LOCUS       NM_001360216            2757 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus upstream binding transcription factor, RNA polymerase
            I-like 1 (Ubtfl1), transcript variant 2, mRNA.
ACCESSION   NM_001360216 XM_011242578
VERSION     NM_001360216.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Suzuki,S., Nozawa,Y., Tsukamoto,S., Kaneko,T., Manabe,I., Imai,H.
            and Minami,N.
  TITLE     CHD1 acts via the Hmgpi pathway to regulate mouse early
            embryogenesis
  JOURNAL   Development 142 (13), 2375-2384 (2015)
   PUBMED   26092847
  REMARK    GeneRIF: These findings indicate that CHD1 plays important roles in
            mouse early embryogenesis via activation of Hmgpi at zygotic gene
            activation.
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   3  (bases 1 to 2757)
  AUTHORS   Yamada,M., Hamatani,T., Akutsu,H., Chikazawa,N., Kuji,N.,
            Yoshimura,Y. and Umezawa,A.
  TITLE     Involvement of a novel preimplantation-specific gene encoding the
            high mobility group box protein Hmgpi in early embryonic
            development
  JOURNAL   Hum Mol Genet 19 (3), 480-493 (2010)
   PUBMED   19915186
  REMARK    GeneRIF: Reduction of Hmgpi transcript levels caused developmental
            loss of preimplantation embryos and implantation failures.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162941.5.
            
            On Jan 30, 2018 this sequence version replaced XM_011242578.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK163257.1, BC145822.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-348               AC162941.5         94176-94523         c
            349-2757            AC162941.5         87439-89847         c
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 7.04 cM"
     gene            1..2757
                     /gene="Ubtfl1"
                     /gene_synonym="B020006M18Rik; Hmgpi"
                     /note="upstream binding transcription factor, RNA
                     polymerase I-like 1"
                     /db_xref="GeneID:546118"
                     /db_xref="MGI:MGI:3588290"
     exon            1..348
                     /gene="Ubtfl1"
                     /gene_synonym="B020006M18Rik; Hmgpi"
                     /inference="alignment:Splign:2.1.0"
     exon            349..2757
                     /gene="Ubtfl1"
                     /gene_synonym="B020006M18Rik; Hmgpi"
                     /inference="alignment:Splign:2.1.0"
     CDS             433..1617
                     /gene="Ubtfl1"
                     /gene_synonym="B020006M18Rik; Hmgpi"
                     /note="HMG-box protein, preimplantation-embryo-specific;
                     HMG-box preimplantation embryo-specific protein"
                     /codon_start=1
                     /product="upstream-binding factor 1-like protein 1"
                     /protein_id="NP_001347145.1"
                     /db_xref="CCDS:CCDS40540.1"
                     /db_xref="GeneID:546118"
                     /db_xref="MGI:MGI:3588290"
                     /translation="MTSLDNQGLWSEKDILKLLECMEHNIPSDDSREFKKSQADLNWS
                     KVAFGLFSGEMCKQKWMEISYNLRKFRTLTELVQEAKFSFTKKTHKNKILTEHPDRPK
                     RPLTAYLRFYKEQRAKYCQMYPKYSNAQLTKILAEKYRQLPAEIKQRYIMDFKKEKED
                     FQKKMRQFKKRHPVSGHPKKSVVPQSHPTKVPTKSQGDIKNVKSLVKTESPRTVSSDM
                     KFQGEPRKPPMNAYHKFHQESWSSPELRHLSFRKRWVEISRRWHQVPENEKEHYSNQV
                     KRLQKQYRVKLDLWLKRLSPEEYAAYKEAKATCGKRKNMSMSGGRSSKFGRTEQSSSE
