LOCUS       NM_001413506            2065 bp    mRNA    linear   ROD 26-JUN-2024
DEFINITION  Mus musculus ubiquitin-like 7 (bone marrow stromal cell-derived)
            (Ubl7), transcript variant 8, mRNA.
ACCESSION   NM_001413506 XM_030244565
VERSION     NM_001413506.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Jiang,W., Li,X., Xu,H., Gu,X., Li,S., Zhu,L., Lu,J., Duan,X., Li,W.
            and Fang,M.
  TITLE     UBL7 enhances antiviral innate immunity by promoting Lys27-linked
            polyubiquitination of MAVS
  JOURNAL   Cell Rep 42 (3), 112272 (2023)
   PUBMED   36943869
REFERENCE   3  (bases 1 to 2065)
  AUTHORS   Sabik,O.L., Medrano,J.F. and Farber,C.R.
  TITLE     Genetic Dissection of a QTL Affecting Bone Geometry
  JOURNAL   G3 (Bethesda) 7 (3), 865-870 (2017)
   PUBMED   28082324
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122534.5 and AC165246.2.
            
            On Nov 3, 2022 this sequence version replaced XM_030244565.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422600.475851.1,
                                           SRR5189685.165154.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-286               AC122534.5         155394-155679
            287-402             AC122534.5         156107-156222
            403-615             AC122534.5         157035-157247
            616-735             AC122534.5         158951-159070
            736-818             AC122534.5         163706-163788
            819-903             AC122534.5         164436-164520
            904-961             AC122534.5         164901-164958
            962-1095            AC122534.5         166024-166157
            1096-1145           AC122534.5         166373-166422
            1146-1313           AC122534.5         166848-167015
            1314-1436           AC122534.5         167552-167674
            1437-1798           AC122534.5         174110-174471
            1799-2065           AC165246.2         79110-79376         c
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 31.63 cM"
     gene            1..2065
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="ubiquitin-like 7 (bone marrow stromal
                     cell-derived)"
                     /db_xref="GeneID:69459"
                     /db_xref="MGI:MGI:1916709"
     exon            1..286
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            287..402
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            403..615
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             432..1574
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="isoform 1 is encoded by transcript variant 8;
                     ubiquitin-like protein 7"
                     /codon_start=1
                     /product="ubiquitin-like protein 7 isoform 1"
                     /protein_id="NP_001400435.1"
                     /db_xref="GeneID:69459"
                     /db_xref="MGI:MGI:1916709"
                     /translation="MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLK
                     QLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPE
                     PVDKVAALREFRVLHTALHSSSSYREAVFKMLSNKESLDQIIVATPGLSSDPIALGVL
                     QDKDLFSVFADPNMLDTLVPAHPALVNAIILVLHSVAGSTPMPGADSSSRSMPSSSYR
                     DMPGGFLFDGLSDDEDDFHPSTRSTPSSSTPSSRPASLGYSGAAGPRPITQSELATAL
                     ALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQPSL
                     QIQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGAP"
     exon            616..735
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            736..818
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            819..903
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            904..961
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1095
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1145
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1313
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1314..1436
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1437..2065
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1671..1676
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="hexamer: AATATA"
     polyA_site      1692
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="major polyA site"
     regulatory      2037..2042
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
                     /note="hexamer: AATATA"
     polyA_site      2065
                     /gene="Ubl7"
                     /gene_synonym="2300004C15Rik"
ORIGIN      
        1 agaggaccag agtgagtgtt tacaccggcg gctcgctgcg gccgggttcc ttccgcggga
       61 cgggtgaggg cgctgggccc cctccctggg cgcgcggggc tctcgtgggt ccggagtagc
      121 taactggtcc cacgagagag gtggggttgt caacattgtc cctactcacg actaggtatc
      181 tgtgaccttg ggccaagaga cttcagcttt ctgagtcttt attcctgatc tgtaaaataa
      241 ggacaatgat gccagtttca ggagacagtt gtgaggattg aaatcgggaa cagggaatgt
      301 gtgaccaaga agagagcatg gaaccgatgt gtttgtgtgg gtcttggtag gagtttgcta
      361 agaggccaaa aagggaagag aacttatatg caaagacagg agggagaaag agagagcgcg
      421 aaagagagag gatgtctctc tcagactggc atctggcagt gaagctggct gaccagccac
      481 ttgctccaaa atctattctt cagttgccag agacagaact gggagaatat tccctagggg
      541 gctatagcat ttcatttctg aagcagctta ttgctggcaa gctccaggaa tctgttccag
      601 acccggagct gatcgatttg atctactgtg gccggaagct aaaagatgac cagacccttg
      661 acttctatgg tattcagcct ggatccacag tccatgttct ccgaaaatct tggcctgagc
      721 ctgatcagaa acctgaacct gtggacaaag tagctgccct gagagagttc cgggtcctgc
      781 acactgccct gcacagcagc tcttcctaca gagaggcggt ctttaagatg ctcagcaata
      841 aagaatctct ggatcagatc attgtggcca ccccaggcct cagcagtgac cccattgctc
      901 taggggttct ccaggataag gacctcttct ctgtctttgc tgatcccaac atgctagata
      961 cattggtgcc tgcccaccca gccctagtca atgccatcat cctggttctg cactctgtag
     1021 caggcagcac cccaatgcca ggagctgact cctcttcccg aagcatgccc tccagctctt
     1081 accgagatat gccaggtggc ttcctgtttg acgggctctc agatgacgag gacgactttc
     1141 acccaagcac tcggtctacg ccctctagca gtacacctag ctcccgcccc gcctccctgg
     1201 gatacagtgg agctgcaggg ccccgcccca tcacccagag tgagctggcc actgccctgg
     1261 ccctggccag tactccagag agcagttctc atacaccaac tcctggcacc cagggccatt
     1321 cttcaggcac ctcgccaatg tcctctggtg tccagtcagg gacacccatc accaacgatc
     1381 tttttagcca agctctccag catgccctgc aggcctctgg gcagcccagc cttcagatcc
     1441 agtggcagcc tcagctgcag cagttgcgtg acatgggcat ccaggatgac gaactaagcc
     1501 tccgggccct acaggccact ggaggtgata tccaagcagc cctggaactc atctttgctg
     1561 gaggagcccc atgaacttct tgtacctgaa cacctagcaa attgcagagg ctgttcctgg
     1621 caagaagcac ttgtgaagtt gcttctagat tccccaccca accccacccc aatatatcat
     1681 atgctcccct tgcctgccgt gtccagtgct tggccttctt attgacctca actggtggga
     1741 gcagcttggc aagcaagatg catggttgtg gtgctgtggt tcagggttca ggttgatcct
     1801 tacgtggttt agatcctggg ccaatgtcat gggggatgct gtgtaatacc catattcatc
     1861 ttagacaagt ccctagcaat agcccccatc tattttggtg ctttagagcc tgaggctgaa
     1921 gtgagctaca acccagtctt cagggtagtt gctgagttac agagacggcc agaagagact
     1981 atgacctctg atgaaagtct ggggagtgac caggtgaatt ctggatgtgg catgagaata
     2041 tatcagctga ttccatgtcc ctaca
//
