LOCUS       NM_172474               4375 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
            (Tyw3), transcript variant 1, mRNA.
ACCESSION   NM_172474
VERSION     NM_172474.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4375)
  AUTHORS   Zurkirchen,L., Varum,S., Giger,S., Klug,A., Hausel,J., Bossart,R.,
            Zemke,M., Cantu,C., Atak,Z.K., Zamboni,N., Basler,K. and Sommer,L.
  TITLE     Yin Yang 1 sustains biosynthetic demands during brain development
            in a stage-specific manner
  JOURNAL   Nat Commun 10 (1), 2192 (2019)
   PUBMED   31097699
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4375)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   3  (bases 1 to 4375)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164292.4.
            
            On Jan 10, 2022 this sequence version replaced NM_172474.5.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1). Variant 1 has an
            in-frame upstream AUG with a strong Kozak signal but the CDS was
            annotated at the downstream AUG because the uAUG is only four
            nucleotides from the predicted transcription start site.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK030344.1, SRR9219382.134920.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164132 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-217               AC164292.4         1149-1365
            218-298             AC164292.4         3684-3764
            299-397             AC164292.4         4403-4501
            398-469             AC164292.4         7063-7134
            470-603             AC164292.4         10608-10741
            604-4375            AC164292.4         17927-21698
FEATURES             Location/Qualifiers
     source          1..4375
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 79.24 cM"
     gene            1..4375
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /note="tRNA-yW synthesizing protein 3 homolog (S.
                     cerevisiae)"
                     /db_xref="GeneID:209584"
                     /db_xref="MGI:MGI:2445040"
     exon            1..217
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            218..298
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            299..397
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            398..469
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            470..603
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            604..4375
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1025..1030
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1061
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /note="major polyA site"
     regulatory      4351..4356
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4375
                     /gene="Tyw3"
                     /gene_synonym="5230400J09Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcattccaga gcagaaagcc gaccccagct cgctcgctcg ctcatggacc gtagcgcgga
       61 gttcggccgg tggaaggcgc agagtctgag caaggcggac cttagccgca agggcagtgt
      121 ggacgaggac gcggtggagg tggtggagct cctgaactcg cgggaagagt ttttcaccac
      181 cagctcctgc gcagggcgca tcctccttct ggacgggagc acagaaggct ctggagttca
      241 gaagcaacac tgctgctggc tgctggtcac acacaaaccg tgtgcgagag acgatgtgat
      301 ggcagctctg aagggtgcaa ccagcgaagc tgttttgaag tttgaacctt ttatcctcca
      361 tgtgcaatgc cggacactgc aggacgcaca aaccctgcac tcagtggcaa ttgattctgg
      421 cttcaggaac tctggcatca ccgtgggaaa gcgagggaag accatgctgg ctgtccgggg
      481 tacacatgga ttggaagtcc cattaaccca caagggaaag ctgatggtga cagaggaata
      541 tattgagttc ctgttaacta tagcaaatca gaaaatggag gaaaacaaga gaagaattgg
      601 gaggttttat aactacctac aacatgctct caaacgagaa accatttcaa actcacattc
      661 caagatcaaa gagagaaata acccactttg tactcataag aataggcgga gccaaggaaa
      721 agcgcagggc ccatcgacca ctgaagacaa cgggagggag ctggaagacg gtgatggcct
      781 ggaaatcagt gctgcactct tcctgggaga cgactgaggc ctggcacagt gtcgtctctg
      841 gtgcacggta taaggctgct ctttacaaga gtatcaaggc ttgctgaggg catcaaccct
      901 acaggaggca agagttaatt tctctgtttt agagaaactt aagtgtaaat ggcttttcaa
      961 agtagctttg tgtatgtttg ctctctgaag actgcttttt aagcacatta ggagtcactc
