LOCUS       NM_173784               3058 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus ubiquitin domain containing 2 (Ubtd2), transcript
            variant 1, mRNA.
ACCESSION   NM_173784
VERSION     NM_173784.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3058)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK076953.1 and BC057026.1.
            
            On Mar 29, 2018 this sequence version replaced NM_173784.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC057026.1, SRR1660815.149687.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2                 AK076953.1         1-2
            3-3058              BC057026.1         1-3056
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 18.94 cM"
     gene            1..3058
                     /gene="Ubtd2"
                     /gene_synonym="4930571L24; 9630054F20Rik"
                     /note="ubiquitin domain containing 2"
                     /db_xref="GeneID:327900"
                     /db_xref="MGI:MGI:2444752"
     exon            1..177
                     /gene="Ubtd2"
                     /gene_synonym="4930571L24; 9630054F20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..812
                     /gene="Ubtd2"
                     /gene_synonym="4930571L24; 9630054F20Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ubiquitin domain-containing protein 2"
                     /codon_start=1
                     /product="ubiquitin domain-containing protein 2 isoform 1"
                     /protein_id="NP_776145.2"
                     /db_xref="CCDS:CCDS24527.1"
                     /db_xref="GeneID:327900"
                     /db_xref="MGI:MGI:2444752"
                     /translation="MGGCVGAQHDSSGSLNENSDGTGVALGRNQPLKKEKPKWKSDYP
                     MTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPH
                     GALTECYDELGNRYQLPVYCLAPPINMIEEKSDIETLDIPEPPPNSGHESQLRLRLST
                     GKDLRLVVRSTDTVFHMKRRLHATEGVEPGSQRWFFSGRPLTDKMKLEELKIPKDYVV
                     QVIVSQPVQTPTPVEN"
     exon            178..414
                     /gene="Ubtd2"
                     /gene_synonym="4930571L24; 9630054F20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            415..3034
                     /gene="Ubtd2"
                     /gene_synonym="4930571L24; 9630054F20Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      3034
                     /gene="Ubtd2"
                     /gene_synonym="4930571L24; 9630054F20Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggcggaggct gagcggcgag agagcggcgc ctggcccgag gcggcgacgc gggagcaggc
       61 tgaggcggcg gccgggacga gcgccctgag gtggcggccg cggccccatg ggcgggtgcg
      121 tgggcgccca gcacgactct tcgggcagcc tcaacgagaa ctcggacggc acgggagttg
      181 ctctaggtcg taaccagcct ttgaaaaagg agaaaccaaa atggaaaagt gactatccca
      241 tgacagatgg acaactgcgc agcaagaggg atgaattctg ggacactgca ccagcttttg
      301 aaggccggaa agagatctgg gatgccttga aggccgctgc acatgctttt gaaagcaatg
      361 atcatgaact ggcacaggca atcattgacg gtgcaaacat aacactacca cacggtgcac
      421 tgacagagtg ctacgatgag ctggggaacc ggtaccagct gccagtctat tgcctggcac
      481 caccaatcaa catgatagag gaaaagagtg acatagagac tcttgatatt cctgagccac
