LOCUS       XM_006499164            7797 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ubiquitin protein ligase E3 component
            n-recognin 1 (Ubr1), transcript variant X1, mRNA.
ACCESSION   XM_006499164
VERSION     XM_006499164.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006499164.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7797
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..7797
                     /gene="Ubr1"
                     /note="ubiquitin protein ligase E3 component n-recognin 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 29 ESTs, 947 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 32 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:22222"
                     /db_xref="MGI:MGI:1277977"
     CDS             164..5434
                     /gene="Ubr1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase UBR1 isoform X1"
                     /protein_id="XP_006499227.1"
                     /db_xref="GeneID:22222"
                     /db_xref="MGI:MGI:1277977"
                     /translation="MADEEMDGAERMDVSPEPPLAPQRPASWWDQQVDFYTAFLHHLA
                     QLVPEIYFAEMDPDLEKQEESVQMSILTPLEWYLFGEDPDICLEKLKHSGAFQLCGKV
                     FKSGETTYSCRDCAIDPTCVLCMDCFQSSVHKNHRYKMHTSTGGGFCDCGDTEAWKTG
                     PFCVDHEPGRAGTTKESLHCPLNEEVIAQARRIFPSVIKYIVEMTIWEEEKELPPELQ
                     IREKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVY
                     ATCQEAKEDIKSHSENVSQHPLHVEVLHSVVMAHQKFALRLGSWMNKIMSYSSDFRQI
                     FCQACLVEEPGSENPCLISRLMLWDAKLYKGARKILHELIFSSFFMEMEYKKLFAMEF
                     VKYYKQLQKEYISDDHERSISITALSVQMLTVPTLARHLIEEQNVISVITETLLEVLP
                     EYLDRNNKFNFQGYSQDKLGRVYAVICDLKYILISKPVIWTERLRAQFLEGFRSFLKI
                     LTCMQGMEEIRRQVGQHIEVDPDWEAAIAIQMQLKNILLMFQEWCACDEDLLLVAYKE
                     CHKAVMRCSTNFMSSTKTVVQLCGHSLETKSYKVSEDLVSIHLPLSRTLAGLHVRLSR
                     LGAISRLHEFVPFDGFQVEVLVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVK
                     CREEMYDKDIIMLQIGASIMDPNKFLLLVLQRYELTDAFNKTISTKDQDLIKQYNTLI
                     EEMLQVLIYIVGERYVPGVGNVTREEVIMREITHLLCIEPMPHSAIARNLPENENNET
                     GLENVINKVATFKKPGVSGHGVYELKDESLKDFNMYFYHYSKTQHSKAEHMQKKRRKQ
                     ENKDEALPPPPPPEFCPAFSKVVNLLSCDVMMYILRTIFERAVDMESNLWTEGMLQMA
                     FHILALGLLEEKQQLQKAPEEEVAFDFYHKASRLGSSAMNAQNIQMLLEKLKGIPQLE
                     SQKDMITWILQMFDTVKRLREKSCLVVATTSGLECVKSEEITHDKEKAERKRKAEAAR
                     LHRQKIMAQMSALQKNFIETHKLMYDNTSEVTGKEDSIMEEESTSAVSEASRIALGPK
                     RGPAVTEKEVLTCILCQEEQEVKLENNAMVLSACVQKSTALTQHRGKPVDHLGETLDP
