LOCUS       NM_001372512            4308 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus upstream binding protein 1 (Ubp1), transcript variant
            7, mRNA.
ACCESSION   NM_001372512
VERSION     NM_001372512.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4308)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4308)
  AUTHORS   Gurdziel,K., Vogt,K.R., Walton,K.D., Schneider,G.K. and
            Gumucio,D.L.
  TITLE     Transcriptome of the inner circular smooth muscle of the developing
            mouse intestine: Evidence for regulation of visceral smooth muscle
            genes by the hedgehog target gene, cJun
  JOURNAL   Dev Dyn 245 (5), 614-626 (2016)
   PUBMED   26930384
REFERENCE   3  (bases 1 to 4308)
  AUTHORS   Lin,J.C., Lu,Y.H., Liu,Y.R. and Lin,Y.J.
  TITLE     RBM4a-regulated splicing cascade modulates the differentiation and
            metabolic activities of brown adipocytes
  JOURNAL   Sci Rep 6, 20665 (2016)
   PUBMED   26857472
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 4308)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 4308)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   6  (bases 1 to 4308)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 4308)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   8  (bases 1 to 4308)
  AUTHORS   Ramamurthy,L., Barbour,V., Tuckfield,A., Clouston,D.R., Topham,D.,
            Cunningham,J.M. and Jane,S.M.
  TITLE     Targeted disruption of the CP2 gene, a member of the NTF family of
            transcription factors
  JOURNAL   J Biol Chem 276 (11), 7836-7842 (2001)
   PUBMED   10995745
REFERENCE   9  (bases 1 to 4308)
  AUTHORS   Sueyoshi,T., Kobayashi,R., Nishio,K., Aida,K., Moore,R., Wada,T.,
            Handa,H. and Negishi,M.
  TITLE     A nuclear factor (NF2d9) that binds to the male-specific P450 (Cyp
            2d-9) gene in mouse liver
  JOURNAL   Mol Cell Biol 15 (8), 4158-4166 (1995)
   PUBMED   7623810
REFERENCE   10 (bases 1 to 4308)
  AUTHORS   Sanno,Y., Holzer,M. and Schimke,R.T.
  TITLE     Studies of a mutation affecting pyrimidine degradation in inbred
            mice
  JOURNAL   J Biol Chem 245 (21), 5668-5676 (1970)
   PUBMED   5472365
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC107803.15 and CT025531.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422598.889505.1,
                                           SRR13422597.971856.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                AC107803.15        189382-189453
            73-262              AC107803.15        189811-190000
            263-414             CT025531.9         165386-165537       c
            415-491             CT025531.9         158701-158777       c
            492-597             CT025531.9         154317-154422       c
            598-704             CT025531.9         153572-153678       c
            705-857             CT025531.9         151635-151787       c
            858-968             CT025531.9         151446-151556       c
            969-1072            CT025531.9         145730-145833       c
            1073-1127           CT025531.9         144096-144150       c
            1128-1221           CT025531.9         143800-143893       c
            1222-1312           CT025531.9         140969-141059       c
            1313-1431           CT025531.9         140125-140243       c
            1432-1574           CT025531.9         137492-137634       c
            1575-1626           CT025531.9         136815-136866       c
            1627-4308           CT025531.9         132358-135039       c
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 64.14 cM"
     gene            1..4308
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="upstream binding protein 1"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
     exon            1..72
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            73..262
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     CDS             150..1664
