LOCUS       NM_001145162            2711 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ubiquitin-conjugating enzyme E2Q family-like 1
            (Ube2ql1), mRNA.
ACCESSION   NM_001145162 XM_127466 XM_906878
VERSION     NM_001145162.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2711)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2711)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2711)
  AUTHORS   Yorgan,T.A., Peters,S., Amling,M. and Schinke,T.
  TITLE     Osteoblast-specific expression of Panx3 is dispensable for
            postnatal bone remodeling
  JOURNAL   Bone 127, 155-163 (2019)
   PUBMED   31202927
REFERENCE   4  (bases 1 to 2711)
  AUTHORS   Elsen,G.E., Hodge,R.D., Bedogni,F., Daza,R.A., Nelson,B.R.,
            Shiba,N., Reiner,S.L. and Hevner,R.F.
  TITLE     The protomap is propagated to cortical plate neurons through an
            Eomes-dependent intermediate map
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4081-4086 (2013)
   PUBMED   23431145
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122371.4, BC058543.1 and BC049672.1.
            
            On or before Feb 14, 2009 this sequence version replaced
            XM_906878.3, XM_127466.9.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058543.1, ERR3363659.39893.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1084              AC122371.4         87026-88109
            1085-2680           BC058543.1         20-1615
            2681-2711           BC049672.1         573-603
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 35.55 cM"
     gene            1..2711
                     /gene="Ube2ql1"
                     /gene_synonym="3110006E14Rik"
                     /note="ubiquitin-conjugating enzyme E2Q family-like 1"
                     /db_xref="GeneID:76980"
                     /db_xref="MGI:MGI:1924230"
     exon            1..1340
                     /gene="Ube2ql1"
                     /gene_synonym="3110006E14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             558..1472
                     /gene="Ube2ql1"
                     /gene_synonym="3110006E14Rik"
                     /EC_number="2.3.2.23"
                     /note="E2Q-like ubiquitin-conjugating enzyme 1"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2Q-like protein 1"
                     /protein_id="NP_001138634.1"
                     /db_xref="CCDS:CCDS49307.1"
                     /db_xref="GeneID:76980"
                     /db_xref="MGI:MGI:1924230"
                     /translation="MATLLRKIGLIRLHNRDTEDPKHHHNHRGGGGGQQSASLRGKGG
                     GKSSGHKQQQQQQHPGGSGDASPGPGKGKSKRAAELAARDKQPQPAAGAAGAAGAGGP
                     RERAAGARAGPGPAVAAAAAGGSLVPAARQQHCTQVRSRRLMKELQDIARLSDRFISV
                     ELVNENLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPDNFPFSPPFMRVLSPR
                     LENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFS
                     RKEAEATFKSLVKTHEKYGWVTPPVSDG"
     exon            1341..2682
                     /gene="Ube2ql1"
                     /gene_synonym="3110006E14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2660..2665
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ube2ql1"
                     /gene_synonym="3110006E14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2680
                     /gene="Ube2ql1"