                     LFMDPDLAHGTYTGSCGHVMHAVCWQKYFEAVQLSSQQRIHVDLFDLESGEYLCPLCK
                     SLCNTVIPIIPLQPQKINSENAEALAQLLTLARWIQTVLARISGYNIKHAKEAPAVPV
                     LFNQGMGDSTFEFHSILSFGVQSSVKYSNSIKEMVILFATTIYRIGLKVPPDELDPRV
                     PMMTWSTCAFTIQAIENLLGDEGKPLFGALQNRQHNGLKALMQFAVAQRTTCPQVLIH
                     KHLARLLSVILPNLQSENTPGLLSVDLFHVLVGAVLAFPSLYWDDTVDLQPSPLSSSY
                     NHLYLFHLITMAHMLQILLTTDTDLSSGPPLAEGEEDSEEARCASAFFVEVSQHTDGL
                     AGCGAPGWYLWLSLRNGITPYLRCAALLFHYLLGVAPPEELFANSAEGEFSALCSYLS
                     LPTNLFLLFQEYWDTIRPLLQRWCGDPALLKSLKQKSAVVRYPRKRNSLIELPEDYSC
                     LLNQASHFRCPRSADDERKHPVLCLFCGAILCSQNICCQEIVNGEEVGACVFHALHCG
                     AGVCIFLKIRECRVVLVEGKARGCAYPAPYLDEYGETDPGLKRGNPLHLSRERYRKLH
                     LVWQQHCIIEEIARSQETNQMLFGFNWQLL"
ORIGIN      
        1 agcctgcttc cgggaagccg accggaagcc gctccgggtg ctgcgacaaa cctgacttca
       61 ggggccgtcg taaaagtgtc gtccctgtcg cgtcgggccg gccacaggtt tccgctagct
      121 ggcggccggg ggtcgggaac tgcgggcgtt cgtttccctt aagatggcgg acgaagagat
      181 ggacggcgcc gagaggatgg acgtcagccc ggagcctccc ctggccccgc agcggccggc
      241 atcgtggtgg gatcagcaag ttgatttcta tactgctttc ttacatcatt tggcacaatt
      301 agtgccagaa atttattttg ctgagatgga cccagatttg gaaaagcaag aagagagtgt
      361 acagatgtca atactcactc ctttggagtg gtacttattt ggagaggatc cggatatttg
      421 cttagagaaa ttaaaacaca gtggagcgtt ccagttgtgt gggaaggttt tcaaaagtgg
      481 agaaacaaca tattcctgta gggattgtgc aattgatcca acgtgtgtgc tctgtatgga
      541 ctgcttccaa agtagtgttc ataaaaacca tcgttacaag atgcatactt ctactggagg
      601 aggcttctgt gactgtggag acacagaagc gtggaaaact ggcccttttt gtgtggatca
      661 cgagcctgga agagcaggta ctacaaaaga gagcttacat tgcccattga atgaagaggt
      721 gattgctcaa gccaggagaa tattcccttc ggtgataaaa tacattgtag aaatgactat
      781 atgggaagaa gaaaaggaat tgcctcctga actgcagata agggagaaaa atgaacgata
      841 ctattgtgtc cttttcaacg atgagcacca ttcgtatgat catgtgatct acagtctgca
      901 gagagctcta gattgcgagc ttgcagaggc acagctgcac acgactgcca tcgacaaaga
      961 gggtcgccgg gctgtcaaag caggtgtgta tgccacttgc caggaagcaa aggaggatat
     1021 aaagagtcac tcagagaacg tctctcagca ccccctccat gtggaagtgc tgcactccgt
     1081 ggttatggct caccagaaat tcgctctgcg ccttggctcc tggatgaaca aaattatgag
     1141 ctattcaagt gactttagac agatattttg ccaggcctgc ctcgtagaag aacctggctc
     1201 tgaaaatccc tgtcttataa gcagactaat gctttgggat gcaaaacttt ataaaggtgc
     1261 ccgtaagatc cttcatgaat tgatctttag tagttttttt atggagatgg aatacaaaaa
     1321 actctttgct atggaatttg tgaagtatta taaacagctg cagaaagagt acatcagcga
     1381 cgaccacgag agaagcatct ccataaccgc cctgtccgtg cagatgctca ccgtcccgac
