LOCUS       XM_030244246            3331 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus upstream binding protein 1 (Ubp1),
            transcript variant X17, mRNA.
ACCESSION   XM_030244246
VERSION     XM_030244246.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..3331
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="upstream binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 30 ESTs, 1614 long SRA reads, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 38 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
     CDS             454..1512
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /codon_start=1
                     /product="upstream-binding protein 1 isoform X7"
                     /protein_id="XP_030100106.1"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
                     /translation="MSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPR
                     KHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKNDREKMEKR
                     TAHEKEKYQPSYDTTILTECSPWPDTPTAYVNNSPSPAPTFTSSQPSTCSVPDSNSSS
                     PNHQGDGAAQASGEQIQPSATTQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLV
                     QICGAADGIRLYNSLKSRSVRPRLTIYVCQEQPSSTALQGQPQAAGSGGESGGGTPSV
                     YHAIYLEEMVASEVARKLASVFNIPFHQINQVYRQGPTGIHILVSDQMVQNFQDETCF
                     LFSTVKAENNDGIHIILK"
ORIGIN      
        1 acagtacaca gaacatcagc agcttgaagg ctggaagtgg aatcgtccag gagacaggct
       61 tctcgattta ggtacaggtg gctgtcaaca ggccgtggaa atgaaggtgc tgtgtagctg
      121 tccagtaaca taatcggcac catgtaaaat ttattgcttg gatgtagtag gtgttagatc
      181 tgtgtcttga gaattgttta atgctaaagg aacgaagtag ctttgtggtg ctaaagtaac
      241 ctcaaccagg aattgtacga acttgaagct atctaaaacc tcagttggca ccgtccatca
      301 tgtttttaat gaaatgaaat ataagccatg gtgggagaaa ctgtgattct tgttaggtgg
      361 atttgatatt gaagacaagg ttgactacgg agaacgttga agggaagttc aacatggatt
      421 aattatttcc atagagcata atataatatt ccaatgtctg tgggaataat tgacacaagg
      481 acaaatccaa gccagttaaa tgcagttgaa tttctgtggg accctgcaaa gcgcacatct
      541 gccttcattc aggtacattg tatcagcaca gaattcaccc cgcgtaagca tggaggtgaa
      601 aaaggagtgc ctttcaggat ccaggttgac acctttaagc agaatgaaaa cggggaatac
      661 acagatcatc ttcactcagc cagctgccaa atcaaagtct ttaagcctaa aggtgcagac
      721 agaaaacaaa aaaatgaccg agaaaagatg gagaagagaa cagctcatga aaaagaaaag
      781 taccagccat cttacgacac caccattctc acagagtgtt ctccatggcc cgacacccct
      841 acagcctatg tgaacaacag cccttcccca gcgcccactt tcacctcctc acaaccgagc
      901 acgtgcagtg tcccagacag caattcttca tccccaaatc accagggaga tggagctgca
      961 caagcgtctg gggaacaaat tcagccttca gctacaaccc aggaaacaca gcagtggctg
     1021 ctcaaaaaca ggttctcttc ctacacaaga ctgttctcta atttttcagg tgccgactta
     1081 ttaaagctga caaaggagga tttagttcag atttgtggtg cagccgatgg aattcggctc
     1141 tataattccc tgaagtcaag gtcggttagg ccccgcttaa ccatctatgt ctgccaggag
     1201 cagccgagta gcaccgcgct gcaagggcag ccacaagctg caggcagtgg aggtgaaagt
     1261 ggcggtggga cgccctccgt ttatcatgca atctacttgg aagaaatggt tgcctcagaa
     1321 gttgctcgaa aacttgcctc cgtgtttaat attcctttcc accaaattaa ccaggtttac
     1381 agacagggcc ccactggtat ccacattctt gttagtgacc agatggttca gaactttcaa
     1441 gatgaaactt gttttttatt ctccacagta aaagctgaaa ataatgatgg tattcacata
     1501 attttgaagt gataccttaa acggactgaa ctctatccag taccaaataa agtcatgctt
     1561 aaaagtgtgt gaagactgaa tccaagaagt cttgggattg gattttactg tgaaatgttt
     1621 catattgaaa acacaagatg accttcctaa ggagctgcag gagaggcaaa tctcctcagt
     1681 gtcactgcca cagccccagc atcctcgtga gagagagaga gagagagaga gagcctgtgc
     1741 gagcgagcga gcatgtcagg tgacattcga cccagcttct accgtggtgg gcacaagtac
     1801 ttgcttccct ggcaagggcc agtggacaga accccccaga gcagttgctg ctgcttttca
     1861 cactgtatgc agtttgaatt gaatgtaaaa ctcaaccgtg ggcatttacc tttctgtgcc
     1921 agtttggctt ttgttgcctg aaccttatgc tggcctgggg aggagataga gttgcctctg
     1981 ggggagctgc tctgtactgg gtgacacggc cgtatgggtc aggtaagagg cttagctcct
     2041 tcctgaaggt ggacatcaga ggggtcctgc tagacccgag ccgagccgag ccgagccgag
     2101 cagatgagca gactgcactc cctgtcagcc attccgtgtg cgaggtcagt gtaagtccta
     2161 ataggtaccg aggcttgggc gtttggcttg ggcttccagt tttagcattt tagtttctgg
     2221 atttcacctt tgaaacctcc ttgcctttta aactcatgtg gtttcctttt ctcgtctccc
     2281 caccccctac ttgagcctcc aggtgtgtat actcccttgt cttgtgccta ctctgttctt
     2341 aaacatgtct aaagcccttc ccagacctca gaactagatg atggggaaac agtatcatgt
     2401 ctctgatatt aaagggattt tttttttaat gagacaaaat taccctggaa acactagatg
     2461 tcataacaag acactaaaat gtatcataaa ccttcccccc gcccaaatac cgagtttcag
     2521 tacaatcatg gctagatggt ggctggtggg ggctctgtac tctgcatcgt tcatgctttg
     2581 tctgtagcag gtgtgcctgt gagtcacgcg tgcacacggc catcacctct cctctctctc
     2641 acgacctctc gtgaggcctg tggcatatcc gagtttttaa aaacttcttt ccattttaat
     2701 tctgtagcat ctttgcccat ttgcttagct gctggctgtg aatgcgcttg tctgaccctt
     2761 gttgttcagg tgggtaggaa taattacatt ttaaatgaaa tctcttccag aagacagact
     2821 acttcaatgg gtaaaggctt taacagcttg ttttattcat actggggatt aattacttgc
     2881 cacaaaacaa actgtctcga taattttcct cttgggtttg gcagtgctgt agccttgcag
     2941 gccctttagg agggagcgct cccatccgtc cttccctttg ctttgtgtga ccacatgctt
     3001 tctgtaccat tcacttactt gggaaagaag tggacttatc tcctaattgt tttagaattt
     3061 tgcttgtcta tttagctttc ctttttggat ctcatgattt atggaacaat aaatgtcatt
     3121 taatgctgtg tattattttg aattcattat caggttttag aagtggggtg aaagtactta
     3181 caggctcctc agacttgaac ttgtgctgag cagcacaaag tgctaggccg tctcagtgaa
     3241 actatacctg gcccatggca ccagcagtct gctactttgg ttataggatg tacagttcag
     3301 tgtaataaat gttttctgat tgttttgtaa a
//
