LOCUS       NM_178671               2938 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus UBX domain protein 10 (Ubxn10), transcript variant 2,
            mRNA.
ACCESSION   NM_178671
VERSION     NM_178671.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2938)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2938)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2938)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK077656.1 and AK161245.1.
            
            On Oct 25, 2013 this sequence version replaced NM_178671.4.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1, 2, 3 and 4 all encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK161245.1, AK077656.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-787               AK077656.1         3-789
            788-2938            AK161245.1         775-2925
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 70.53 cM"
     gene            1..2938
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /note="UBX domain protein 10"
                     /db_xref="GeneID:212190"
                     /db_xref="MGI:MGI:2443123"
     exon            1..85
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /inference="alignment:Splign:2.1.0"
     exon            86..2938
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             101..934
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /note="UBX domain containing 3; UBX domain-containing
                     protein 3"
                     /codon_start=1
                     /product="UBX domain-containing protein 10"
                     /protein_id="NP_848786.1"
                     /db_xref="CCDS:CCDS18830.1"
                     /db_xref="GeneID:212190"
                     /db_xref="MGI:MGI:2443123"
                     /translation="MAIEAPVNFAPPERSTVVSTAGDSSTWQPSSLRMHVIRPKSAKG
                     RKRPNLHRPQGMGDGSPSALSSSPPPRSSGSPSNQKPGVCATVSTSQGAPDEMPELLL
                     QQAPTRTASSLNRYPVLPSINRRSLEVGAVDTVASKTSSLQLSSVQALYQEDSSQEDS
                     RTQVCALEKKFIIRTKRQSSSRASNIEEPSDEEPRLLLAVRSPSGQRFVRYFRPSDDL
                     QTVLEVAEQKNKATYQHCSIETMEVPRRRFSDLTKSLQECGILHKSVLGISQEEGEAW
                     P"
     regulatory      2835..2840
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /note="hexamer: ATTAAA"
     polyA_site      2861
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /note="major polyA site"
     regulatory      2909..2914
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /note="hexamer: AATAAA"
     polyA_site      2931
                     /gene="Ubxn10"
                     /gene_synonym="5730509E04Rik; A830047D02; Ubxd3"
                     /note="major polyA site"
ORIGIN      
        1 accccttggc ggttgccagg gagacagggc tgtttaccag ctggtcgcag ccaggcaccg
       61 gaggcggatg gagctgagct gcgaggggtc ctgagaagca atggccatag aagcccctgt
      121 gaactttgca ccacctgaac gcagcactgt ggtcagcacc gcaggcgaca gctccacctg
      181 gcagcccagc tcactcagga tgcacgttat caggcccaag tctgccaagg gccggaagcg
      241 gccgaatttg cacagaccac aaggcatggg ggacggctcc cccagtgcac tatcctcttc
      301 acctccacca cggtcctccg ggtctcccag caaccagaaa ccaggagtct gtgcaacggt
      361 ctcaacatct cagggagctc ctgacgagat gccggagttg ctgctgcagc aggcaccgac
