LOCUS       NM_009449               1573 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus tubulin, alpha 3B (Tuba3b), mRNA.
ACCESSION   NM_009449
VERSION     NM_009449.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Akter,M.S., Hada,M., Shikata,D., Watanabe,G., Ogura,A. and
            Matoba,S.
  TITLE     CRISPR/Cas9-based genetic screen of SCNT-reprogramming resistant
            genes identifies critical genes for male germ cell development in
            mice
  JOURNAL   Sci Rep 11 (1), 15438 (2021)
   PUBMED   34326397
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Liu,W., Wang,F., Xu,Q., Shi,J., Zhang,X., Lu,X., Zhao,Z.A., Gao,Z.,
            Ma,H., Duan,E., Gao,F., Gao,S., Yi,Z. and Li,L.
  TITLE     BCAS2 is involved in alternative mRNA splicing in spermatogonia and
            the transition to meiosis
  JOURNAL   Nat Commun 8, 14182 (2017)
   PUBMED   28128212
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1573)
  AUTHORS   L'Hote,D., Serres,C., Laissue,P., Oulmouden,A., Rogel-Gaillard,C.,
            Montagutelli,X. and Vaiman,D.
  TITLE     Centimorgan-range one-step mapping of fertility traits using
            interspecific recombinant congenic mice
  JOURNAL   Genetics 176 (3), 1907-1921 (2007)
   PUBMED   17483418
REFERENCE   4  (bases 1 to 1573)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   5  (bases 1 to 1573)
  AUTHORS   Pohlers,M., Truss,M., Frede,U., Scholz,A., Strehle,M., Kuban,R.J.,
            Hoffmann,B., Morkel,M., Birchmeier,C. and Hagemeier,C.
  TITLE     A role for E2F6 in the restriction of male-germ-cell-specific gene
            expression
  JOURNAL   Curr Biol 15 (11), 1051-1057 (2005)
   PUBMED   15936277
REFERENCE   6  (bases 1 to 1573)
  AUTHORS   Blacque,O.E., Perens,E.A., Boroevich,K.A., Inglis,P.N., Li,C.,
            Warner,A., Khattra,J., Holt,R.A., Ou,G., Mah,A.K., McKay,S.J.,
            Huang,P., Swoboda,P., Jones,S.J., Marra,M.A., Baillie,D.L.,
            Moerman,D.G., Shaham,S. and Leroux,M.R.
  TITLE     Functional genomics of the cilium, a sensory organelle
  JOURNAL   Curr Biol 15 (10), 935-941 (2005)
   PUBMED   15916950
REFERENCE   7  (bases 1 to 1573)
  AUTHORS   Wang,P.J., McCarrey,J.R., Yang,F. and Page,D.C.
  TITLE     An abundance of X-linked genes expressed in spermatogonia
  JOURNAL   Nat Genet 27 (4), 422-426 (2001)
   PUBMED   11279525
REFERENCE   8  (bases 1 to 1573)
  AUTHORS   Villasante,A., Wang,D., Dobner,P., Dolph,P., Lewis,S.A. and
            Cowan,N.J.
  TITLE     Six mouse alpha-tubulin mRNAs encode five distinct isotypes:
            testis-specific expression of two sister genes
  JOURNAL   Mol Cell Biol 6 (7), 2409-2419 (1986)
   PUBMED   3785200
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK137160.1, BC050769.1 and BF152752.1.
