LOCUS       NM_138589               4831 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ubiquitin family domain containing 1 (Ubfd1), mRNA.
ACCESSION   NM_138589
VERSION     NM_138589.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4831)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK077395.1 and
            AC124379.3.
            
            On Oct 20, 2005 this sequence version replaced NM_138589.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7974084.7352.1,
                                           SRR1660815.13449.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1474              AK077395.1         24-1497
            1475-4831           AC124379.3         67483-70839         c
FEATURES             Location/Qualifiers
     source          1..4831
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 65.35 cM"
     gene            1..4831
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /note="ubiquitin family domain containing 1"
                     /db_xref="GeneID:28018"
                     /db_xref="MGI:MGI:107301"
     exon            1..287
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1192
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /note="ubiquitin-binding protein homolog"
                     /codon_start=1
                     /product="ubiquitin domain-containing protein UBFD1"
                     /protein_id="NP_613055.2"
                     /db_xref="CCDS:CCDS21808.1"
                     /db_xref="GeneID:28018"
                     /db_xref="MGI:MGI:107301"
                     /translation="MLKRGRGRPGKRRRRVSIETSTCFRPACVKLGAGAGANLRQLAS
                     SRRPLRSWWVLYTIIMAAAGAPDGMEEPGMDTEAEAVATEAPARPLNCVEAEAAVGAA
                     AEDSCDARGNLQPAPAQPPGDPAAQASVSNGEDAGGGVGKELVDLKIIWNKTKHDVKV
                     PLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTIND
                     VLAVNTPKDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVP
                     LSGMYNKSGGKVRLTFKLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAF
                     QLGPTEASYYWVYWVPTQYVDAIKDTVLGKWQYF"
     exon            288..617
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            618..826
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            827..892
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            893..998
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1081
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..4831
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4808..4813
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /note="hexamer: ATTAAA"
     polyA_site      4826
                     /gene="Ubfd1"
                     /gene_synonym="D7Wsu105e; D7Wsu128e; Ubph"
                     /note="major polyA site"
ORIGIN      
        1 ggactagggc ggcgatgcgc cgccgctcgg ggaccgagcg ctgcgagcag gcgatctccc
       61 agacccgccc cctccggctg cgggaatgct aaagcgtggc aggggccggc ccgggaagcg
      121 gaggaggcgg gtctccatag aaacctccac ctgtttccgg ccagcctgtg tgaaattagg
      181 ggctggtgcg ggggccaatc tccgccagct cgcttcttcc cggcggcccc tgcggtcgtg
      241 gtgggtgttg tacacaatca tcatggcggc ggccggagcc ccggatggca tggaggagcc
      301 aggcatggac acggaggccg aggctgtggc caccgaggcg cccgcacggc ccctcaactg
      361 cgtggaggcc gaagcagccg taggggcagc ggcggaggac tcctgcgacg cgcgaggcaa
      421 cctgcagccg gccccggccc agccccctgg ggaccctgcg gcccaggcct cggtcagcaa
      481 cggcgaggac gcgggcggcg gtgtgggcaa ggagctggtg gatctgaaga taatctggaa
      541 caagaccaaa cacgacgtga aggtccctct ggacagcacg gggtccgagc taaagcagaa
      601 gattcactcc attacaggtc tcccacctgc catgcagaag gtcatgtata aaggacttgt
      661 tcctgaagac aagactttga gagaaataaa agtgaccagt ggggccaaga tcatggtggt
      721 tggttctact ataaatgatg ttttagcagt aaacaccccg aaagatgctg cccagcagga
      781 tgcaaaggct gaagaaaaca agaaggagcc cctctgcagg cagaagcaac acaggaaagt
      841 gttggacaag ggaaagcctg aagatgtgat gccgtctgtt aagggtgccc aggagcgcct
      901 gccaacggta cccttgtctg gcatgtacaa taagtctggc gggaaagtga ggctcacctt
      961 taagctagag caagaccagc tgtggatcgg cactaaagag cggactgaga aactgcccat
     1021 gggctccatt aaaaatgtgg tcagtgaacc tattgaagga catgaagact accacatgat
     1081 ggcgtttcag ttgggcccca cggaagcctc ttactactgg gtgtactggg ttccaactca
     1141 atatgtggat gcaatcaaag acactgtgct gggcaagtgg cagtattttt gaaagcactt
     1201 tcacctctgg cccaggagac tgacccaaag tgaaggacat tgccgggaga ggtccgcagc
     1261 atccctggat tgcagagttc tgggactttg ttcacacaca cacaaatctc tattcaatct
