LOCUS       NM_178648               2817 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus UBX domain protein 8 (Ubxn8), mRNA.
ACCESSION   NM_178648
VERSION     NM_178648.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Yamabe,Y., Yokoi,A., Imamura,O., Matsui,M., Matsunaga,A.,
            Taketo,M., Sugawara,M. and Furuichi,Y.
  TITLE     Structures of mouse Rep-8 cDNA and genomic clones
  JOURNAL   Gene 227 (1), 39-47 (1999)
   PUBMED   9931425
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK161397.1, AK132565.1 and BY613198.1.
            
            On Jan 28, 2006 this sequence version replaced NM_178648.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660811.66111.1, AK132565.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-9                 AK161397.1         396-404
            10-1680             AK132565.1         3-1673
            1681-2814           AK132565.1         1675-2808
            2815-2817           BY613198.1         395-397
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 20.65 cM"
     gene            1..2817
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /note="UBX domain protein 8"
                     /db_xref="GeneID:108159"
                     /db_xref="MGI:MGI:1337129"
     exon            1..127
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..873
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /note="protein Rep-8; reproduction 8 protein; UBX
                     domain-containing protein 6; UBX domain containing 6"
                     /codon_start=1
                     /product="UBX domain-containing protein 8"
                     /protein_id="NP_848763.2"
                     /db_xref="CCDS:CCDS22234.1"
                     /db_xref="GeneID:108159"
                     /db_xref="MGI:MGI:1337129"
                     /translation="MASRGVVGLFLLSALPLLCLELRRGIPSLGIKDLILLSGRIFLL
                     LALLTLVISVTTSWFNSLKPSQGHLKEGEKENEKRRRLVRERQQEAQGEKASRYIENV
                     LKPQQEMKLKKLEERFYQMTGETWKLTAGHRLLEGDEDSEFENSSQASFETINGEAAR
                     RQNLPKFSTEISPAARPLLRKEVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSW
                     NSQVLLDWMMKVGYHKSLYRLSNSFPRRALEVEGGSSLEDIGITVDTVLNVEEKEQSS
                     Q"
     exon            128..250
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     exon            251..321
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     exon            322..447
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     exon            448..585
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     exon            586..627
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     exon            628..702
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     exon            703..2817
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1370..1375
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /note="hexamer: AACAAG"
     polyA_site      1394
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /note="major polyA site"
     regulatory      1629..1634
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /note="hexamer: ATTACA"
     polyA_site      1650
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
     regulatory      2797..2802
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
                     /note="hexamer: AATAAA"
     polyA_site      2817
                     /gene="Ubxn8"
                     /gene_synonym="D0H8S2298E; Rep-8; Rep8h; Ubxd6"
ORIGIN      
        1 ggaaggggcg ggcactgcgc ccagcgagcc ctccgcgcca tggcttctcg tggcgtcgtg
