LOCUS       XM_006512052            3728 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus upstream binding protein 1 (Ubp1),
            transcript variant X2, mRNA.
ACCESSION   XM_006512052
VERSION     XM_006512052.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006512052.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3728
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..3728
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="upstream binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 34 ESTs, 1066 long SRA reads, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 41 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
     CDS             57..1898
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /codon_start=1
                     /product="upstream-binding protein 1 isoform X2"
                     /protein_id="XP_006512115.3"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
                     /translation="MRRGAGGRGRAARLAARSLPPQLLARTLCPDSWASAALVSAASR
                     AAAGDHSPRRRRLHPRPPSGRARGARAPSPRTRRPRCAGRRRGRKMAWVLSMDEVIES
                     GLVHDFDSSLSGIGQELGAGAYSMSDVLALPIFKQEDSSLSLEDEAKHPPFQYVMCAA
                     TSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPELSGKLVKSIIRVVFHDRRLQYT
                     EHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVH
                     CISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGADRKQK
                     NDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDTPTAYVNNSPSPAPTFTSSQPSTC
                     SVPDSNSSSPNHQGDGAAQASGEQIQPSATTQETQQWLLKNRFSSYTRLFSNFSGADL
                     LKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCQEQPSSTALQGQPQAAGSGG
                     ESGGGTPSVYHAIYLEEMVASEVARKLASVFNIPFHQINQVYRQGPTGIHILVSDQMV
                     QNFQDETCFLFSTVKGTFHVCALVCCDHEGHCAPIRSSHLKIMMVFT"
ORIGIN      
        1 gctgtggggc ggggcgggcg gcggccgcgg gagcggcgcc gggggcgggc ggcggcatga
       61 ggcgcggggc cggcggccgc gggagggcgg cgcggctcgc ggcccggtcg ctcccgccgc
      121 agctgctggc ccgcacgctg tgccctgaca gctgggcctc ggccgctctc gtctcagccg
      181 cgtcccgcgc cgccgcaggt gaccactcgc cgcgccgccg gaggcttcac ccgcgtcctc
      241 cctcaggacg cgcccgcgga gctcgggcgc cttcgccccg gacccggagg ccgcgctgcg
      301 cggggcggcg gcgaggccgg aagatggcct gggtgctcag tatggacgag gtgatcgagt
      361 ccgggctggt gcacgacttc gactccagcc tgtccggcat cgggcaggag ctgggcgccg
      421 gcgcctacag catgagtgat gtgttggcat tgcccatttt caagcaagaa gattccagtc
      481 tttccttgga agatgaggcc aagcaccccc ccttccaata tgtaatgtgt gctgcaactt
      541 cgccagccgt taagctgcac gacgagacac ttacttactt gaaccaaggc cagtcttatg
      601 aaattcggat gctggataat cgcaaaatgg gagacatgcc tgagctcagt gggaagttgg
      661 taaagagcat cataagggtg gtgttccatg acaggcggct acagtacaca gaacatcagc
      721 agcttgaagg ctggaagtgg aatcgtccag gagacaggct tctcgattta gatattccaa
      781 tgtctgtggg aataattgac acaaggacaa atccaagcca gttaaatgca gttgaatttc
      841 tgtgggaccc tgcaaagcgc acatctgcct tcattcaggt acattgtatc agcacagaat
      901 tcaccccgcg taagcatgga ggtgaaaaag gagtgccttt caggatccag gttgacacct
      961 ttaagcagaa tgaaaacggg gaatacacag atcatcttca ctcagccagc tgccaaatca
     1021 aagtctttaa gcctaaaggt gcagacagaa aacaaaaaaa tgaccgagaa aagatggaga
     1081 agagaacagc tcatgaaaaa gaaaagtacc agccatctta cgacaccacc attctcacag
