LOCUS       XM_036163361            3843 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transcription termination factor, RNA
            polymerase II (Ttf2), transcript variant X3, mRNA.
ACCESSION   XM_036163361
VERSION     XM_036163361.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3843
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..3843
                     /gene="Ttf2"
                     /gene_synonym="4632434F22Rik; 8030447N19"
                     /note="transcription termination factor, RNA polymerase
                     II; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 30 ESTs, 96 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:74044"
                     /db_xref="MGI:MGI:1921294"
     CDS             54..3422
                     /gene="Ttf2"
                     /gene_synonym="4632434F22Rik; 8030447N19"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X3"
                     /protein_id="XP_036019254.1"
                     /db_xref="GeneID:74044"
                     /db_xref="MGI:MGI:1921294"
                     /translation="MDLVKCPEHGDACFLKTGVRDGPNKGKSFYVCRTNTCGFVQATD
                     IPVSHCLLHEEFVVELQGLFLPQDKKEWRLFFRCARTKAEGKQWCGNVPWRQDPNPKE
                     LSVTSKPQQPSESQLHSPSQPRNPFRVLNKNQKTLERKQFVEEGERKTADKKLRENNE
                     QLLDQRKEQKPKSNSRMEKDPSSDLVATRQSGGDREEQEKSKFQPKTKKAEGMASKQG
                     HGEVLQGIPKGPHMSESESRGVPNKPETLREKETQLLVPSVPGQNPESKVQKEGHVSR
                     EPLKNGEAPSAQVTQRGLAQGPLQGPSKTWRPVPEAPAAPELCSGMAHHATSSSEDSE
                     DDGVSSRPGSPLLFDSTVDSQKKGSLQHSDQSVQRQMPAASGVSKKGDSSDPAAQRAN
                     LTTQLKQKKGTLAAVNIQALPDKGEKLLKQIQALEDALSALALSPEQGTKEKCSAQEP
                     EQSNITKAAAAPLHLVPPQPLPRPLIQPASSLGLKAGRQETPEGASQCSGEGWPGTCC
                     MDQVGLQALGHMNQHHLYNVWKITSEAIDELHRSLKSCPGETAVAEDPAGLKVPLLLH
                     QKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWL
                     SKNDSSVFTSSGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKVLSTY
                     DIVITTYSLLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRV
                     QTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEFSLWKSQVDNGSMKG
                     GERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIFLARSR
                     SALQSYLKRQEGRGSHHGRSPDNPFSRVAQEFGSSVSQGCPAADSQRPSTVHVLSQLL
                     RLRQCCCHLSLLKSALDPTELESEGLVLSLEEQLSALTLSKVDVSEPSPTVSLNGTCF
                     KAELFDDTRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYA
                     TIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLE
                     DQACDRIYRVGQKKDVVIHSSLSSSADSCPLHCK"
ORIGIN      
        1 cggggcggag tcaaagacgg aaacccggcg ggccagggct tcctggctgc ggtatggacc
       61 tggttaagtg tccggagcac ggggacgcct gcttcttaaa gaccggcgtc cgcgatggcc
      121 cgaataaggg aaagagcttc tacgtgtgcc ggacgaacac atgcggcttc gtgcaggcca
      181 ccgatattcc tgtttctcac tgtttattgc atgaggagtt tgtggtcgag cttcagggtt
      241 tgtttctacc acaggacaag aaagaatgga ggctgttctt ccgatgtgct agaaccaagg
      301 cggaggggaa gcagtggtgt ggaaacgtcc catggcggca ggatcctaac cctaaagaac
      361 tctctgtaac cagtaagcct cagcagccat ctgagtcaca gcttcactct cccagccagc
      421 cgagaaaccc atttagggtg cttaacaaga atcaaaaaac actcgaacga aaacagtttg
      481 tcgaagaagg tgagagaaag acagctgata agaagctgag agaaaacaat gagcagctct
      541 tggatcaaag gaaagaacag aagcccaaat ctaacagcag gatggagaag gacccctcat
      601 ctgacctggt ggcaactaga cagtctggag gtgacaggga agaacaagag aaatcaaagt
      661 tccagcccaa aactaagaaa gctgaaggaa tggcttccaa gcaaggccat ggagaggtgc
      721 ttcaaggaat acccaagggt cctcacatgt cagagagtga gagtcgaggg gtcccgaaca
      781 agccagagac tctgagagaa aaggaaaccc agcttttggt gccaagtgtt cctggtcaga