       61 ggccttttct tgctctctgc tctccctctc ttgtgtctgg agctccggcg cgggatcccg
      121 agtctcggca ttaaagatct cattttgctg agtggccgga tattcctact gctggccctg
      181 cttaccttag tcatttccgt gaccacctcc tggtttaact cactgaaacc ttcgcaaggt
      241 catctgaaag aaggagaaaa agagaatgag aaaagacgga gactcgtgag ggaaaggcaa
      301 caggaagccc agggtgagaa ggccagcaga tatatagaga atgttttaaa gcctcagcag
      361 gaaatgaagt tgaaaaaact ggaggagcgg ttttatcaga tgacagggga gacctggaag
      421 ctgaccgctg gccaccgact cctagagggg gatgaagatt cggagtttga aaattcaagt
      481 caggcatctt ttgaaacaat aaacggagag gcagcaagaa gacagaactt gcctaagttt
      541 tcaactgaaa tttcaccagc tgctcggccg ctcctgagga aggaggttcc tgatttacct
      601 gaagaaccat cagaaacagc tgaagaggta gttactgttg cccttcgatg cccaaatgga
      661 cgtgttctga ggagaagatt tttcaagtcg tggaattcac aggtcttact tgactggatg
      721 atgaaagttg ggtaccacaa atccctatat agactttcca attcctttcc cagaagggcc
      781 ctggaagtgg agggaggctc gtcactggag gacataggaa taactgtgga cactgtactt
      841 aacgtggaag agaaagagca gagcagccag tagagaggct ggaagcacct gctgcccttc
      901 cacagggcgg tgttcattca agccccatgc acctggagct cctctcgtcc acaggtgtac
      961 cccgcccaca ccccgcccac accccatgga tgaggaccgc tttgcactga tggtctgtgg
     1021 cctgtcatta taatgtgaaa ggaggtaaaa agagtaagac agacctggat gcaagcctca
     1081 gccgggcatg gtgggacacg cctcaactcc cacaattttt gagttaatta gaccatcttc
     1141 aaaccaaacc aaaccctagc tcatataaga actggttcct gcttgcgtct accttaccat
     1201 aaagtatttc acaattcagt cagaatctaa ggaggatgaa gggacattct attgtatttc
     1261 taaaaactta aagaactccc agagccaact gatcctgtat agttttgact tagatctggg
     1321 gatggaggtc tggtccatga accttgggga acatagtgaa accacagtaa acaaggccat
     1381 tgttgttaag tgcatttgga atgtgaactg tcgtttgtct acaaattgat gcccttagag
     1441 catctctcaa cctgtggggt cctgtggggc tcaaataacc tgttcatagg ggtgcaccta
     1501 agaccatctg catgagattt acattgatga ttcataacag cagcaaaatt gcttataaag
     1561 tagcaataaa ataattttat ggttgggggg tcaccacaat atgaggcaat gtattaaagg
     1621 gttgcagtat tacagaggtt gaaaacttaa gtctgtctta aggtatcttt tttttttttt
     1681 cgttttccga aacgaaactg gggggcagaa gctcagctgg taatcctagg tcttgggaag
     1741 ggggcaggag gatcaggagg gttcaaggct acctgggcta catgaaaccc tctctaaaaa
     1801 ttaaagatta agaaagataa cttccgctgg gcatggatgc acacgccttt aatcccagca
     1861 ctcgggaggc agaggcaggc ggatttctga gttcgaagtc agcctggtca tacagaggga
     1921 gtctcaggat ggccagggct acacagagaa accctgtctc gaaaaaacca ccaaaccaaa
     1981 tcaaaccaaa acaatcattc tacagctaga tattaagtaa accctagagc tggtgtttat
     2041 gaccttggaa tactatcatt accactgcta ctaaataaac aggccaattc ctgtttttag
     2101 gttaaaggag acaacctagc tcagctttta aagtcccttc tgttagattt agaatatagt
     2161 tattaaagca atctacattt tgcacttaaa attatgaata aattaatatg aaccacctaa
     2221 tgaaatgctt agatatgcaa caatcgcctt ttcagtggtc taacagttat cagtattttg
     2281 actttgttct gcttttgagt gtaaactata aacaaacatt acttctgcag tacctgtgca
     2341 cataacttgg aattgaatat aaggcctggg gtgaacaccc caccaggcga atatgtcagt
     2401 acagctgcct actgttatta ctcagcagat atctgtggcc tagcaaggag ccccatactg
     2461 gcaattctat ccctcggaag gagagccagg agtatcaagg agattcaaag tctaaaaaac
     2521 aaccagccac agttctaagt atttgtataa agtttcaaaa tggcgatgct tccatttaat
     2581 gtacatcaca gttaaaaaat gtttttctct aaatcggaaa ttttatttgt tcagtacacc
     2641 aaataggatg caagcactgt catgacaaat atacagaaat atgcagctca acatccaaca
     2701 gtaatttagt ttaggaaact ttaaaggaaa tctctttaat gttatgacaa catactccca
     2761 agaatctctt cttcagttag tcatacattt caataaaata aaggattatg aattgaa
//