     1441 cttggcccgg catcttattg aagagcagaa tgttatttct gtcattactg aaacgctgct
     1501 agaagtttta cctgaatact tggacaggaa caataaattc aacttccagg gttatagcca
     1561 ggacaaactg ggaagagtct acgcagttat atgtgaccta aagtatatcc tgattagcaa
     1621 gcctgtcata tggacagaac gattaagagc gcagttcctg gaaggtttcc ggtcttttct
     1681 gaagattctt acctgtatgc agggaatgga agaaatcaga agacaagttg gacaacacat
     1741 tgaagtggac cctgactggg aggctgccat cgctatacag atgcaactaa agaatatttt
     1801 gctcatgttc caagagtggt gtgcttgtga tgaagatctc ttactggtgg cttataaaga
     1861 atgtcacaaa gctgtaatga ggtgcagtac aaatttcatg tccagtacca agacagtagt
     1921 gcaattgtgc ggtcatagtc tggaaaccaa atcctacaaa gtgtctgagg accttgtaag
     1981 catacacctg ccactctcta gaacacttgc tggtcttcat gtacgtttaa gcagactagg
     2041 tgctatttca agactgcatg aatttgtgcc ttttgacggc tttcaagtag aggtcctggt
     2101 ggagtacccg ctgcgctgcc tggtcctggt ggctcaggtt gttgctgaga tgtggcgaag
     2161 aaacgggctc tcactcatca gccaggtttt ctattatcaa gatgttaaat gcagggagga
     2221 aatgtacgat aaagatatca tcatgcttca gattggagca tctataatgg atcccaacaa
     2281 gttcttgtta ctggtacttc agagatatga acttactgat gcttttaaca agaccatatc
     2341 cacaaaagac caggatttga ttaaacagta taatacatta atagaagaaa tgcttcaggt
     2401 cctcatctat attgtgggag aacgttatgt acctggagtg ggaaatgtta ccagagagga
     2461 ggttataatg agagagatta ctcacttact ttgcattgag cccatgccac atagtgccat
     2521 cgccagaaac ctacctgaga acgaaaataa tgaaactggc ttagagaatg tcataaacaa
     2581 agtggccaca tttaagaaac caggtgtgtc gggccatgga gtttatgaat tgaaagatga
     2641 atcactgaaa gacttcaata tgtactttta ccattattct aaaacacagc atagcaaggc
     2701 tgaacatatg cagaagaaaa ggagaaaaca agaaaataaa gatgaagcat tgccgccgcc
     2761 acctcctccg gagttctgcc ctgctttcag caaagtagtc aacctgctca gctgtgatgt
     2821 tatgatgtac atcctcagga ccatctttga gcgggcagtg gacatggagt ctaatctgtg
     2881 gacagaaggg atgctgcaga tggcgttcca tatattggca ctgggcttgc tggaagagaa
     2941 gcagcagctt cagaaagctc ctgaagagga agtggctttt gacttttacc ataaggcttc
     3001 aagattggga agttcagcca tgaatgctca gaatatacaa atgctcttgg aaaaactcaa
     3061 aggaatcccc caattagaaa gccagaagga catgataaca tggatactcc agatgtttga
     3121 cacagtgaag cgattaagag aaaaatcttg tttagttgtg gcaaccactt caggactgga
     3181 gtgcgttaag agtgaggaga ttactcatga taaagaaaag gcagaaagga agagaaaagc
     3241 tgaggccgct aggcttcatc gccagaagat catggcccag atgtctgcct tacagaaaaa
     3301 cttcattgaa acccacaaac tcatgtatga taatacgtca gaagtaacag ggaaggaaga
     3361 ctccattatg gaggaagaga gcacctcagc agtcagtgag gcctctagaa ttgctctggg
     3421 ccctaaacgg ggcccggctg ttactgaaaa ggaggtgctg acgtgcatcc tctgccaaga
     3481 agaacaagag gtgaaactag aaaataacgc catggtattg tcagcatgtg tgcagaaatc
