LOCUS       NM_026390               4172 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus UBX domain protein 4 (Ubxn4), transcript variant 1,
            mRNA.
ACCESSION   NM_026390
VERSION     NM_026390.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4172)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   2  (bases 1 to 4172)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK029431.1, AC161809.3, AK147795.1, AK075716.1, AK148889.1 and
            BQ745792.1.
            
            On Oct 7, 2017 this sequence version replaced NM_026390.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK147795.1, AK032206.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                AK029431.1         3-45
            44-44               AC161809.3         89065-89065         c
            45-172              AK029431.1         47-174
            173-924             AK147795.1         2-753
            925-2131            AK075716.1         616-1822
            2132-2392           AK147795.1         1961-2221
            2393-3961           AK148889.1         512-2080
            3962-4134           AK147795.1         3791-3963
            4135-4172           BQ745792.1         1-38                c
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 55.8 cM"
     gene            1..4172
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /note="UBX domain protein 4"
                     /db_xref="GeneID:67812"
                     /db_xref="MGI:MGI:1915062"
     exon            1..416
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            417..519
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            520..548
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            549..667
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            668..839
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            840..933
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            934..988
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            989..1153
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1278
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..1381
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1382..1513
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1514..1716
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1717..4138
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2331..2336
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /note="hexamer: AATAAA"
     polyA_site      2352
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /note="major polyA site"
     regulatory      4111..4116
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
                     /note="hexamer: AATAAA"
     polyA_site      4135
                     /gene="Ubxn4"
                     /gene_synonym="1300013G12Rik; mKIAA0242; Ubxd2"
ORIGIN      
        1 gatacttcct tccacttcct ggagtcggaa cccgaggctt cgcgggggcg cgcacttacg
       61 gacttaccta gccgaccagg caccggggcg cgcgacccct gacgaggagt gtcgtcgtca
      121 cgtgacacag gggcgtactt ttcttgccaa gcgcgctccg gtgcgcgtcc ccagggggtg
      181 gctgtcgggc gtacgggctg gctgggtcct cagaccgggg cccggattag ccggtggttg
      241 ccggggccac gaggccaaag aaccaggagg gcggggtcgg ctgtggcacc gcggcgacga
      301 cacaccgagc gagcgcctgg gcctgaaggg gacgatgctg tggttccagg gcgccatccc
      361 ggcggccatc gcgtctgcta agaggagcgg cgcggtcttc gtggtgttcg tggcagggga
      421 tgatgagcaa tctatacaaa tggctgcaag ttgggaagat gaaaaagtga cacaagcatc
      481 atcaaacaac tttgttgcta ttaaaattga tactaaaagt gaagcctgtc tgcagttttc
      541 acaaatttat cctgtagtat gtgttccatc cagtttcttt ataggagaca gtggaatccc
      601 tttggaagta atagcgggga gtgtttctgc agatgagctt gttacaagaa ttcataaagt
      661 ccaacagatg cactcgtcaa aaggtgaagc atcagtgaca aatgacaacc agtcagaaag
      721 ttcagtatct accccatctg cctcatttga acctgatgta tgtgaaaatc ccgagtccaa
      781 aaatacagag ctttgtgaga caccagctac ctctgacaca aagtcagata ctgcaacagg
      841 aggagaatgc acaggtcatg acagccactc tcaggagcct catggatgtt caaaccagag
      901 accagccgag gacctcaccg tcagagtaga aagactaaca aaaaaacttg aagaaaggag