     1321 gaggtgatgt ggtgactgaa gccagaggtg atgtactttc accattagct taatttgaac
     1381 ttaaaatcac cggttccctt tcttgcagtc agcttcatac catttttaaa gtcagtatgg
     1441 tggaaattaa taaatccaag tttggaacat gtgtggaata ctcttatact cttaagtctg
     1501 tttgagagta gacctaccag caatgctgag acggaatcat caaaagcttt ctggttgttt
     1561 ccttctttgc ttattttctt tcttttttcc tttctttctt tttttttttt tcttttcctt
     1621 tctttttttt acttttattt ttcctagaag tgacttcaac tgaaatattg atgtctttgg
     1681 ttgcaaacat ttggactgca ttgtgatgag tctggttggt tttgttttgt ttttgttttt
     1741 ttctttggta ttaaaattgt atgcaaaatg ggggtggtga gtaagccata tatttttgtg
     1801 tgtgtgctca ttgattcaga tagttttgtt ttgttttttt attatttccc tatgatttcg
     1861 ttttaatccc aaagatgcca gtttctcttt tggtacctca ttttcacctc tttgccaggc
     1921 tctcttccat gtgctgctgc ttgggaatgg acatgggaag taacagctgt ggtcttggtg
     1981 taggggttcc cacctcactg tggtggtctt cgaacagtag agtatctctc acttgattcc
     2041 tgtgtaccct ttggatccct gttctgaggc gttccactgc tggtttgctt gttgacagcc
     2101 ttcctttagc ttgactttaa agccctgcct atcaccacag cctaggattt gctgctccaa
     2161 ggccccctgc tctgaggagc cggcttgcca tatagccaca cgtcatacac tttatttttt
     2221 gggaagcttc ccagaactcc ttaagcagtc caatggttgt ttgaattatg cttctccatt
     2281 cggtccttct gctcatgcgt tcagttcaag tgtcctttat cccaggttca gagatgctgc
     2341 ctttctcatg gaagacgtct gacccagtgg gtcagcaagt ggtattccaa caacagaatg
     2401 ggataagttg ctttcaggac cagcttgctc tcctggtttt agccctgacc ttctgtgtac
     2461 atgtgaactg ctgtcttttc tgtaagcctt gattgactga aaggagggac agtctcttgg
     2521 tggatgatcc ttgtgctgtt tgctgtttct ctgctgctgt ctttgcaatt ctcctctcac
     2581 tggtcgcagg ctctcatagt aaggtttggt gagaaacctc ccagcgtcac actttggact
     2641 cttaagctgt tacccgccct catcctgtga aatgtattcg catgtattgc ctaagatgac
     2701 tattccttgt gagccaatta atgacaatat ttatgccctt cccttctaag ctgtagtttg
     2761 ggaatccagc ccacatagac agcctcttgc tttttgtggt gtattcagtg ccaagttatg
     2821 catctggaca ggaaaaacta ctctgctttt tgggcgcata agtaacgtgt gaagtacagc
     2881 gtccaagaaa ctgcctgtgt tgcacctcag tgatagttgt ggattttctg ttcttattgg
     2941 cctgcagttc ctggagaagg tgcactttgc tccttgtccc agcctcctcc tgcacttggc
     3001 aggcctatca aggaagtgac caagtggcag gtagagcatc ttcttggctt gaatactgtc
     3061 atttgtttgc caatgtctct gagacctgtc ttgacagtgc cacataccta gttttggtct
     3121 ctgtgatcgg gcctctggtg ttcccacctt ggctctgagg cccatcctgc cagccctgtt
     3181 ttctgtgtgg gtcccagtgc tcttcaccgc ctcctcccag tactcatgcc ctgccattat
     3241 ccccctgctg cccaagggcc aaactgcttc tcacgcaggc cggtgtcatt tcaagaggac
     3301 caaagcctct gtgagccttt ttattttaag taaaatggtg ctttttcctt acttggagat
     3361 attctctata aataatgtaa atgacacctt tcatatggag ccgttttgag tattgctttc
     3421 cagagcttgc tgaatctgct tgagctctgg ctcctgactc tgtcagtatg gaaggctttg
     3481 ccagaagctc ttagaagaca gacagtgcca gaagccctgg gaataagtgt ttagatctgt
     3541 ctgggtcaca gcagtatttg ctattttgtc actcagtccc gtgaacagtc tttatatatt
     3601 tcttaacatg tgggatatac tgactaaatc tgtgtgagca ttggaatact cttcccttta
     3661 ggtagcatcc tagtatgttt tttcctcagg attatttctg tacaattctt tcagtcagat
     3721 gagagggcac gcaggagaag gcttctggtg gtatcacatg aggctgggta agagagtcct
     3781 actcacagca aggctcctct gcttgtcatc atgtagccac tgaaaaggct gttctcccat
     3841 ctgcaagtgg cactggtggc ccttctgtag gctgccatca caggcatcat gccttccttt
     3901 tcctccctga ggtgacttgg cagaaaaatg tgatcacata actgctgctg agcctgggtc
     3961 cctcagctca gagctcttag actctgagtt gcaggactct tggtaagaag tattttaatc
     4021 catgatgggc ctttgcaggt agctttggct cttaaaatga agtttgactg ggctaaggat
     4081 tactttcttt gcatcctgta gacatagtag gggcctgcct ggtaaggtcc tcagtagctc
     4141 cttagttgct gctttccctt atgagggcca aagagatgaa ctttgctaca ttgccaggtc
     4201 tcagaaaagt cgccatatct cacccagaag ggaatttttc ctctttaatg tgcctggagg
     4261 agcattgtga gctattgcag ttggcctgcc cttttctttg ctaggagcca agaagggagg
     4321 gaatagatag atgtatgcca aggttgggct tttcacccat ctgccaactt tctcttgctt
     4381 cttgctacca ttcaggcctg ttcccttgga aaaggatggt ccctctgtct ttaaactttg
     4441 taataaagtt aacttccagt caggatcaga cccgtttcct tcttcatagg cctagaagta
     4501 gacaggagcc tctagtgtgc aaatcagctg gtggcttagc tgccagggtg ggtggctctg
     4561 cttccttggt gtctgagaac cttccttacc tttcctacag acttctgcag aggtatctga
     4621 caatatgtaa gtactatgtt tccttgtggt gtacactctg ttcttgtttg tttttaaatc
     4681 aaaacgcctg tttgggagga gatgaacgta tttagtctat tagatttgcg ctgctggatt
     4741 tttttttttt taaatatgta atcttgacta gctgttgtat tgtttatcct gtaagattag
     4801 tctatcaatt aaagtttgat aattaattgt g
//
