LOCUS       NM_001302354            2186 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus UMAP1-MVP12 associated (UMA) domain containing 1
            (Umad1), transcript variant 2, mRNA.
ACCESSION   NM_001302354 NR_033518 XM_001474303 XM_001475330
VERSION     NM_001302354.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Cajigas I, Chakraborty A, Lynam M, Swyter KR, Bastidas M, Collens
            L, Luo H, Ay F and Kohtz JD.
  TITLE     Sox2-Evf2 lncRNA-mediated mechanisms of chromosome topological
            control in developing forebrain
  JOURNAL   Development 148 (6) (2021)
   PUBMED   33593819
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Cajigas I, Chakraborty A, Swyter KR, Luo H, Bastidas M, Nigro M,
            Morris ER, Chen S, VanGompel MJW, Leib D, Kohtz SJ, Martina M, Koh
            S, Ay F and Kohtz JD.
  TITLE     The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially
            Organizes Megabase Distant Genes in the Developing Forebrain
  JOURNAL   Mol Cell 71 (6), 956-972 (2018)
   PUBMED   30146317
REFERENCE   3  (bases 1 to 2186)
  AUTHORS   Hackney JA, Charbord P, Brunk BP, Stoeckert CJ, Lemischka IR and
            Moore KA.
  TITLE     A molecular profile of a hematopoietic stem cell niche
  JOURNAL   Proc Natl Acad Sci U S A 99 (20), 13061-13066 (2002)
   PUBMED   12226475
REFERENCE   4  (bases 1 to 2186)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY291850.1, AK009885.1, CF165156.1 and BQ176979.1.
            
            On Oct 11, 2014 this sequence version replaced NR_033518.1.
            
            Transcript Variant: This variant (2) lacks an alternate in-frame
            exon, compared to variant 1. The encoded isoform (2) is shorter
            than isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660813.210459.1, AK009885.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               BY291850.1         2-143
            143-336             AK009885.1         1-194
            337-337             CF165156.1         197-197
            338-2167            AK009885.1         196-2025
            2168-2186           BQ176979.1         1-19                c
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 3.53 cM"
     gene            1..2186
                     /gene="Umad1"
                     /gene_synonym="Gm16039"
                     /note="UMAP1-MVP12 associated (UMA) domain containing 1"
                     /db_xref="GeneID:100036521"
                     /db_xref="MGI:MGI:3840148"
     exon            1..206
                     /gene="Umad1"
                     /gene_synonym="Gm16039"
                     /inference="alignment:Splign:2.1.0"
     exon            207..315
                     /gene="Umad1"
                     /gene_synonym="Gm16039"
                     /inference="alignment:Splign:2.1.0"
     CDS             234..635
                     /gene="Umad1"
                     /gene_synonym="Gm16039"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="UBAP1-MVB12-associated (UMA)-domain containing
                     protein 1 isoform 2"
                     /protein_id="NP_001289283.1"
                     /db_xref="CCDS:CCDS80488.1"
                     /db_xref="GeneID:100036521"
                     /db_xref="MGI:MGI:3840148"
                     /translation="MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGS
                     QALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISD
                     LPDHVLSYDVGDNLSRFWYDFTLENSVLCDL"
     exon            316..377
                     /gene="Umad1"
                     /gene_synonym="Gm16039"
                     /inference="alignment:Splign:2.1.0"
     exon            378..2174
                     /gene="Umad1"
                     /gene_synonym="Gm16039"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagtactg gtagactgcc tagtgacgcg cggcgttccg gaagtcactg gggccgaaac
       61 ccggcgggca gtggaggcgg gacttagagg ggcgggggct gaggcctggg acccgggatc
      121 tggagcggcc gaacgtcgac ttgaccccgg aagtaagctg aaggaccgtg gtgggtggcg
      181 agctgcgggc tgcggcggag tctcagatag cagcagcagc ggcggcggcg gctatgtttc
      241 acttcttccg aaagcctgca gaatccaaaa agccctctgg gccggaaccg gaagcagatg
      301 gatttgtcct cttaggagct acagcaaatg aagtgagatg taaaacttct gaagcagaag
      361 gcagccaggc tttggagacc ggcaaagaag acacatccag cgtgactgta tcaggccccg
      421 agacagagaa tcagacaggc cagactctgc agaacaactc actaacagct gagctcctga
      481 gcgatgtgcc cttcaccctg gccccacatg tgctggcggc acagggcacc atcagcgacc
      541 ttcctgacca cgtactctca tacgatgtcg gcgacaactt gtcccgattc tggtatgatt
      601 tcactcttga aaattcagtc ctctgtgatt tgtagtcttt gtgtctatgc ataccctagc
      661 agctttaaag gaaatgaggc tgcccatttt attgaacctg tgtgatgttc tttgtcattt
      721 cactggtggc ggccttgagg caagcaagga tcataaaata aataaaatag catcatattc
      781 atggttttat cttcaaaatc aagtgaattt atataaaaat taaagtcaat ttaatgaatg
      841 gaactgactt tgggaaaaaa tatggattca gaccactcat atttccccat gtgataaaag
      901 tccaattgtg gagagtatat gagaggcaca gggtgttttt gctgacacaa cagtgaaaga
      961 gaaacaagaa cttccctcgc tcagttacca aggctcagca acctgagcat ggagcgggtg
     1021 tgaagggcct gggttcagag gaggctatgg tcctatgcag ttactctcac agtgtttatg
     1081 aatgaggtca gacaaaccac tagggaaaat tgaaacctct tcgaaacacc agcccttctt
     1141 tgctgattca agactaaggg agatgctttg gttttcttag actcatgtgg ccctctccac
     1201 cctcctgaag gatcgctgtg tccttcttta ttctcatccc tgctgagtgt gttgaagccc
     1261 tttctagaga actgtcctgt gggtccttcc tgaccacgtg tgttcccagc tcgtgggtct
     1321 gcttctgctt tcacctcttc tgcttcctag atcactgctg ataagccctg gttagaagtg
     1381 tgttggccgc agtacagtgg cagggtttga ctgttaaaca cacccagttg aatgatgctc
     1441 caattagtgt gtaggcagac acccagatag gactagaatg cccactgttt attccaagta
     1501 aagctgagca ggattgctgt cggtcagtac acgactaaga gagttggtct agagtaacag
     1561 ggccatttcc ttgccgtgaa aattttaagt catttctttt gattagttat aatttattaa
     1621 ttctgtgcca aaggttttta agtatatttt ttcacaaaga gagagtatca ggaaaactaa
     1681 acactgtgca gaaaagtaca agagtttttc taatttttat gtgctctgca tactcattta
     1741 ataaatgtgg tgtggtcttc ataaaacata ctgtgtgatt taaagttaaa gggacatttg
     1801 tgatgacaaa attatacttc ctttacagtt aacatgactg tgtgagatta aggcttcaat
     1861 taggtcttta catagttttc ataaaacatc tacataggaa atatgcctta tttttggcac
     1921 aaatgtgaac attttgtagc acttctgtga tggtacatcc tttttaacta tccatgttaa
     1981 tgtactctca aaattgaatg taaagagatt gttcttttgc ttaaaatatg tgaaaattta
     2041 tataattata catttcattt atatgtatgt cttccgtgtt acaaatgtgc ttataagtac
     2101 tttttgtcta aaattgttat atttaaagaa tgtgaattga aataaatgtt ttgattgttt
     2161 tcagatccac aaaaaaaaaa aaaaaa
//