     3541 caccgcccta acccagcaca gagggaagcc tgtggaccac ttaggggaaa cactggaccc
     3601 tcttttcatg gatccagact tggcacatgg aacttataca ggaagctgtg gtcatgtaat
     3661 gcatgcagtg tgctggcaga agtattttga agctgtgcag ctgagctcgc agcagcgcat
     3721 tcacgtagac ctgtttgacc tggagagcgg cgagtaccta tgcccgctct gcaagtctct
     3781 ctgcaatact gtcatcccca tcatcccttt gcagccgcag aagatcaaca gtgagaatgc
     3841 ggaggctctt gctcaacttt tgaccttggc ccggtggata cagactgtcc ttgccagaat
     3901 atcgggttat aatataaagc atgctaaaga agccccagca gttcctgtct tgtttaatca
     3961 aggaatgggg gattcgactt ttgagtttca ttccatcctg agttttggag ttcagtcttc
     4021 ggtgaaatat tcaaatagta tcaaggaaat ggtcattctc ttcgccacaa caatttacag
     4081 aattggcctg aaagtgcctc ctgatgaact agacccacga gtgcccatga tgacctggag
     4141 cacgtgtgcg ttcaccatcc aggcaatcga aaacctgttg ggagatgaag gaaaacctct
     4201 atttggagca cttcaaaata gacagcataa cggtctgaag gcgctaatgc agtttgcagt
     4261 tgcacagagg actacctgcc ctcaggtcct gatacacaaa catctggctc ggctcctgtc
     4321 agttattctt cctaacctgc aatcagaaaa tacaccaggc cttctgtccg tggatctctt
     4381 ccatgttctg gtcggcgcag tcttagcgtt cccatccttg tattgggatg acaccgtgga
     4441 tctgcagccg tcaccactta gttcttcata taaccacctc tatctcttcc atctgatcac
     4501 catggcgcac atgcttcaga tactccttac aacagataca gatctgtctt cagggccgcc
     4561 gcttgctgag ggtgaagagg atagtgagga ggctcgctgt gcatctgctt tctttgtgga
     4621 agtgtcgcag cacacagacg gcctcgctgg gtgcggtgct cccggctggt acctgtggct
     4681 ctccctgagg aacggcatca ccccttacct ccgctgtgct gcactgcttt tccactattt
     4741 acttggagta gctccgcctg aagaactgtt tgccaattct gctgaaggag aattcagtgc
     4801 actctgtagc tatctatctt tacccacaaa tttgttcctg cttttccagg aatattggga
     4861 taccataagg cccttactac agaggtggtg tggagatcct gccttactca agtctttgaa
     4921 gcagaaaagt gctgtggtca ggtaccctag aaaaagaaat agtttgatag agcttcctga
     4981 ggactacagc tgtcttctaa atcaggcttc tcactttagg tgtccacggt ctgcagatga
     5041 tgagcgaaag catcctgtcc tctgtctttt ctgtggggcc atcctgtgtt ctcagaacat
     5101 ctgttgccaa gaaatagtga atggggaaga ggttggagcg tgcgtttttc atgcgcttca
     5161 ttgtggtgct ggagtctgca ttttcttaaa aatccgagaa tgcagggtgg tcctggtgga
     5221 aggaaaagcc agaggctgtg cctacccagc cccttacttg gatgaatatg gagaaacaga
     5281 cccagggcta aagagaggaa acccacttca tttatctcgg gagcggtatc ggaagctgca
     5341 tttggtctgg caacagcact gcattataga agagattgct cggagccagg agactaatca
     5401 gatgctattt ggattcaact ggcagttact ctgagctcca gttctgcctc aagacaatca
     5461 tgagtgacat caataataaa gactgatcta aaattctaga gaactttctg aggacgggga
     5521 agtattggag ggtcttttga tccatgtcca gattcacaca cattaataaa atattcctta
     5581 atggaatatt gctttcaatt atcaaacata agcttcaagg gaaaaacaag acatagatta
     5641 atgttttatg ttctagaaca ctaaagaaat gcttgttcat ccaagtgtct atttctgcta