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="isoform b is encoded by transcript variant 7;
                     nuclear factor 2d9"
                     /codon_start=1
                     /product="upstream-binding protein 1 isoform b"
                     /protein_id="NP_001359441.1"
                     /db_xref="GeneID:22221"
                     /db_xref="MGI:MGI:104889"
                     /translation="MAWVLSMDEVIESGLVHDFDSSLSGIGQELGAGAYSMSDVLALP
                     IFKQEDSSLSLEDEAKHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKM
                     GDMPELSGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDT
                     RTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNEN
                     GEYTDHLHSASCQIKVFKPKGADRKQKNDREKMEKRTAHEKEKYQPSYDTTILTECSP
                     WPDTPTAYVNNSPSPAPTFTSSQPSTCSVPDSNSSSPNHQGDGAAQASGEQIQPSATT
                     QETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRP
                     RLTIYVCQEQPSSTALQGQPQAAGSGGESGGGTPSVYHAIYLEEMVASEVARKLASVF
                     NIPFHQINQVYRQGPTGIHILVSDQMVQNFQDETCFLFSTVKAENNDGIHIILK"
     exon            263..414
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            415..491
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            492..597
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            598..704
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            705..857
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            858..968
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1072
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1127
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1221
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1312
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1431
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1574
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1626
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     exon            1627..4308
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3260..3265
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="hexamer: AATAAA"
     polyA_site      3282
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
     regulatory      3456..3461
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="hexamer: AATAAA"
     polyA_site      3483
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="major polyA site"
     regulatory      4287..4292
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
                     /note="hexamer: AATAAA"
     polyA_site      4308
                     /gene="Ubp1"
                     /gene_synonym="Cp2b; LBP-1a; LBP-1b; NF2d9"
ORIGIN      
        1 ggaagcggcg agcgagccca agccggagcc gcatcgaagc tgcgtccggg ccggcggagc
       61 ggcggcggcg gggacgcgcc cgcggagctc gggcgccttc gccccggacc cggaggccgc
      121 gctgcgcggg gcggcggcga ggccggaaga tggcctgggt gctcagtatg gacgaggtga
      181 tcgagtccgg gctggtgcac gacttcgact ccagcctgtc cggcatcggg caggagctgg
      241 gcgccggcgc ctacagcatg agtgatgtgt tggcattgcc cattttcaag caagaagatt
      301 ccagtctttc cttggaagat gaggccaagc accccccctt ccaatatgta atgtgtgctg
      361 caacttcgcc agccgttaag ctgcacgacg agacacttac ttacttgaac caaggccagt
      421 cttatgaaat tcggatgctg gataatcgca aaatgggaga catgcctgag ctcagtggga
      481 agttggtaaa gagcatcata agggtggtgt tccatgacag gcggctacag tacacagaac
      541 atcagcagct tgaaggctgg aagtggaatc gtccaggaga caggcttctc gatttagata
      601 ttccaatgtc tgtgggaata attgacacaa ggacaaatcc aagccagtta aatgcagttg
      661 aatttctgtg ggaccctgca aagcgcacat ctgccttcat tcaggtacat tgtatcagca
      721 cagaattcac cccgcgtaag catggaggtg aaaaaggagt gcctttcagg atccaggttg
      781 acacctttaa gcagaatgaa aacggggaat acacagatca tcttcactca gccagctgcc
      841 aaatcaaagt ctttaagcct aaaggtgcag acagaaaaca aaaaaatgac cgagaaaaga
      901 tggagaagag aacagctcat gaaaaagaaa agtaccagcc atcttacgac accaccattc
      961 tcacagagtg ttctccatgg cccgacaccc ctacagccta tgtgaacaac agcccttccc
     1021 cagcgcccac tttcacctcc tcacaaccga gcacgtgcag tgtcccagac agcaattctt
