LOCUS       XM_036154842            3816 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus upstream binding protein 1 (Ubp1),
            transcript variant X11, mRNA.
ACCESSION   XM_036154842
VERSION     XM_036154842.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3816
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..3816
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="upstream binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 33 ESTs, 1066 long SRA reads, 2 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 38 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
     CDS             412..1986
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /codon_start=1
                     /product="upstream-binding protein 1 isoform X4"
                     /protein_id="XP_036010735.1"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
                     /translation="MAWVLSMDEVIESGLVHDFDSSLSGIGQELGAGAYSMSDVLALP
                     IFKQEDSSLSLEDEAKHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKM
                     GDMPELSGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDT
                     RTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNEN
                     GEYTDHLHSASCQIKVFKPKGADRKQKNDREKMEKRTAHEKEKYQPSYDTTILTECSP
                     WPDTPTAYVNNSPSPAPTFTSSQPSTCSVPDSNSSSPNHQGDGAAQASGEQIQPSATT
                     QETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRP
                     RLTIYVCQEQPSSTALQGQPQAAGSGGESGGGTPSVYHAIYLEEMVASEVARKLASVF
                     NIPFHQINQVYRQGPTGIHILVSDQMVQNFQDETCFLFSTVKGTFHVCALVCCDHEGH
                     CAPIRSSHLKIMMVFT"
ORIGIN      
        1 gggaatccat tccggccgct tcgccgtgac tgcccagaag acctgtcagt cagccgagcg
       61 taaccggtca cacctcttcc gccgccaggc cgcgacaccg cgggggccgg gcagcgccgc
      121 tcggcccagg cgctagtgcc gccgcgaggc gcggggccgc gaggggcggg cctgggaggg
      181 gagcggccgc aggggcgggg ccggaggagg aggcggaagc ggcgagcgag cccaagccgg
      241 agccgcatcg aagctgcgtc cgggccggcg gagcggcggc ggcggggtga ccactcgccg
      301 cgccgccgga ggcttcaccc gcgtcctccc tcaggacgcg cccgcggagc tcgggcgcct
      361 tcgccccgga cccggaggcc gcgctgcgcg gggcggcggc gaggccggaa gatggcctgg
      421 gtgctcagta tggacgaggt gatcgagtcc gggctggtgc acgacttcga ctccagcctg
      481 tccggcatcg ggcaggagct gggcgccggc gcctacagca tgagtgatgt gttggcattg
      541 cccattttca agcaagaaga ttccagtctt tccttggaag atgaggccaa gcaccccccc
      601 ttccaatatg taatgtgtgc tgcaacttcg ccagccgtta agctgcacga cgagacactt
      661 acttacttga accaaggcca gtcttatgaa attcggatgc tggataatcg caaaatggga
      721 gacatgcctg agctcagtgg gaagttggta aagagcatca taagggtggt gttccatgac
      781 aggcggctac agtacacaga acatcagcag cttgaaggct ggaagtggaa tcgtccagga
      841 gacaggcttc tcgatttaga tattccaatg tctgtgggaa taattgacac aaggacaaat
      901 ccaagccagt taaatgcagt tgaatttctg tgggaccctg caaagcgcac atctgccttc
      961 attcaggtac attgtatcag cacagaattc accccgcgta agcatggagg tgaaaaagga
     1021 gtgcctttca ggatccaggt tgacaccttt aagcagaatg aaaacgggga atacacagat
     1081 catcttcact cagccagctg ccaaatcaaa gtctttaagc ctaaaggtgc agacagaaaa
     1141 caaaaaaatg accgagaaaa gatggagaag agaacagctc atgaaaaaga aaagtaccag
     1201 ccatcttacg acaccaccat tctcacagag tgttctccat ggcccgacac ccctacagcc