     1141 agtgttctcc atggcccgac acccctacag cctatgtgaa caacagccct tccccagcgc
     1201 ccactttcac ctcctcacaa ccgagcacgt gcagtgtccc agacagcaat tcttcatccc
     1261 caaatcacca gggagatgga gctgcacaag cgtctgggga acaaattcag ccttcagcta
     1321 caacccagga aacacagcag tggctgctca aaaacaggtt ctcttcctac acaagactgt
     1381 tctctaattt ttcaggtgcc gacttattaa agctgacaaa ggaggattta gttcagattt
     1441 gtggtgcagc cgatggaatt cggctctata attccctgaa gtcaaggtcg gttaggcccc
     1501 gcttaaccat ctatgtctgc caggagcagc cgagtagcac cgcgctgcaa gggcagccac
     1561 aagctgcagg cagtggaggt gaaagtggcg gtgggacgcc ctccgtttat catgcaatct
     1621 acttggaaga aatggttgcc tcagaagttg ctcgaaaact tgcctccgtg tttaatattc
     1681 ctttccacca aattaaccag gtttacagac agggccccac tggtatccac attcttgtta
     1741 gtgaccagat ggttcagaac tttcaagatg aaacttgttt tttattctcc acagtaaaag
     1801 gtacttttca tgtatgtgcc ttggtgtgtt gtgatcatga aggacactgt gccccgatta
     1861 gaagctctca tctgaaaata atgatggtat tcacataatt ttgaagtgat accttaaacg
     1921 gactgaactc tatccagtac caaataaagt catgcttaaa agtgtgtgaa gactgaatcc
     1981 aagaagtctt gggattggat tttactgtga aatgtttcat attgaaaaca caagatgacc
     2041 ttcctaagga gctgcaggag aggcaaatct cctcagtgtc actgccacag ccccagcatc
     2101 ctcgtgagag agagagagag agagagagag cctgtgcgag cgagcgagca tgtcaggtga
     2161 cattcgaccc agcttctacc gtggtgggca caagtacttg cttccctggc aagggccagt
     2221 ggacagaacc ccccagagca gttgctgctg cttttcacac tgtatgcagt ttgaattgaa
     2281 tgtaaaactc aaccgtgggc atttaccttt ctgtgccagt ttggcttttg ttgcctgaac
     2341 cttatgctgg cctggggagg agatagagtt gcctctgggg gagctgctct gtactgggtg
     2401 acacggccgt atgggtcagg taagaggctt agctccttcc tgaaggtgga catcagaggg
     2461 gtcctgctag acccgagccg agccgagccg agccgagcag atgagcagac tgcactccct
     2521 gtcagccatt ccgtgtgcga ggtcagtgta agtcctaata ggtaccgagg cttgggcgtt
     2581 tggcttgggc ttccagtttt agcattttag tttctggatt tcacctttga aacctccttg
     2641 ccttttaaac tcatgtggtt tccttttctc gtctccccac cccctacttg agcctccagg
     2701 tgtgtatact cccttgtctt gtgcctactc tgttcttaaa catgtctaaa gcccttccca
     2761 gacctcagaa ctagatgatg gggaaacagt atcatgtctc tgatattaaa gggatttttt
     2821 ttttaatgag acaaaattac cctggaaaca ctagatgtca taacaagaca ctaaaatgta
     2881 tcataaacct tccccccgcc caaataccga gtttcagtac aatcatggct agatggtggc
     2941 tggtgggggc tctgtactct gcatcgttca tgctttgtct gtagcaggtg tgcctgtgag
     3001 tcacgcgtgc acacggccat cacctctcct ctctctcacg acctctcgtg aggcctgtgg
     3061 catatccgag tttttaaaaa cttctttcca ttttaattct gtagcatctt tgcccatttg
     3121 cttagctgct ggctgtgaat gcgcttgtct gacccttgtt gttcaggtgg gtaggaataa
     3181 ttacatttta aatgaaatct cttccagaag acagactact tcaatgggta aaggctttaa
     3241 cagcttgttt tattcatact ggggattaat tacttgccac aaaacaaact gtctcgataa
     3301 ttttcctctt gggtttggca gtgctgtagc cttgcaggcc ctttaggagg gagcgctccc
     3361 atccgtcctt ccctttgctt tgtgtgacca catgctttct gtaccattca cttacttggg
     3421 aaagaagtgg acttatctcc taattgtttt agaattttgc ttgtctattt agctttcctt
     3481 tttggatctc atgatttatg gaacaataaa tgtcatttaa tgctgtgtat tattttgaat
     3541 tcattatcag gttttagaag tggggtgaaa gtacttacag gctcctcaga cttgaacttg
     3601 tgctgagcag cacaaagtgc taggccgtct cagtgaaact atacctggcc catggcacca
     3661 gcagtctgct actttggtta taggatgtac agttcagtgt aataaatgtt ttctgattgt
     3721 tttgtaaa
//