      421 acggaccgcc tcatctctca acaggtaccc ggtcctccca tccatcaaca ggaggagctt
      481 agaggtggga gccgtggaca ctgtggccag caagaccagt tccctgcagc tgagcagcgt
      541 ccaggccctt taccaagagg attcaagcca ggaagactcc agaacgcagg tctgtgcctt
      601 agagaagaag ttcatcatcc gaaccaaaag acagagctcc tccagggcct ccaacatcga
      661 ggagccgtcg gacgaagagc caaggctgct gctggctgtc cggtcaccct caggccaaag
      721 gttcgtgcgc tatttcaggc ccagtgacga cctccagacc gtcctcgagg tggccgagca
      781 gaaaaacaaa gccacctacc aacactgcag cattgagacg atggaagtgc ccaggagacg
      841 gttctccgac ctcaccaagt ccctccagga atgcggcatc cttcataaat ccgtgttggg
      901 catctcgcag gaggaggggg aggcgtggcc ctgagccctc cgcaccaggc cgaggggccc
      961 caggtctttg agcaaagaga acgaacgttg ggcaacctga agcctccaac gcaaccttgg
     1021 tttcaggtgc cacgagagcc caggtcagcc aagaccccta gggccttgtt cgtatagcaa
     1081 gtctgtggcg gtggggatga atccacacac aggaagagac ctctctagaa aactacgttg
     1141 tagccccaca ttctctccgg cagccatgag gaagttctac atccatccct agactgtggc
     1201 tgcggccagg ataatctact ttccactgct ggctccttcc agaatcttct gtcagtgcag
     1261 tgaactctgg gtctctcaaa gccaatactt ggcctttcta tacttgacac caggttaaac
     1321 tcttcccaga gaggattccc gtctagtaaa caagtggggg cttagggacc acggcactgg
     1381 cgctggcatt tcttgcaatg ctgtgtttgg acgcagcctc cctcccaagc tgcaccagca
     1441 gagacccacg agggtccctg ttggtatgag gtggcagcaa agggaagagc tatcttctgc
     1501 tgtcgcaaat ccctcagcac acatctctga aacaccttag agctagaggc ccatagaaat
     1561 ggcctctcca gccatggacc agccagggct gcttttgagt ggactgacgg ttggagcttc
     1621 tttggtatca cctgtctatg tgcaggatcc ttccaaaatg gaagtaaact acgcagcacc
     1681 ctgtttttaa gatgcacaca gctacgcttc tgcacaattt tttactaacc accccttggc
     1741 ctacttgagc acaggtaaat tattttatct cccagcctca gcgtctctct caaccttgtc
     1801 aaatgtggaa ggccagtgac cccaaagtgg gctctggtgt cagggcctcc gtaggagaag
     1861 gaaggcagct cgttggggct tcttccctgt gtccctgtca tgctgtgcag ccggctcact
     1921 ggcgtggaat gccccttccc gccttagcca gagctgtcac aagcactgta gagtcttgtt
     1981 tttctgggga tacagatcat ttgccaaagc tctctcatat tgcaggttca gccagacacc
     2041 cacaagtcat ctgtgtccct tgacggccaa atccccattt ggagtcagga acactgagac
     2101 cttctgggca ctttgtcccc cttggagcct gagtaccaca tgtcctgggt actgactggt
     2161 acatgcctcc cataccctca gtacccagac aaggcagggt ttaggagttg ttggagcatc
     2221 tcaaagtgtc actacctcag taacaggggc attttgtgca cgggacacca ccagcagtta
     2281 tgggtgttcc ttctagcaca ctatgccttg gtgacagcag tgatgactct caacagtgtc
     2341 atcctacccc agacacctcc cacatcacac agatcactct ggactaggac atttcctgaa
     2401 catttgcaag atttacagtc ctgcctaggt tagtggctcc tttgatggca aaggtcagct
     2461 ggaacttgac tttgaggtgg caggcccatg caactggcca cctcctccac cagtgaccac
     2521 gacagaaggg actggtagct tgaacttgga ccctccagta caggcattcc acttaccccc
     2581 aagtgtacaa ttctgccctt gatctaggta ggagcctata aaaaaatcac acacctactc
     2641 tatggtagga ataaaactcc acccacacac gcacaacttg gtgattcgaa gctttagaat
     2701 atgcttagtg gagggaggag ctcctggatt taggggtttg ctgctgctat ttggcttagt
     2761 atttgggggt ggtggggcaa agaaagggag aggcacaaag cataggactg ttttaggatc
     2821 ttccaggaga catgattaaa gctagatttg agccatcgta atcacctctc tttttttttc
     2881 ttcttggaca aaagataatg atacgagcaa taaaaactga tttgtgtgaa agcctgtg
//
