LOCUS       NM_001413517            1482 bp    mRNA    linear   ROD 26-JUN-2024
DEFINITION  Mus musculus ubiquitin-like 7 (bone marrow stromal cell-derived)
            (Ubl7), transcript variant 19, mRNA.
ACCESSION   NM_001413517
VERSION     NM_001413517.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1482)
  AUTHORS   Jiang,W., Li,X., Xu,H., Gu,X., Li,S., Zhu,L., Lu,J., Duan,X., Li,W.
            and Fang,M.
  TITLE     UBL7 enhances antiviral innate immunity by promoting Lys27-linked
            polyubiquitination of MAVS
  JOURNAL   Cell Rep 42 (3), 112272 (2023)
   PUBMED   36943869
REFERENCE   3  (bases 1 to 1482)
  AUTHORS   Sabik,O.L., Medrano,J.F. and Farber,C.R.
  TITLE     Genetic Dissection of a QTL Affecting Bone Geometry
  JOURNAL   G3 (Bethesda) 7 (3), 865-870 (2017)
   PUBMED   28082324
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122534.5 and AC165246.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17253012.2952883.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                AC122534.5         155394-155404
            12-224              AC122534.5         157035-157247
            225-344             AC122534.5         158951-159070
            345-427             AC122534.5         163706-163788
            428-512             AC122534.5         164436-164520
            513-562             AC122534.5         166373-166422
            563-730             AC122534.5         166848-167015
            731-853             AC122534.5         167552-167674
            854-1215            AC122534.5         174110-174471
            1216-1482           AC165246.2         79110-79376         c
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 31.63 cM"
     gene            1..1482
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="ubiquitin-like 7 (bone marrow stromal
                     cell-derived)"
                     /db_xref="GeneID:69459"
                     /db_xref="MGI:MGI:1916709"
     exon            1..11
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            12..224
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             41..991
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="isoform 6 is encoded by transcript variant 19;
                     ubiquitin-like protein 7"
                     /codon_start=1
                     /product="ubiquitin-like protein 7 isoform 6"
                     /protein_id="NP_001400446.1"
                     /db_xref="GeneID:69459"
                     /db_xref="MGI:MGI:1916709"
                     /translation="MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLK
                     QLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPE
                     PVDKVAALREFRVLHTALHSSSSYREAVFKMLSNKESLDQIIVATPGLSSDPIALGGF
                     LFDGLSDDEDDFHPSTRSTPSSSTPSSRPASLGYSGAAGPRPITQSELATALALASTP
                     ESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQPSLQIQWQP
                     QLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGAP"
     exon            225..344
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            345..427
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            428..512
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            513..562
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            563..730
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            731..853
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1482
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1088..1093
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="hexamer: AATATA"
     polyA_site      1109
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="major polyA site"
     regulatory      1454..1459
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="hexamer: AATATA"
     polyA_site      1482
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
ORIGIN      
        1 agaggaccag aggagaaaga gagagcgcga aagagagagg atgtctctct cagactggca
       61 tctggcagtg aagctggctg accagccact tgctccaaaa tctattcttc agttgccaga
      121 gacagaactg ggagaatatt ccctaggggg ctatagcatt tcatttctga agcagcttat
      181 tgctggcaag ctccaggaat ctgttccaga cccggagctg atcgatttga tctactgtgg
      241 ccggaagcta aaagatgacc agacccttga cttctatggt attcagcctg gatccacagt
      301 ccatgttctc cgaaaatctt ggcctgagcc tgatcagaaa cctgaacctg tggacaaagt
      361 agctgccctg agagagttcc gggtcctgca cactgccctg cacagcagct cttcctacag
      421 agaggcggtc tttaagatgc tcagcaataa agaatctctg gatcagatca ttgtggccac
      481 cccaggcctc agcagtgacc ccattgctct aggtggcttc ctgtttgacg ggctctcaga
      541 tgacgaggac gactttcacc caagcactcg gtctacgccc tctagcagta cacctagctc
      601 ccgccccgcc tccctgggat acagtggagc tgcagggccc cgccccatca cccagagtga
      661 gctggccact gccctggccc tggccagtac tccagagagc agttctcata caccaactcc
      721 tggcacccag ggccattctt caggcacctc gccaatgtcc tctggtgtcc agtcagggac
      781 acccatcacc aacgatcttt ttagccaagc tctccagcat gccctgcagg cctctgggca
      841 gcccagcctt cagatccagt ggcagcctca gctgcagcag ttgcgtgaca tgggcatcca
      901 ggatgacgaa ctaagcctcc gggccctaca ggccactgga ggtgatatcc aagcagccct
      961 ggaactcatc tttgctggag gagccccatg aacttcttgt acctgaacac ctagcaaatt
     1021 gcagaggctg ttcctggcaa gaagcacttg tgaagttgct tctagattcc ccacccaacc
     1081 ccaccccaat atatcatatg ctccccttgc ctgccgtgtc cagtgcttgg ccttcttatt
     1141 gacctcaact ggtgggagca gcttggcaag caagatgcat ggttgtggtg ctgtggttca
     1201 gggttcaggt tgatccttac gtggtttaga tcctgggcca atgtcatggg ggatgctgtg
     1261 taatacccat attcatctta gacaagtccc tagcaatagc ccccatctat tttggtgctt
     1321 tagagcctga ggctgaagtg agctacaacc cagtcttcag ggtagttgct gagttacaga
     1381 gacggccaga agagactatg acctctgatg aaagtctggg gagtgaccag gtgaattctg
     1441 gatgtggcat gagaatatat cagctgattc catgtcccta ca
//