            
            On Sep 15, 2006 this sequence version replaced NM_009449.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050769.1, M13443.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                CK137160.1         1-76
            77-1559             BC050769.1         1-1483
            1560-1573           BF152752.1         198-211
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 77.62 cM"
     gene            1..1573
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /note="tubulin, alpha 3B"
                     /db_xref="GeneID:22147"
                     /db_xref="MGI:MGI:1095408"
     exon            1..127
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..1477
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /note="tubulin, alpha 7; alpha-tubulin 3/7; tubulin
                     alpha-3/alpha-7 chain; alpha-tubulin isotype M-alpha-3/7"
                     /codon_start=1
                     /product="tubulin alpha-3 chain"
                     /protein_id="NP_033475.1"
                     /db_xref="CCDS:CCDS39707.1"
                     /db_xref="GeneID:22147"
                     /db_xref="MGI:MGI:1095408"
                     /translation="MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGG
                     GDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANN
                     YARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVD
                     YGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD
                     IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
                     SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAT
                     IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLD
                     HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEAEAEEGEEY
                     "
     exon            128..350
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /inference="alignment:Splign:2.1.0"
     exon            351..499
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /inference="alignment:Splign:2.1.0"
     exon            500..1180
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1567
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1529..1534
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /note="hexamer: AATAAA"
     polyA_site      1567
                     /gene="Tuba3b"
                     /gene_synonym="M[a]7; Tuba7"
                     /note="major polyA site"
ORIGIN      
        1 ctaatgagca tccagggaga aagcgttaag tacccggagc atccagcctg gaccgttggg
       61 cgcacgagcg gcggttgagg agcagctctg aggatcggct gaggtgctct gctaggagtt
      121 cagcatgcgt gagtgtatct ctatccacgt ggggcaggca ggtgtccaga ttggcaatgc
      181 ctgctgggag ctgtactgcc ttgaacatgg tattcagcct gacggtcaga tgccaagcga
      241 caaaaccatt ggcggcgggg acgactcatt caacacattc ttcagtgaga ctggagccgg
      301 caagcacgtg cccagggcag tgtttgtgga cctggagccc actgtggtcg atgaagtacg
      361 caccggaacc taccggcagc ttttccaccc agagcagctc atcactggga aggaagatgc
      421 agccaacaat tatgccagag gtcattatac cattggcaag gagattgttg acctggtcct
      481 ggaccggatc cgaaaactgg ccgatctgtg cacgggactg cagggcttcc tcatcttcca
      541 cagctttgga ggtggcacag ggtctgggtt tgcatcgctg ctgatggagc ggctttcagt
      601 ggactatggc aagaagtcca agctggagtt tgccatctac ccagcccccc aggtttctac
      661 agcggtcgtg gagccttaca actccatcct gaccacgcac accaccctgg agcattccga
      721 ctgtgctttc atggtggata acgaagccat ctacgacatc tgccggcgca acctggatat
      781 tgaacgtccc acatacacca acctcaaccg tctgattggg cagattgtgt catccatcac
      841 agcctcccta aggttcgatg gcgccctgaa tgtggactta acagaattcc agaccaacct
      901 ggtgccatac cctcgcatcc acttcccact ggcgacctat gccccagtca tctctgctga
      961 gaaggcatac catgagcagc tgtcagtagc agagatcacc aatgcttgct tcgagccagc
     1021 caatcagatg gtcaagtgtg accctcgcca tggcaaatac atggcctgct gcatgttgta
     1081 ccggggggat gtggttccca aagatgtcaa tgcggctatt gccaccatca agaccaagcg
     1141 caccatccag tttgtagatt ggtgcccgac tggatttaag gtgggtatta actaccagcc
     1201 tcctactgtg gtccctgggg gagacctggc caaggtgcag cgggctgtgt gcatgctgag
     1261 caataccacg gccatcgcag aggcctgggc ccgcctggac cacaaatttg acctcatgta
     1321 cgccaagcgg gcctttgtgc attggtacgt gggagaaggc atggaggaag gggagttctc
     1381 cgaggcccgg gaggacctgg cagcgctgga gaaggactat gaagaggtgg gcgtggattc
     1441 cgtggaagca gaggcagaag aaggggagga gtactgagcg catgggtctg gctggcggcc
     1501 gtccatttac accttcccca ccattggaaa taaaggatat gtttacttat taaagtttct
     1561 aaatggaaaa aaa
//