      961 agaagagaag cggaaggaag aagcacagag agagattaag aaggaaattg aaaggagaaa
     1021 aactggaaag gaaatgttgg attataaaag aaaacaagaa gaagaattaa caaaaagaat
     1081 gttagaagaa agaagcagag agaaggcaga agatagagcg gctcgagagc gcatcaagca
     1141 gcagattgcc ctggatcgtg cagaaagagc tgctcgtttt gcaaagacaa aggaagcaga
     1201 agctgccaaa gctgctgcct tgctgaccaa acaggcagga acggaagtca agagagagtc
     1261 tacagcacga gacagaagca ccattgcaag aattcagttc cggctgcctg atggttcttc
     1321 ctttacaaac cagtttcctt ctgatgctcc tctagaagaa gcgaggcagt ttgctgcaca
     1381 gaccgtgggc aacacctatg gcaatttttc attagccacc atgtttccca gaagagagtt
     1441 caccagagaa gactataaga ggaggctgct ggatctggag ctcgccccca gcgcctctgt
     1501 ggtgctgctg ccagcaggac ggccagccac atccattgtc cactcttcta gtggagacat
     1561 ttggacatta ctggggacgg tgctttatcc attcctggcc atatggagat taattagcaa
     1621 ttttttattt agcaatcctc ctcctgcaca gacttcagca agagccacat ccacagagcc
     1681 ttcaaactct gcatcatcca gcaaatcaga gaaaagggaa ccagtccgaa aaagaatgct
     1741 ggaaaaacga ggggaagact ttaaaaaaga agggaaaata tacagactga ggactcaaga
     1801 tgacggtgaa gacgagaaca acacttggaa tggaaactcc acgcagcaga tgtagggtag
     1861 cgagcagtgc agattctcac tgtttcctta ggactccact cagcgagact gctgctggag
     1921 aagtgggtca gctttatgtt ttcagaccgt gtatagtctt tatttctgct aagaggtttt
     1981 gagttaagtt gtttaacctg aaaaagtcaa acatgaaata gctggatgct aggtccttgt
     2041 gtagggtaac cagctgttga gcctagaaga atcccaaggc caccctgcca ccaccgctcc
     2101 tactcagact ccacagcccc tagcccagtg tttcatttag gatacttttt gctgcaagat
     2161 tctcaagcca cacacagtaa ctggtatgtc actgagtagt ctgagccccg agcacctcag
     2221 cgagctaatc aggtgataac tgatgtttag cgtttctctt tgcactcatc agcctcaaaa
     2281 acaaaacaaa aaaaaaaaat cttgtagttt ttgatcttac ttaaatatca aataaaaaaa
     2341 gtttccaaaa aaccagaatg atcttatttt tgctgtaagc atctttgttg tacagggctg
     2401 tatcgaggtc acttttgtct gactttttcc tcccagtgct gccctgaaga tgtcagcaaa
     2461 ataactgagt acctttattt agaaaaataa aatgtagaaa ctctgtgtcc taggttactg
     2521 atgcatctgt tttataacct gttctcatcg atgccaggca gatgagaatg gccagtctgc
     2581 ggcttagatt gctcactaat attcctgctg aaatctcaca tgcagcagtc acacttgcca
     2641 ggccaaagtc cagtactgta ggactagggt agagaggaga cacttcaccc ccattattcc
     2701 tgaaagttgt gatgtttgaa ccgtggggta tgttttgctg tacttctggt tttaaaatgg
     2761 aaagtcaacc tgaccctgcc tgtgtcagac aggaagaact cctctcccct gcggagtaac
     2821 acgcgtgttg cgtgtgagct gtggtgctgg cgggaagcag ggggcagcta aagtgctgga
     2881 gtaacagaac cttcctgaaa acatgcctag gaactttaaa tatttcatat tttgacacaa
     2941 tagctttttc taagtaatga tcctcattgc agaagtttag ctatgaatag tcctaatatt
     3001 agttaactta aaaactgaaa acaacaaaat gccttctgtg gatgtaattc ctgttgagaa
     3061 atggaacata ctaatccagc acatgtttat tgaatgtctg ctatgttggt ggaaagaagg
     3121 caggaagcat agctgtaggc acaggatgag ttgagctttg taaattgtgt gtgtagaggg
     3181 cagcgtgcta atgtatatgt aaagagaaga acacgctaat gatgtatgtc cttggagttc
     3241 tcttgcagtc ttctgcattg atcacatttg ttaacactat ttaaagaagt tgtttgccag
     3301 gcatggtggc tcacacgtaa aatcccagcg cttaggaatc aggtgcagga gtttaagggc
     3361 caggctggtc tacatagcaa gttcaggcca gggctacaag gtcaacaaca acaacaaaaa
     3421 tgcaagcttt taaaactttg taggaaccat ctcatctaag atccagtcat ctaaaaacac
     3481 agcaagctgg gcgtggcatc ttgttcctgt acagtacttg ggagatgggg cagggctctc
     3541 aaagctcaag gttatcctca ggtccaggct caagtccagc ctaggcagag tgagatctgt
     3601 ctctgcaata acgaggcaat atatgagttt taagaaatac ttgttaatgg tatgaatcct
     3661 ggaaaaacat taattacctc aagtcaattt gtcttgaaga aaatcaaata caagtcttaa
     3721 aatgtccata gttcatgtgt gagtaacagg atcactcttc aacgttatct cttttaaaag
     3781 tacacatgga gctgggcgtg gtggcgcatg cctttaatcc cagcactagg gaagcagagg
     3841 caggtggatt tctgagttcg aggccagcct ggtctacaaa gtgagttcca ggacagccag
     3901 ggctattcag agaaaccctg tctccaaaaa gccaaaagaa agaaaaaagt acacatggtt
     3961 gaaaaaaacc ccagaatgta agaaaagggt gtctctgtcc cagcgtccta ccccactgcc
     4021 actacccaga ggtaacctct agtcataatt tctaatgtca tttttagaaa aattttatgc
     4081 atataatcaa atatgtaatc tttattttta aataaatggg atcatattgt atgtactaaa
     4141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