     5701 atatttccag aaaactcctt tcccttcata actgtcctag ttcatttcat atcacccacc
     5761 tggttaatga ggtcacatta agcatttgtg gacatttctc catctggcta acatctctgc
     5821 acctttgtat ttggtgtttc tcgagtgtag tttagcttgg gttagatctg aaaagatgct
     5881 gatcacctgt gatggtctaa agaggaattg cacaactatg cagtttcttt caattaaaaa
     5941 tttcaaaaca tgtaaacatc tttcttcttt aaggaaatat ccttattgta ccacctacgg
     6001 cttcagtcag aaacagatct aaatctctct atggagagtg ctagctgtgc tagtctggaa
     6061 agcatccttc cagtatagac ctcaagtaga ttcaggagaa tgtgctcatt acgcattcct
     6121 tatacaaaag cctgttatcc tcacctgatt ccagggagct ctgtggagtc acaagttctc
     6181 catcagttac atttcttaag gcagatttct gcagtaagat ctcgtctctt ggggccccat
     6241 cctattgtct ctcagaaaac tcttgttttg aagcaaactc tttgtagaat gggaatcaga
     6301 aaattgcccc agtgaatggt cataagagat gaaattagaa cactgtattt aagccagttc
     6361 tgcaaccttc tatggcttgt aagaaacagg tccttgattt gatgtctagg tgaaaccttt
     6421 cataaacgac tgtttatgat taatataaac aacaataaca aaaaagcaac gtaatcaggt
     6481 gtgtgtcctg ttataacctg ctgtggttga gccatcttgc gtataaataa tgcagctctc
     6541 ctgagtctgt gcatagacct cttgattctt ggctttaccg ttttatatca agaccttgtg
     6601 agtagatcag ttgatactta ttttagcttt tgtggtattg ggtaatattg cagttgaaag
     6661 atgtgtttgg agattgtctc ttcctttgcc cttggctact gctgccatgt gtgtgtctaa
     6721 gtgttttcct gccttctgtt tagtgaagac caggaagtaa aaatacattt gataagtgat
     6781 cagtgatgca catttggggc taaatttgtt gccattttta tggaatgaaa agtgggtttt
     6841 gcagtaagaa attggtgtga gcaggcacca gactcacaat catgatttcc tacttggata
     6901 aatactactc agaagaaagc aggaactaga tgcaactata atgaacagtt cacagcaatt
     6961 ataagagaca aaaatcaata aattcagtat ttggcttgtg ccatttgcca atatgattaa
     7021 gaaatttgaa cattgccctt tgttttttct ataatttttt tttgagagat tgtttagctc
     7081 tgaaatctgg gctagaatag gcaacataag atgctcattt ctgccttagt catctggccc
     7141 ccatttgcca aggataaaga ctttattttt agccttctta gattcaattt gtaaaccctg
     7201 gagctaagct ttcaagctgc taggaggact agctagcact agccaaagag cctaattcat
     7261 cactcagttc tgcttcttga gatggaagtt tctgcactgg aggtagactt aggtcacagt
     7321 gctgccccag cccacgggat ctttaatagt attcatcatg acaaatgatt taagtctgct
     7381 aagaagttta cttaagcaac caagtcactt tatgtagtgt agtgtatgaa agaattggtt
     7441 tagtgggatg gctctgactc tgtgttttta atattggtga ggggctggca aggattttaa
     7501 tgatacagta aagataaaca tatatctgta taattaattt attctgttag tgtatgggct
     7561 gtgagttcac cttttagtgg tcatttgtca tttcataaca actatgcatt ttggttcact
     7621 gtgatgatga tctatattta gtgactgcaa catgtttata ccactgattc aaattccatt
     7681 catgatgaag ttatacagat gatgcatata ttgatatctt ttattgcaaa aatgtaaatt
     7741 aaaaacttgt ataatgttct tgtgcttttt tgaaataaaa tatcttatat gtgtata
//