                     KGLQIKPGEVEELLDPGTDSSGTIQGHHDGAQSSRQDFTDDSEEDDSSTSSDSSSTDE
                     DD"
ORIGIN      
        1 atattctgct agcaaccttc aggtgaagat gtagaactct cagctcctcc tgcacaattt
       61 ctggctggat gctgtcatgt tcccactttg atgagacggt tctgagactc tgaacatgta
      121 agccagcctc aattaaatgt cctttataag acttgccttg gccatggtgt ctgttcacag
      181 cagtaaaacc ctaacaaaga caacagttaa aactaactct cctcacaatg tccagtctag
      241 aacactctct tcttcaactg cttgccttgt ggaactgagc aactgctaga tccttggact
      301 tccattcacg cttgctgctg accattgttg ggagttggac tatggactaa atacagattc
      361 atcaggctgt ggacttagtc tccatgtgtg tgtgtccaat cagttcaagc tgctgttgac
      421 ctgtttgcac taatgacatc acttgataac caaggccttt ggtctgaaaa agacattctg
      481 aagttactgg aatgcatgga gcataatatc ccatcagatg actccagaga attcaaaaag
      541 agccaggccg atctaaactg gagcaaagta gcttttggac tgttttcagg agaaatgtgc
      601 aaacagaaat ggatggagat ttcttataat ttaaggaagt tccgcacact gacagaatta
      661 gtgcaagaag ccaagttttc ttttacaaaa aaaactcaca aaaataaaat actcacggag
      721 catcctgacc gacccaaaag acccttgact gcctatctgc gcttttacaa ggaacagaga
      781 gccaaatact gtcagatgta ccctaagtac agcaacgcac agctgaccaa aatcctggct
      841 gagaaatacc gtcagctgcc agcagagata aagcagagat atatcatgga cttcaagaag
      901 gagaaagaag actttcagaa aaagatgagg caattcaaga aaagacatcc tgtttcaggg
      961 catcctaaga aatctgtggt gccccagagt cacccaacca aagtccctac gaagtcacaa
     1021 ggagatataa aaaatgtaaa gtctcttgta aaaacagaat ctcccagaac agtttcttca
     1081 gatatgaaat ttcagggaga acccaggaaa ccccctatga atgcatatca caaatttcac
     1141 caagagtcat ggtcaagtcc ggagctgagg catctgtcct ttaggaagcg ctgggttgaa
     1201 attagcaggc gttggcatca agtcccagag aacgagaaag agcattatag caatcaggtc
     1261 aagaggctac agaaacaata cagggtgaag ctggatctct ggctcaagag attgtctcct
     1321 gaggaatatg ctgcatacaa agaggcaaag gccacctgtg gtaagcgaaa gaacatgagc
     1381 atgtctggag gcagaagctc caagtttgga cgaacagagc agtcctcctc agagaaaggc
     1441 cttcaaataa agcctggaga ggtagaggag ctattagatc ctgggacaga ttcctcaggg
     1501 actattcagg gtcatcatga tggcgcccag tcatccaggc aagatttcac ggatgatagt
     1561 gaagaagacg actctagcac ctcctcagat tctagtagta cagatgaaga tgattaaaat
     1621 cttcctcggg ggagtcctca gatttagact ccattttagc cactttcata ttccaagtca
     1681 ctgtttagaa ccatccaagc aaaacccagg acattctcaa cagataggga actgttctgt
     1741 cctctttgta ttgttgtact ctctcgcttt tctctctcac atcctttgct actaaataca
     1801 aaggagtata gtttggggag aagggagttt gccatagcac tgcctgcatc cggttcctgg
     1861 gcttaggaag agacccaact gaacagcaca taaaatattt acattttatt tgaacaaact
     1921 ataaaacagg tcttacaaag tgaagcactg catatacatt ttaggaaggt ctcttaatct
     1981 ttgctgtggc aaacggtaaa tatcacctct gatattcaga gtaagtaaaa acacaaagac
     2041 ttagatatag ataaatccta ttttatggcc gtaactgatt tgtctgtaat acattctcca
     2101 gtaccacatt cctttaatta agttgattag ttgactctta aacatattta atgttaactt
     2161 ctcaccattt tgcttgtaaa tacgccaagc tgttctcatg aatattaact ttagaatagt
     2221 tataaacctt tgaagtttta tttttgtgtc taaatattca ttttctttat tttagttcac
     2281 atgttttaaa atttgtgcat attaaatagg taactaaata tttttataaa tatttacaaa
     2341 gtataatgta taaatcaggt taaatgtgtt tctcttcata tgtttgtata gttaagttga
     2401 aatttacatt ttaaaattta tagtacatta tccctcatat attcatgaat cattttttat
     2461 ttgttctctc aaggaaacaa ttatctttat gtacattttg caacatttcc aatattttta
     2521 cctctgaatt gcttagtctt ccagagatgt tggattaagt ataaataaaa atatcaaaag
     2581 ataagtgata aattcctgtc tttttttttt tttaatttta gctaaaattt acaggatttg
     2641 ctaccataaa tttgggttga tatatgaatt tgaattaagt tatagcattt acttatacaa
     2701 tttacttata caattaaaca actttaataa atgatgatta ttaattttgt cctactt
//
