LOCUS       NM_026257               1577 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus UBX domain protein 11 (Ubxn11), transcript variant 1,
            mRNA.
ACCESSION   NM_026257
VERSION     NM_026257.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Aksu,S., Koczan,D., Renne,U., Thiesen,H.J. and Brockmann,G.A.
  TITLE     Differentially expressed genes in adipose tissues of high body
            weight-selected (obese) and unselected (lean) mouse lines
  JOURNAL   J Appl Genet 48 (2), 133-143 (2007)
   PUBMED   17495347
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Katoh,H., Harada,A., Mori,K. and Negishi,M.
  TITLE     Socius is a novel Rnd GTPase-interacting protein involved in
            disassembly of actin stress fibers
  JOURNAL   Mol Cell Biol 22 (9), 2952-2964 (2002)
   PUBMED   11940653
REFERENCE   3  (bases 1 to 1577)
  AUTHORS   Brady,K.P., Rowe,L.B., Her,H., Stevens,T.J., Eppig,J.,
            Sussman,D.J., Sikela,J. and Beier,D.R.
  TITLE     Genetic mapping of 262 loci derived from expressed sequences in a
            murine interspecific cross using single-strand conformational
            polymorphism analysis
  JOURNAL   Genome Res 7 (11), 1085-1093 (1997)
   PUBMED   9371744
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK048494.1 and AL670680.6.
            
            On Nov 29, 2011 this sequence version replaced NM_026257.2.
            
            Transcript Variant: This variant (1) represents the longer,
            protein-coding transcript.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK048494.1, AK015720.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-286               AK048494.1         2-287
            287-1569            AK048494.1         289-1571
            1570-1577           AL670680.6         147532-147539
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 66.5 cM"
     gene            1..1577
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /note="UBX domain protein 11"
                     /db_xref="GeneID:67586"
                     /db_xref="MGI:MGI:1914836"
     exon            1..66
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            67..170
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..1554
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /note="socius; UBX domain containing 5; UBX
                     domain-containing protein 5"
                     /codon_start=1
                     /product="UBX domain-containing protein 11"
                     /protein_id="NP_080533.1"
                     /db_xref="CCDS:CCDS18763.1"
                     /db_xref="GeneID:67586"
                     /db_xref="MGI:MGI:1914836"
                     /translation="MSSPLASLSKTRKVPLESESVNPGRRGIRVYGNEDEVDMWNDGQ
                     DSEEKISLPSCYGGIGAPVSRQGPHDSELMASMTRKLQELEQQLQAQNDEMLSKERKI
                     LDLEDLVQTLQQHQNNAALQRQEELETQCIQLQRQIGEMERFLSDYGLQWVGEPMDQE
                     NSEEKTVSENDERDWMKAKKFWKPGDSFVPPEVDFDKLMASLQDLSELVEGEAQVTPV
                     PGGARFRTLEPIPLKVYRNGIMMFDGPFRPFYDPSTQRCLRDILDGFFPSELQRLYPD
                     GVPFKVSDLRNQIYPEDGLGQFPGEGRVVGRQKMRKVTDRVEETSGSRMTAEQFLNRL
                     PKCIIRQGEVIDIRGPIRDTLQNCCPMPARIQEIIVETPALASERQRSQESPDMPMPL
                     LSMLRIKSENGEQAFLLMMWPEDTIGDVRKLLAQARDMDSAAFEILSTFPPTVYQDDT
                     VTLQAAGLVPNATLLLRTRRALLSNPISRPGSLP"
     exon            171..199
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            200..298
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            299..393
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            394..448
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            449..525
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            526..652
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            653..864
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            865..942
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1063
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1167
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1241
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1382
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1383..1577
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1554..1559
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /note="hexamer: AATAAA"
     polyA_site      1572
                     /gene="Ubxn11"
                     /gene_synonym="4930506L07Rik; D4Bwg1540e; Soc; Soci;
                     Ubxd5"
                     /note="major polyA site"
ORIGIN      
        1 ctggtcgcct gggaaacccc gagacaacaa gatggcggcg ccgcgggacg gctcgctggc
       61 cccgtggagt ccctgacagt gaacctcaag actagagcta tgagctcacc tctggcctct
      121 cttagcaaga cgcggaaggt gcccctagag tcggagtctg tgaatcctgg gagacgaggg
      181 ataagagtct acggaaatga agatgaggtg gacatgtgga atgatggcca agactcagaa
      241 gagaagatct ctctgccttc ctgctatgga ggcatcggtg cccctgtgag taggcaagga
      301 ccccatgact cagagctgat ggcctccatg accaggaagc tgcaggagct ggagcagcag
      361 ttgcaggccc agaacgacga gatgctgtcc aaggagcgga agatcctgga cctggaggat
      421 ttggtacaga ccctccagca gcaccagaac aatgcagccc tgcagaggca ggaggagctg
      481 gagacacaat gcattcagct gcagcggcag attggtgaga tggagcggtt tctcagcgac
      541 tatggcctgc agtgggtggg cgagcccatg gaccaggaga actcagagga aaagacagtc
      601 tctgaaaatg atgagcgaga ctggatgaag gccaagaagt tttggaagcc aggggattct
      661 tttgtgcccc ccgaggtgga ctttgacaaa ctgatggcca gtctacagga tctgagtgag
      721 ctggtggagg gagaggccca ggtgactccg gtgcctggtg gggctcggtt ccgtacccta
      781 gagcccatcc cgctgaaggt ctaccggaat ggcattatga tgtttgatgg gcccttccgg
      841 cccttctacg atccctccac gcagcgctgc ctccgggaca tactggatgg cttctttccc
      901 tcagagctgc agaggctgta tcctgatgga gtccccttta aggtaagtga cctgcgaaat
      961 cagatctacc cagaggatgg tctgggccaa ttcccaggtg agggtcgtgt ggtgggccgg
     1021 cagaaaatgc gcaaggtcac agacagggtg gaggagactt caggctccag gatgactgct
     1081 gaacaattcc tgaacaggct tcccaagtgt ataatccgac aaggcgaggt gattgacatc
     1141 cggggcccca tcagggacac cttgcagaac tgctgcccaa tgcctgcccg gatccaggag
     1201 atcatagtgg agacacctgc cttggcttct gagcggcaga ggagccagga gtcacctgac
     1261 atgccaatgc ctctgctctc catgcttcgc atcaagtccg agaacggaga gcaggccttc
     1321 ctgctgatga tgtggcctga ggataccatt ggcgacgtgc ggaaactctt agcacaggcc
     1381 agggacatgg attcagctgc ctttgagatc ttgagcacct tcccgcccac ggtctaccag
     1441 gacgatacag tgactctgca ggccgcaggc ctggttccca atgcaacgct gctgttgcgg
     1501 acccgcagag ccctgctgtc gaaccccatc tcccgcccag gctcactgcc ctgaataaag
     1561 tgccgcccct gacataa
//