      541 ctcccaattc tggacacgaa tctcagctcc gcctgcggct ctccacaggc aaagacctca
      601 ggctcgtggt ccgcagcaca gacacagtgt ttcacatgaa gaggcgctta cacgccacag
      661 agggcgtgga gccaggcagc cagcgctggt tcttctctgg caggcctctc acggataaga
      721 tgaagctgga ggagctgaag atccccaagg actatgtggt gcaggttata gtgagccagc
      781 ctgtgcaaac cccaacacca gtggagaact gagctggact tgccttcttc caagatcccg
      841 tggctccttt ttattgttac catttcttac tcttaaggcg tgaaatttat tttcactgct
      901 ctgaattccc tatgaatgga tttagttctg aggaattacc agtgaaaaat tccatctgtg
      961 atggagacca acaaaaataa taaaacacac agagccagcc tctgatactc ttataattac
     1021 aatttctaat ttgaaagaca gttaagaaat agataaccat ttattttaaa acatttatca
     1081 actgtgtaat ggctgtattt aaatgatctc gaatgtaaac agacaccaga cccatcaaaa
     1141 acagcaccaa gcaccttttg gacacagaat ttttatgaca tacatgtcaa attttttttt
     1201 ttccagaacc atcaataaca gttacaaaac ctaatctttt ttttctttta aagtggaacc
     1261 taaaagagca tagagttttg cttctcttct gggtttgtag tcctacccac caggaggcag
     1321 tgagactggg agttgtcagt gttccttccc ctcccaccaa gttctgctcc ctgttgacat
     1381 gcactcagtc ctgtggccgt catgctggca gcgggcaccc tctggcgccc tgagcagcac
     1441 gttagtaagt agttagagct tgtattctca gttgagaagt ttctagtctt gcttcatagt
     1501 aatcttaaca tatctgtgga cccaggcttg acagctagct actatgtgat gtctttgctg
     1561 accctgatgc tctgcgtgac catttctgta gcttcctggc cccgcctata tattcctggg
     1621 ccaggcaaga cagaaatgga gtatagctgc ttccagtcca gaatgaaaag caatcttctc
     1681 cttcctgcct gcagggaatg tgagtaaaac cctctctgcc tgttcctggg aaaactgtgc
     1741 ctattctaag ccttggagaa aattccaatt caaaatgttc gtgtgtgata gctaactagt
     1801 gtcatttaaa ctgcattggt gggaacagat ggtagcgcct ggctcagact ggagtgcttt
     1861 cacttaactc tgactccagt cactgtggtg gcagggttcc tcccacacct tcccaacaaa
     1921 ggtgaattaa cctccatctg cacactgggc taagggactg aacatagtaa atcaggctca
     1981 ccttctctgg agaaagctgc caagggttat atttaatctg gagcctttta aaagctgttt
     2041 ttgccaggca tgttgtacct gcctttaatc ctgggccttg agaggtagaa agaggcagat
     2101 ctcagaattt gagaccagcc tggaatacac agctagttct aggccagcca gagctactta
     2161 gtgagactgt gtcttaaaaa aaaaagttgg ttccctgaga aggggactat catgtgacca
     2221 cactgtctct gaaagtttgt gagatgtgaa cagtagatga aagaagggtc tgtgcttttc
     2281 tcagtcagga aataccaaac ctcctattcg gatataaaat gccattcata attttagtgg
     2341 cagaatgaaa cctctaagca gtttaaaatg taatttttaa gtattaaatt tcttatagcc
     2401 tgtttaaata tatctataat tataacttac atttctgaga actttaacca tttccctaat
     2461 tctgttcatc atttagtttg tgattgtatc taatttagat ttggtggtga ctgatctaaa
     2521 ttcagaagtg cacacacagc tttagcaacc aaggatgccc acatttccat gtggaggctc
     2581 tagggtattc cagtgcatct ccctcccacc atcaagaagg ttggttcatt tgtcatattg
     2641 aataacagta tctcaaagtc cgtcagttgg aaaagtggtt aaacctatta tttttctaaa
     2701 ggaaatttga tggtgtcatg aataacctga ttgttaaaag gtcttgtttc ttgagggttt
     2761 gtcctaagag atttgtgggg tcttttggtt tttgtttgtt tgtttgtttg tttaaatttt
     2821 aaaggaacat atactttgaa taacaatcct ccaggcatgg tgagaaaaaa acctaggtgc
     2881 tggaaattgt caataggtta ataacctagg tgagaaaaaa acatggtgct ggtaattgtc
     2941 aataggtcga tgtaagattg gatcaatact tgatgtgtat cattttagta tgtaggggtt
     3001 ttgtgctttt tttaaaaaaa aaaattcaac ttttaaaaaa aaaaaaaaaa aaaaaaaa
//