      841 acccagaaag caaggtccag aaagagggac acgtcagcag ggagcccctc aagaacgggg
      901 aggcccctag tgcacaggtc acccagaggg ggctcgctca ggggcctctc cagggaccat
      961 ccaagacttg gaggcctgtt cctgaagcac cagcagcacc tgagctttgc tcgggaatgg
     1021 cccaccatgc cacctccagc agtgaggaca gcgaagatga tggtgtttcc agtaggccgg
     1081 ggtccccact tctctttgac tcgactgtgg actcacagaa gaaggggagc cttcagcatt
     1141 ctgaccagag tgtgcagaga cagatgcctg ctgcttcagg tgtttccaag aagggagatt
     1201 cctctgaccc agcagcccag cgtgcaaacc taacaacaca gctgaaacaa aagaagggta
     1261 ccctggctgc agtgaacatc caggctctcc ctgataaggg tgagaagttg cttaagcaaa
     1321 tccaggcttt ggaggacgca ctcagtgctc tggctctctc cccagaacaa ggaactaaag
     1381 agaagtgcag cgctcaggaa ccagagcaga gcaacatcac caaagctgct gctgcccctc
     1441 tccacttggt acctccccag ccccttccca ggcccctcat ccagcctgca agctctctag
     1501 gactaaaggc aggccgccag gaaactcctg agggagccag ccagtgctca ggagaaggct
     1561 ggccgggaac ttgctgtatg gaccaggttg gcctccaagc attaggccat atgaaccaac
     1621 atcatcttta taatgtgtgg aaaatcacga gtgaagccat agatgagctg catcggtcac
     1681 tgaagtcttg tccgggtgaa acagcagtag cagaagaccc agctggcttg aaggtcccct
     1741 tgctactgca ccagaagcag gcattagcct ggttactgtg gagggaaagt cagaagccac
     1801 aaggagggat cctggcggat gatatgggct taggaaagac tctgacaatg attgcactca
     1861 tcctaaccaa gaagaatcag cagaaaagca aggaaaagga gagaagcgag cctgtgacgt
     1921 ggctttccaa gaatgactcc tctgtcttta cttccagtgg aacactgatc gtctgccccg
     1981 cttccctgat ccatcactgg aagaacgaag tagagaaacg tgtaaccagc aacagactca
     2041 gaatctatct ctaccatggg ccaaaccgga gtcggcacgc aaaagtactc tctacgtatg
     2101 acatcgtgat tactacttac agccttctgg ccaaggagat tcctacaacg aagcaagagg
     2161 gagaggtccc aggagcaaac ctcagtgtgg agggtacctc agcacctttg cttcaggtag
     2221 tctgggctcg gatcattttg gatgaagctc ataacgtgaa aaaccctcga gtacagacat
     2281 ccattgctgt gtgtaagctc caagcccagg cccggtgggc tgtcactgga acccccattc
     2341 agaacaacct gttggatatg tattcactga tgaagtttct ccgttgctcc ccatttgatg
     2401 agttcagtct ttggaagagc caggttgaca atggttcaat gaaaggaggg gaacggttaa
     2461 gcattttaac caagagcctt ttgctgagga gaacaaaaga ccagctggat tccactggta
     2521 aacctctggt agcactgcct gcacgtagat gccagctgca ccggttaaag ctttctgagg
     2581 acgagcgggc cgtttatgac atctttcttg caaggtcaag gtcagctctc cagtcctatc
     2641 taaagagaca agaaggtaga ggcagccacc atggaagaag ccctgataat ccattcagta
     2701 gagtggctca ggagtttgga tccagtgtgt cccagggctg ccctgcggca gactcccaaa
     2761 gacccagcac cgtccatgtc ctgtcccagc ttctgcggct tcgccagtgc tgctgccatc
     2821 tttctctgct gaagtcggct ctggacccca cagaactgga gagcgaaggc cttgtcctgt
     2881 ccctggaaga acagctcagt gctctgacct tgtccaaggt cgatgtctca gagccatcac
     2941 ccacggttag ccttaatggc acatgtttca aggcggagct ttttgatgac acacgaagga
     3001 gcaccaaggt gtcttctctg ctggcagaac tggaggcgat ccaaaaaggc ccagggtccc
     3061 aaaagagtgt cattgtctct cagtggacca gcatgctgca ggtagtagca ctgcacctca
     3121 agaagaaccg actgacttac gccaccatcg atggctctgt caaccccaaa cagagaatgg
     3181 acctggtgga ggcatttaac cactcccagg gacctcaggt catgctgatc tccctcttgg
     3241 ctggcggtgt tggacttaac ctgactggag gaaaccacct tttccttctg gacatgcact
     3301 ggaatccctc acttgaagac caagcttgtg accggattta ccgagtagga cagaagaagg
     3361 atgttgtcat acacagctcc ctttccagct ctgctgattc ctgtcctctg cattgcaagt
     3421 agaaggctct cctgagtcat ctgtctgctg ggacatgtca caccttcagc agctcactcc
     3481 tgtagactta ctctcagtgt cttcagcagc tcactcctgt agacttactc tcagggtttt
     3541 ggcatgtcag gacaaccact aaggatctgg ctcacagctc cggaactttg ccaccagcag
     3601 acttgactgg acagcaggct ctttaattaa acataccacg ttctgaagct cggccagttt
     3661 gttcgtgttc tcattcctgg ggggtgtgcc tgttgtatcc tgtctagcaa gccctggtca
     3721 tcctacatgc ctcacattaa ggattaactc tgatggagcc ttccttgact gctctacaca
     3781 gactgccttt tggaccctgg acacactctt gctcagtcac ttcccatagg gcatagtgta
     3841 tgt
//