     1261 tatgtgaaca acagcccttc cccagcgccc actttcacct cctcacaacc gagcacgtgc
     1321 agtgtcccag acagcaattc ttcatcccca aatcaccagg gagatggagc tgcacaagcg
     1381 tctggggaac aaattcagcc ttcagctaca acccaggaaa cacagcagtg gctgctcaaa
     1441 aacaggttct cttcctacac aagactgttc tctaattttt caggtgccga cttattaaag
     1501 ctgacaaagg aggatttagt tcagatttgt ggtgcagccg atggaattcg gctctataat
     1561 tccctgaagt caaggtcggt taggccccgc ttaaccatct atgtctgcca ggagcagccg
     1621 agtagcaccg cgctgcaagg gcagccacaa gctgcaggca gtggaggtga aagtggcggt
     1681 gggacgccct ccgtttatca tgcaatctac ttggaagaaa tggttgcctc agaagttgct
     1741 cgaaaacttg cctccgtgtt taatattcct ttccaccaaa ttaaccaggt ttacagacag
     1801 ggccccactg gtatccacat tcttgttagt gaccagatgg ttcagaactt tcaagatgaa
     1861 acttgttttt tattctccac agtaaaaggt acttttcatg tatgtgcctt ggtgtgttgt
     1921 gatcatgaag gacactgtgc cccgattaga agctctcatc tgaaaataat gatggtattc
     1981 acataatttt gaagtgatac cttaaacgga ctgaactcta tccagtacca aataaagtca
     2041 tgcttaaaag tgtgtgaaga ctgaatccaa gaagtcttgg gattggattt tactgtgaaa
     2101 tgtttcatat tgaaaacaca agatgacctt cctaaggagc tgcaggagag gcaaatctcc
     2161 tcagtgtcac tgccacagcc ccagcatcct cgtgagagag agagagagag agagagagcc
     2221 tgtgcgagcg agcgagcatg tcaggtgaca ttcgacccag cttctaccgt ggtgggcaca
     2281 agtacttgct tccctggcaa gggccagtgg acagaacccc ccagagcagt tgctgctgct
     2341 tttcacactg tatgcagttt gaattgaatg taaaactcaa ccgtgggcat ttacctttct
     2401 gtgccagttt ggcttttgtt gcctgaacct tatgctggcc tggggaggag atagagttgc
     2461 ctctggggga gctgctctgt actgggtgac acggccgtat gggtcaggta agaggcttag
     2521 ctccttcctg aaggtggaca tcagaggggt cctgctagac ccgagccgag ccgagccgag
     2581 ccgagcagat gagcagactg cactccctgt cagccattcc gtgtgcgagg tcagtgtaag
     2641 tcctaatagg taccgaggct tgggcgtttg gcttgggctt ccagttttag cattttagtt
     2701 tctggatttc acctttgaaa cctccttgcc ttttaaactc atgtggtttc cttttctcgt
     2761 ctccccaccc cctacttgag cctccaggtg tgtatactcc cttgtcttgt gcctactctg
     2821 ttcttaaaca tgtctaaagc ccttcccaga cctcagaact agatgatggg gaaacagtat
     2881 catgtctctg atattaaagg gatttttttt ttaatgagac aaaattaccc tggaaacact
     2941 agatgtcata acaagacact aaaatgtatc ataaaccttc cccccgccca aataccgagt
     3001 ttcagtacaa tcatggctag atggtggctg gtgggggctc tgtactctgc atcgttcatg
     3061 ctttgtctgt agcaggtgtg cctgtgagtc acgcgtgcac acggccatca cctctcctct
     3121 ctctcacgac ctctcgtgag gcctgtggca tatccgagtt tttaaaaact tctttccatt
     3181 ttaattctgt agcatctttg cccatttgct tagctgctgg ctgtgaatgc gcttgtctga
     3241 cccttgttgt tcaggtgggt aggaataatt acattttaaa tgaaatctct tccagaagac
     3301 agactacttc aatgggtaaa ggctttaaca gcttgtttta ttcatactgg ggattaatta
     3361 cttgccacaa aacaaactgt ctcgataatt ttcctcttgg gtttggcagt gctgtagcct
     3421 tgcaggccct ttaggaggga gcgctcccat ccgtccttcc ctttgctttg tgtgaccaca
     3481 tgctttctgt accattcact tacttgggaa agaagtggac ttatctccta attgttttag
     3541 aattttgctt gtctatttag ctttcctttt tggatctcat gatttatgga acaataaatg
     3601 tcatttaatg ctgtgtatta ttttgaattc attatcaggt tttagaagtg gggtgaaagt
     3661 acttacaggc tcctcagact tgaacttgtg ctgagcagca caaagtgcta ggccgtctca
     3721 gtgaaactat acctggccca tggcaccagc agtctgctac tttggttata ggatgtacag
     3781 ttcagtgtaa taaatgtttt ctgattgttt tgtaaa
//