     1081 catccccaaa tcaccaggga gatggagctg cacaagcgtc tggggaacaa attcagcctt
     1141 cagctacaac ccaggaaaca cagcagtggc tgctcaaaaa caggttctct tcctacacaa
     1201 gactgttctc taatttttca ggtgccgact tattaaagct gacaaaggag gatttagttc
     1261 agatttgtgg tgcagccgat ggaattcggc tctataattc cctgaagtca aggtcggtta
     1321 ggccccgctt aaccatctat gtctgccagg agcagccgag tagcaccgcg ctgcaagggc
     1381 agccacaagc tgcaggcagt ggaggtgaaa gtggcggtgg gacgccctcc gtttatcatg
     1441 caatctactt ggaagaaatg gttgcctcag aagttgctcg aaaacttgcc tccgtgttta
     1501 atattccttt ccaccaaatt aaccaggttt acagacaggg ccccactggt atccacattc
     1561 ttgttagtga ccagatggtt cagaactttc aagatgaaac ttgtttttta ttctccacag
     1621 taaaagctga aaataatgat ggtattcaca taattttgaa gtgatacctt aaacggactg
     1681 aactctatcc agtaccaaat aaagtcatgc ttaaaagtgt gtgaagactg aatccaagaa
     1741 gtcttgggat tggattttac tgtgaaatgt ttcatattga aaacacaaga tgaccttcct
     1801 aaggagctgc aggagaggca aatctcctca gtgtcactgc cacagcccca gcatcctcgt
     1861 gagagagaga gagagagaga gagagcctgt gcgagcgagc gagcatgtca ggtgacattc
     1921 gacccagctt ctaccgtggt gggcacaagt acttgcttcc ctggcaaggg ccagtggaca
     1981 gaacccccca gagcagttgc tgctgctttt cacactgtat gcagtttgaa ttgaatgtaa
     2041 aactcaaccg tgggcattta cctttctgtg ccagtttggc ttttgttgcc tgaaccttat
     2101 gctggcctgg ggaggagata gagttgcctc tgggggagct gctctgtact gggtgacacg
     2161 gccgtatggg tcaggtaaga ggcttagctc cttcctgaag gtggacatca gaggggtcct
     2221 gctagacccg agccgagccg agccgagccg agcagatgag cagactgcac tccctgtcag
     2281 ccattccgtg tgcgaggtca gtgtaagtcc taataggtac cgaggcttgg gcgtttggct
     2341 tgggcttcca gttttagcat tttagtttct ggatttcacc tttgaaacct ccttgccttt
     2401 taaactcatg tggtttcctt ttctcgtctc cccaccccct acttgagcct ccaggtgtgt
     2461 atactccctt gtcttgtgcc tactctgttc ttaaacatgt ctaaagccct tcccagacct
     2521 cagaactaga tgatggggaa acagtatcat gtctctgata ttaaagggat ttttttttta
     2581 atgagacaaa attaccctgg aaacactaga tgtcataaca agacactaaa atgtatcata
     2641 aaccttcccc ccgcccaaat accgagtttc agtacaatca tggctagatg gtggctggtg
     2701 ggggctctgt actctgcatc gttcatgctt tgtctgtagc aggtgtgcct gtgagtcacg
     2761 cgtgcacacg gccatcacct ctcctctctc tcacgacctc tcgtgaggcc tgtggcatat
     2821 ccgagttttt aaaaacttct ttccatttta attctgtagc atctttgccc atttgcttag
     2881 ctgctggctg tgaatgcgct tgtctgaccc ttgttgttca ggtgggtagg aataattaca
     2941 ttttaaatga aatctcttcc agaagacaga ctacttcaat gggtaaaggc tttaacagct
     3001 tgttttattc atactgggga ttaattactt gccacaaaac aaactgtctc gataattttc
     3061 ctcttgggtt tggcagtgct gtagccttgc aggcccttta ggagggagcg ctcccatccg
     3121 tccttccctt tgctttgtgt gaccacatgc tttctgtacc attcacttac ttgggaaaga
     3181 agtggactta tctcctaatt gttttagaat tttgcttgtc tatttagctt tcctttttgg
     3241 atctcatgat ttatggaaca ataaatgtca tttaatgctg tgtattattt tgaattcatt
     3301 atcaggtttt agaagtgggg tgaaagtact tacaggctcc tcagacttga acttgtgctg
     3361 agcagcacaa agtgctaggc cgtctcagtg aaactatacc tggcccatgg caccagcagt
     3421 ctgctacttt ggttatagga tgtacagttc agtgtaataa atgttttctg attgttttgt
     3481 aaacgtgtca ctcatttcaa atctaagctg cactgttgtc atctgaagtc acatggactc
     3541 aagggttggc ctcgatgtgc atggtgtaag atgttcatcc caatttccac agaggtgatg
     3601 caactcaaga caagtagtta cagtaagtgc ctgctgcata cttagaagag acagatcagg
     3661 ctcgaagtca tggtcactga gcatcaagtc caccatctgc aatgagccac atcattctag
     3721 ctcagaaaaa attccatagt tgtctcgggt atttcataga agtgagtctc acgagtcact
     3781 ggagcaggtc tagtgcttac ttagcagctc ctccagcagc catgccccac cccccacccc
     3841 ccacacagcg ccacagttaa gtagctgttg tggtagtcgt acccttcgta tcacagtact
     3901 ccttacaagg agccgttcgc ctgatgagtc tctggaatgt gtgtgtatct gctttccctc
     3961 ccagagtgca tcggagacac tgcatctatg cagatgcttc agtgctgtcc accgaggcag
     4021 aaaaagctct ttcttgcagt tgtggttggg gtggttgctg gaaggttcag ctaccattat
     4081 taatattgaa ggtgggaggt ctcagtggca cagagcagca gcaccgtaat agtaaaagac
     4141 agcatcctgg gacagggaca ggagtgcctg catttgcaaa aatctgactc cagtgagcaa
     4201 ggtgaggtgt tgtgagtctg aagctgcaaa tacgtcattc atttgacaag ctttaaaaca
     4261 gttatgattt ctaaaaattc agagtaaata aaaaccacat ccattcta
//
