LOCUS       NM_001373909            3611 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ubiquitin-associated protein 1-like (Ubap1l),
            transcript variant 2, mRNA.
ACCESSION   NM_001373909 XM_006510911
VERSION     NM_001373909.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3611)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114645.9.
            
            On Sep 5, 2019 this sequence version replaced XM_006510911.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219380.6489.1,
                                           SRR1660825.82475.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849387, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                AC114645.9         166547-166605       c
            60-294              AC114645.9         158297-158531       c
            295-882             AC114645.9         155506-156093       c
            883-1092            AC114645.9         153675-153884       c
            1093-1194           AC114645.9         150624-150725       c
            1195-3611           AC114645.9         147419-149835       c
FEATURES             Location/Qualifiers
     source          1..3611
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 35.26 cM"
     gene            1..3611
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /note="ubiquitin-associated protein 1-like"
                     /db_xref="GeneID:208080"
                     /db_xref="MGI:MGI:2685360"
     exon            1..59
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /inference="alignment:Splign:2.1.0"
     exon            60..294
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /inference="alignment:Splign:2.1.0"
     CDS             175..1329
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="ubiquitin-associated protein 1-like isoform 2"
                     /protein_id="NP_001360838.1"
                     /db_xref="GeneID:208080"
                     /db_xref="MGI:MGI:2685360"
                     /translation="MNALDGVPFKVSKGFVMDTEPHPVPELSVPDCRELLLGTMYDFS
                     LEKKALFWVEAAIRGSCSHQCNDLGIASAPPAWFLLASPKYSQVPAPAQIRDPEAGLQ
                     EPPEEEEEEEEEEEEETEEKGDEEDTSSACEEGMDSSSPQPGSPTSHRRCSLDVLRNM
                     RSELADARRRLSESRLTACPRALLHRFRGHRTLSLSTSPAPAPGPAPQLPNVSELPPR
                     PATAGAMPPLRNHKPTVASLSPYTCLPPLRETPQPLVSCRLHPDSAPDLLSALTEEEQ
                     DLIGPVVALGYPLGRAMEALQKTGRQSLSQFLGYLSACDRLLRQGYDEALVDEAMEMF
                     QFSEHQAGEFLRLWKQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ"
     exon            295..882
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1092
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1194
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..3611
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1566..1571
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /note="hexamer: AATAAA"
     regulatory      1580..1585
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /note="hexamer: AACAAA"
     polyA_site      1590
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /note="major polyA site"
     polyA_site      1601
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /note="major polyA site"
     regulatory      3583..3588
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
                     /note="hexamer: AATAAA"
     polyA_site      3611
                     /gene="Ubap1l"
                     /gene_synonym="Gm514"
ORIGIN      
        1 gttgtacgac tcacatcttc atatactgtc gacagagaag ccctcctgcg aaccacaagc
       61 tgtgagggcc accacatagg tgagtgtggc ctgagcccag ttctgaggac tctacagcct
      121 ctccctgctg tctggccact tacttctgag actgtcccac cattctctgg aagaatgaat
      181 gccctcgatg gtgtcccctt caaggtgtcc aagggctttg tgatggacac agagccccac
      241 cccgtgcctg agctcagtgt cccggactgt agagagctcc tgctgggcac aatgtatgac
      301 ttcagcctgg aaaagaaggc tctcttttgg gtggaagcag ccatccgagg atcttgctcc
      361 catcagtgca atgacctggg gattgcatca gcccctccag cctggttctt actggccagt
