgcattttat ccagctcttc ttcatcaacc
      901 atgttattct cacagataca tttattggat atttagttgg aaatacctta tggttgattg
      961 ctgttggcta ttatatctat gtgaccttcc tgggatacag tgcactgcca tttttgaaaa
     1021 atacagtgat cctgctctat ccattcgcac ctctcatggt gctgtacggg ctgtcgctgg
     1081 cactgggatg gaactttacc cacacattgt gttccttcta caagtacaga gtgaagtgag
     1141 catcctagag aaactgtctg gtgttgggaa gggatgagtt cttgtaaatc tgtaaatagc
     1201 ttcaataaga tgtaaagttt tacaaattca aggtgatatt aacacttgtg tagaacattc
     1261 cttaaaacta attaaatgta catttctaat aaatattttt aaactaaaaa aaaaaaaaaa
     1321 aa
//