                     /gene_synonym="3110006E14Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcgccgggct cggctcagac ggagcagccg cctctgcaat gtcagcagcc gcagcggcgg
       61 cggcaacgag agcggcagtg gcccgggccc cgcggtagcc gccagcgcag cacggcccgg
      121 caggcgcaca gcgcgactcc acggccacct cgctgtctcc ggggcaccgc gggcggttgt
      181 gcgcgccgcg gtgcagctct tagactcggg accagcgggt ctgcggccgc gcacaaagga
      241 ccacggacac ccggcgtccg gggactgcgc ccagggaccg gccaggaaca gcagctgagc
      301 cgcgtctcca cgcctcccct ccctgggcta ccggagccct tgcccgagaa gacccgtcat
      361 atgacagcgg cgacaaggcg gccagcgagc gctggtactg cccgctccgc tgcgccacgg
      421 ccgccggctc ctaaggtggc cctcgccgcg ccccactaag cggtcgtctg cctccccccc
      481 acaagccccg tgcgtcccag ctatccggct cggggaacag gagccccggc aagcccctcg
      541 ccagagccga gcctaagatg gccacgctgc tccgtaaaat cgggctcatt cgcctgcaca
      601 accgggacac cgaggacccc aagcaccacc acaaccaccg tggcggaggc ggcggccagc
      661 agagcgcatc gctgcgcggc aaaggtggtg gtaagagcag cggccacaag cagcagcagc
      721 aacagcagca ccccgggggc tcaggcgacg ccagcccggg gcccggcaag ggcaagagta
      781 agcgcgcggc ggaactggcc gcgcgcgaca agcagccgca gccagccgcg ggggcggcgg
      841 gggcggcggg cgccgggggc ccccgggagc gggcggcggg cgccagggcg gggccgggcc
      901 ccgcggtggc cgcggcggcg gcgggcggca gcctagtgcc cgcggcgcgc cagcagcact
      961 gcacacaggt gcgcagccgg cggctcatga aggagctcca ggacatcgcg cgcctcagcg
     1021 accgcttcat ctcggtggag ctggtaaacg agaacctctt cgactggaac gtgaagctgc
     1081 accaggtgga caaggactcg gtgctgtggc aggacatgaa ggagaccaac acagagttca
     1141 tcctgctcaa cctcaccttc cccgataact tccccttctc gccgcccttc atgcgggtgc
     1201 tcagcccgcg actggagaac ggctacgtgc tggacggagg cgccatctgc atggagctgc
     1261 tcacgccgcg cggctggtcc agcgcctaca cggtggaggc cgtcatgcgc cagtttgctg
     1321 ccagcctggt caagggccag ggacggatct gcagaaaagc tggcaagtca aaaaagtcct
     1381 tcagccgcaa ggaagctgaa gcaaccttta agagtttggt gaagacacat gagaaatacg
     1441 gctgggtcac cccacccgtg tctgatggct gatgcctgca cgctccccag acactctcga
     1501 gccgcccgtc cacactccac cctgccatct cctccaccgc tgtgcatctt ccaccctttt
     1561 ctactccagc cagaactgtg ttctgaatgc aaaggacaca cttaagttat ttatgaactg
     1621 acgtgtttac agagagaaag agcaaactgt ttgggattac atttccataa taaatgaccg
     1681 tctctaagtc actttagaac acatgcgagt tgacgacttt ccccagtcca cctcccctct
     1741 gcccacctgt cgaatctccc ttagcttctt tccacgacag cagccttgag cagcccggag
     1801 ggaactcagt gccccgccca ctccatttcc atatacaaag gggctgttag caagtcaaga
     1861 gagccgcaca tcactgggcc ggccagcccc tgtttgctga gatctctgtt tctctatctg
     1921 gcaggtcgac ataacttgaa gatgtatctt tctttctgtg gcctgtggtc ttctgtgatg
     1981 acatttagac ctcattcatg ctatgacctt tggctcataa gaacacaaat ctaacattgc
     2041 caggttttag tgttgactta aaagtacaac tgcccacttg attaaaatgt gctcccatgc
     2101 ttatcttgtt ctgtgctgct gttcgaagat aaacctgtgc catttgatga gaggcagggg
     2161 atgctgcggc caccaggggg ggttcaggac atgaggtgcc cctccctggg tgctcagatc
     2221 agcagatggc cagagggaca gtctcttcag acattaggga acgctccagc aacagtgctt
     2281 ctgtgtctgt ctcctctcag ccaccagaag aagacaattt cccctttgcc gatgtcgtcg
     2341 gactcacttt gtcttccgtg ctagtgacag gagacaccag aactgccaaa ggacaccagg
     2401 tgacacaagg ggacttgcat gacccggtct gttacttcac ccactagtca cttgtgtgtc
     2461 cctgacttga ggcaagagca ccctaactgt ggtgtgacct cccgttattt aatctcccca
     2521 cactttcatt ttactcttct gttaaatcac ctagaacttt ctaagaagct ccatgaaatg
     2581 aggagataat gtttatgaca acatgcagac agaggtaaaa tgttcattcc aagtggaaaa
     2641 tcttattgga cacattttaa ataaaaccat gcatacctga caaaaaaaaa aaaaaaaaaa
     2701 aaaaaaaaaa a
//