      421 ccaaaataca gtcaggtgcc tgcacctgct caaatcagag acccagaggc tggactgcaa
      481 gaacctcctg aagaagagga ggaagaggag gaggaggagg aagaagaaac agaagagaag
      541 ggggacgagg aagacacctc ctctgcctgt gaggagggca tggactccag cagccctcag
      601 cccggctccc ctacaagcca tcgtcgctgc tccctggatg tgctgcgaaa catgaggtct
      661 gagctggctg acgccaggcg gcggctctcg gagagtagac taaccgcgtg tcctcgagcc
      721 ctcctgcacc gcttccgcgg ccatcgcaca ctgagcctga gcaccagccc ggctccagcc
      781 cctggcccag caccacagct cccaaatgtc tcggagctgc ctccacgacc cgccaccgcc
      841 ggcgccatgc ctccattgcg gaaccacaag cccacagttg cttccctcag cccatacacc
      901 tgcttaccac ctctgaggga gacaccccag cccctcgtct cctgtagact gcatcctgat
      961 tcagcacccg acctgctgtc tgccctgacc gaagaggagc aagacctcat tgggccagtg
     1021 gtcgccttgg gctatcccct gggaagggcc atggaggcac tgcagaagac agggaggcag
     1081 agcctgagcc agtttctcgg ctacctcagt gcctgcgaca ggctgctgcg gcagggctac
     1141 gacgaggcgc tggtggatga ggccatggag atgtttcagt tctccgagca tcaggcaggg
     1201 gagttcctgc ggctctggaa gcagttcagt gacatgggct tccagcaaga ccggatcaag
     1261 gaggtgctgt tggtccacgg taatcggcgc gaacaggctc tggaggagct ggtggcctgt
     1321 gcccagtgac aagctgggac attgatgcat ggctgacagt gaaggaccag acctgccatc
     1381 catcccaatg gaatcattaa aagataatgc cggtggtggt ggcacacacc tttagtccca
     1441 gcactagggc tgcagaggca ggaggatctc tgagttcaag gccatcctgg tctacacagt
     1501 gagttccagg acagccaggg ttgcatagag aaaccttgct gtaaaaaaac aaaaacagta
     1561 attataataa aataaaataa acaaaaccta gcaagatcaa agccaggtgt agtgacacat
     1621 gcctttaatc ccagcactca ggaggcagag aaagacagat tcttgagttc gagtctagcc
     1681 tggagaacca gtgctgcaca gagaaaactg atttcagaaa acaaaacaac aacattaaca
     1741 acaaagccaa taagactcag aaggcatctc gggctcaccg agaagcacag aggaggccca
     1801 ggcagcagta gatacaaaca gccgcctctc acatttacag gcagcaggtg gagagcatgg
     1861 tggggttggg aaggtcaatg cgacagttgt ctccagccac cgaaagcctg tgtttaagag
     1921 acctccagag actgagagga ccagccggtg gagtggcctg ggactcaggc aagcagaggt
     1981 cagaggccaa agggttagtg ccctgcctct gactgcagtc aacccaacgt tcttgggttc
     2041 actctctctc attctctttg gtctataaat caagctggag cccaggtctg tggaaacctc
     2101 agggagagtg cccttgtgtc acggcttcat tcccctgttc agcgtgaact gggaacctct
     2161 acaagctgaa acagcaagtc tggggcagct acccaggtct cctgaggcct acagagaccc
     2221 tttgtccttt ccactaagtt tcaaagccac tcggcttgac atggcattga gaatgctcct
     2281 tggccctcta cctggctttg agtgagttgg aggcaatgca cagagaagta tttgggaaaa
     2341 tcagctagag agcatgcagg tggctgtgag tctattacca aaaccaaact aacttggaaa
     2401 agagggtaaa attgaagtgt gaacgctgag atgctgtggc ggacctgagg cgtttcctgt
     2461 tctagctaag ttaatctggc tcaggtgcca cttgtattaa ggcccttgaa tgagaggtga
     2521 cccgcaaggc tcttgccact gccatccttc ctgccacaaa ccctttcatt cccatccctg
     2581 ggaaactatt gcttgattat gaatgaaaaa tggttagtct gcaataatcg ttttttagat
     2641 ttttatttgc attcatttaa ataatgattt cctaagttta atttgggttg tttgccaagc
     2701 acggggggga tttaccagta actacatcac tgaagaaaat atctctcctt cagtcatcaa
     2761 ctgcctatag gatctatagt atagctcctc aaggaggggt ggcgcctctt aagccctatc
     2821 cccttcacta attattttta ggaggtggaa aaataaagtt tgaggcttac actctgagat
     2881 cagacggagc tacgagttta gccttatagc taactagctg tgtgatcttt tgaaagttgc
     2941 ttatcttctc tgtgcctcag tttctcattc ataaaataca tgttaaaact tttcaatgac
     3001 gctggttgac tgggatcatg cacgggatgc ttctgtcact cgttgcatct gccaacctgt
     3061 cacatatatc tccttccttg ttctgtagcc accacccttc tctgttcgtt ctccccgtca
     3121 tctaatgaac accagctctt atagtctgct tacatgtacg tcccctcgag ggtcacatgt
     3181 taaagactta gtctccagct gatggtgctg gtggggactg aagtgaggcc aggaagaaaa
     3241 gagccgcacc atgcccttgg gaggaccctg gcctcccttc tcttcgctgc ttcctgatta
     3301 tcataatgtg agtcattttg ctgtctcata gaccacaatg ctttgcctta ccacggcccc
     3361 caaacaacag acctgagcaa ctgtcagctg gaccctctca aactgtgggt cagaaatatc
     3421 cttaggggct ggaaagatgg ttcagcactt aagagcactt actgttcttc caaaggttct
     3481 gagttcaatt cccagcaact acatggtggc tcacaaccat ctgtaatgag atccaatgcc
     3541 ctcttctagt gtgtcggaag acagctacag ggtactcata taaataaaaa aaaaaaatct
     3601 taaaaataaa a
//