     1021 tacaaataaa cgtaaagctt cctgtgtcta tttatgtcaa ataggaaaag caaggttact
     1081 tcttctctga ggtggcctca gcatcatgag catgcgagtt ggagccatgg gaacaacctc
     1141 actccaaccc tgagcctttc ttacagggca gctcagaatt tgcatttctt gccctggaca
     1201 agtgtctcct cttgctttgg ccgtgtggat aaaagtaact gatatacacg tgagtatttt
     1261 gttcagggaa atacctgtgc cttctgtcta ctttgtctct caccaccaga gcttgctgct
     1321 agcagccgct gagacacatg ggggtagctt tttctaagct tgcttaggaa tgatcaccaa
     1381 gacacagaca tccgcataaa acagaacaca tgtgccatga cagcttgaag ggttaggact
     1441 tgagttctga catcagaggt cctgtagcaa accatttcat tttgtgggtt tccatttctt
     1501 ctaacacctg ctgtgttcgc acttgaggga tgactggatc agataggaag tgagcattgg
     1561 ccagcaatag tctattgcag cattaccatt tttcctcatt gaagggaagg tgacttcatc
     1621 gttttcaaat gtaccagtca tgaagatggc attgacagca tcagggagca tcatgggagc
     1681 agaggccgtc tctagctttg gcagcaggag cttgaggcaa cttgtcacat tgcatccgta
     1741 gtcagggagc ccaggggatg gtgccgccca catcaggatg gatcttcttg attaaaactc
     1801 ataaaacaga cagcagaggt atgtctcctg ggtgattccg aatctcatca aatcgagtaa
     1861 attaactgtc acaagttcaa cctttgtcag tcagatgtcc agacacatta cttcttaaac
     1921 ttttattagg atgtatttta ttagctctgg ttatacatct atgtgtttga gtgtggatat
     1981 gaacacatgt gaacagttgc ccatacaggt cagaagtttg agaagccctg gagcagacaa
     2041 gtgtgatctg cttagcacaa gcacatctcc tgagtcaggc gatttcaaat gccggcaagc
     2101 tggaaaggaa ggttaactgt aactgtcatc tttatttttc ttaaatctgt aagtaaagtc
     2161 agtcaagtcg gcattttagg aacccttcct gaccggctta ttccagacag cacgagaaga
     2221 agccccatga gcggaggctg gagcagacaa gtgtgatctg cttagcacaa gcacatctcc
     2281 tgagtcaggt gatttcaaat actggcaatt tcaagtcggc attttaggaa cccttcctga
     2341 ccggcttatt ccagacagca cgagaagaag ccccatgagc ggaggctgga gcagacaagt
     2401 gtgatctgct tagcacaagc acatctcctg agtcaggtga tttcaaatac tggcaatttc
     2461 aagtcggcat tttaggaacc cttcctgacc ggcttattcc agacagcacg agaagaagcc
     2521 ccatgagcgg aggctggagc agacaagtgt gatctgctta gcacaagcac atctcctgag
     2581 tcaggtgatt tcaaatactg gcaatttcaa gtcggcattt taggaaccct tcctgaccgg
     2641 cttattccag acagcacgag aagaagcccc atgagcggag gctggagcac acctgccctg
     2701 taggtttctg tggattcctt agatgagcaa gcacctgtga tactgtctat gctcaggaca
     2761 atgctgtgtt tgcactctgg tgaagggcgt ggcaggaagc cctggtgctg tgtggcgtgt
     2821 gccttgcaca acttgcactc ttgtaactgc agctgcacgt tacgtataag catatacagc
     2881 ttgctgccag gtagggaact ggggtaggga aaggaaactt acagtcttag aatgtcttga
     2941 gcatggcttc tgaattactg aataaaatct aaatgatctg ccaggtaagc agtcagaagg
     3001 agtgacaaca tgtaaacaga acagccagca tggtggtagt ggtggtggtg gggggaccct
     3061 aggtagaacc accacaggga agggacctga gctgcagtga ccaccctggg ttttagcctc
     3121 tgaactagaa ggcattctct gcttctccct ggggcaacca ttcactgccc aggtttgact
     3181 cctccaggtt ccacaagctt tgtttctgga gttcttggac cagacatcaa ccaagttatg
     3241 gccaagcaga tacgtttcat gtggctcaca tgagggtggt tttcctaatt gggtcatgat
     3301 tttaaagtac aattagctca cagtgggagt aaaactgcat ctctagggtt tgttttgttt
     3361 gttcccttta attggaaaac ttgggttgtt ggaggcacac atcccacatg acactcagcc
     3421 agccacattc tggctgtaac atttgaaaag agtcatccag ttcccctcag acccttccca
     3481 ttgctagctc tctgacagac acctcattag ttggtcccta tgggtgtcag tctgtggtgg
     3541 caagccccgg ataaacactg gagagaaaca aacctgttaa ctgtattagt gtatcgtagg
     3601 acaaaaagat aaactgctac aattcctacg gatgcaagat caaaatgcca agccctttgt
     3661 ataacgatgt ttaggaattt gaagatagct accaccaaga atgaaatcaa ggttgagact
     3721 tctctctctc tctctctctc tctctctctc tctctctctc tctctctctc tctctcacac
     3781 acacacacac acacacacac actctctctc cttttgagat ggtatttggt atatttagca
     3841 ttgtctctag ttcatgcagg catgagccac tacatccaat gtatgtgcta agaaccaatc
     3901 aaacccaagg ctttggtata caccaggcaa gcactctacc aacagagcca cctctaacac
     3961 catagagcaa gatactctga gcataggcaa ctgcacagct cacacactca gaaagccaac
     4021 tctacatagt aagtaggtgt gttgagttaa cagagaacag gtgccttgcc cctaacatgg
     4081 caatttagct gtcctgtcct cattaggaaa agagggaggg cactggttcc tggaataaat
     4141 gctggggggc tctgaaaaat gaccactgcc tccctcctgt gatggaggcc agaagtgact
     4201 ttaatcgaat tggagatggg gaaatagatc tgacactgct atgcaaggaa tacaataaaa
     4261 atatattcct accccaccat ggtgctttgc acatgtgggt gggtcctaac agggattcaa
     4321 ataggcacaa atgttaatgt gctaaaaccc aataaagtag tttaatttcc tagaa
//
