LOCUS       NM_145359               1402 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus UBA-like domain containing 1 (Ubald1), mRNA.
ACCESSION   NM_145359 XM_622593 XM_974374
VERSION     NM_145359.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1402)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC167018.4, BC064081.1 and AI842624.1.
            
            On or before Apr 19, 2009 this sequence version replaced
            XM_622593.3, XM_974374.1, NM_145359.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC064081.1, AK005316.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849379, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-49                AC167018.4         60629-60677
            50-1370             BC064081.1         1-1321
            1371-1402           AI842624.1         1-32                c
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 2.48 cM"
     gene            1..1402
                     /gene="Ubald1"
                     /gene_synonym="1500031H01Rik; Fam100a"
                     /note="UBA-like domain containing 1"
                     /db_xref="GeneID:207740"
                     /db_xref="MGI:MGI:1916255"
     exon            1..235
                     /gene="Ubald1"
                     /gene_synonym="1500031H01Rik; Fam100a"
                     /inference="alignment:Splign:2.1.0"
     CDS             116..646
                     /gene="Ubald1"
                     /gene_synonym="1500031H01Rik; Fam100a"
                     /note="protein FAM100A; family with sequence similarity
                     100, member A"
                     /codon_start=1
                     /product="UBA-like domain-containing protein 1"
                     /protein_id="NP_663334.1"
                     /db_xref="CCDS:CCDS49750.1"
                     /db_xref="GeneID:207740"
                     /db_xref="MGI:MGI:1916255"
                     /translation="MSVNMDELKHQVMINQFVLTAGCAADQAKQLLQAAHWQFETALS
                     TFFQETNIPYSHHHQMMCTPANTPATPPNFPDALTMFSRLKASESFHGGGGSSSPMAT
                     SATSPPPHFPHATGSFATPSWPTAASPPGGPQQHQPQPPLWTPAPPSPTSDWPPLAPQ
                     QATSEPRAHPAMEAER"
     exon            236..295
                     /gene="Ubald1"
                     /gene_synonym="1500031H01Rik; Fam100a"
                     /inference="alignment:Splign:2.1.0"
     exon            296..1386
                     /gene="Ubald1"
                     /gene_synonym="1500031H01Rik; Fam100a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1354..1359
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ubald1"
                     /gene_synonym="1500031H01Rik; Fam100a"
                     /note="hexamer: AACAAA"
     polyA_site      1383
                     /gene="Ubald1"
                     /gene_synonym="1500031H01Rik; Fam100a"
                     /note="major polyA site"
ORIGIN      
        1 ggcgcggtga gtcagagcgc acagtaaata tttgtattag ccggggccgg ctcgctaatg
       61 gtggacgcgt gaggctagcg cgcagggagg ccggagcggg ctgcacggcg gcgccatgtc
      121 cgtgaacatg gacgagctca aacaccaggt catgatcaac cagttcgtgc tgacggcggg
      181 ctgtgcggcc gatcaggcga agcaactgct acaagcggcc cactggcagt tcgagacagc
      241 cctcagcacc tttttccagg agaccaacat cccctacagc caccaccacc agatgatgtg
      301 cactcccgcc aacacccctg ccacgccccc caacttccct gatgccctca ccatgttctc
      361 ccgtctcaag gcctctgaaa gcttccacgg gggtggcggc agcagcagcc caatggccac
      421 gtcggccaca tcacccccac cgcacttccc ccatgccact ggcagctttg caacacccag
      481 ctggccaact gcagcctcac ccccaggagg cccacagcaa caccagccgc agccgcccct
      541 gtggactccg gcaccccctt ccccgacttc agactggcct cccctggctc ctcaacaggc
      601 cacctcagaa ccaagggccc accctgccat ggaggcagag agataaggga ggcccctccc
      661 ccctcccgga ggccagaacc ccgtggggtg ggggagagga tgtttctgtg ggccccttca
      721 cccctcctct gtctgcacct ctaaacccca gagccctgga ggggagagac tggactctag
      781 ccaggcagtc ttgtgccggc acgcacagct gcacgcacgc atgcaagttc acagcgcagg
      841 cacccccagc tcgcctggat ctgactccaa gtggcttggg tgcctggtgg gcagcacctt
      901 ggagaccaag cagccatccc agcgaagact tacctgcctg gccccaccac ctggagtgtt
      961 tcagagaatc acttggtggc agtcacgtgg ctgactcctg tcttgggcca taggcctaga
     1021 tccctaccca tgggaatgca gagccttctc cgcatgtgtg cgtgcagctg tgtcttatgt
     1081 atttatatgt atgtcgctct tcaaaagcaa cctagtttat ggggcagctg gactttgcat
     1141 gttagagtga gccccaagcc ccttggccca ccaccctgtt gtctgaaggg ctctgtctca
     1201 ctccacctcc ttatctgcca gcattgctgt ttcctgcaaa ggattatggg aaactccagg
     1261 actcttctac ccagctcctg cctgcaaagg ttccctgcat gcctcttccc ctgagcccag
     1321 gggtacctgg tccccatttc ctactcctct tttaacaaaa gagaaaagaa ttccaaacca
     1381 ccaccaaaaa aaaaaaaaaa aa
//
