LOCUS       XM_036163360            4569 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transcription termination factor, RNA
            polymerase II (Ttf2), transcript variant X2, mRNA.
ACCESSION   XM_036163360
VERSION     XM_036163360.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4569
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4569
                     /gene="Ttf2"
                     /gene_synonym="4632434F22Rik; 8030447N19"
                     /note="transcription termination factor, RNA polymerase
                     II; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 20 ESTs, 321 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:74044"
                     /db_xref="MGI:MGI:1921294"
     CDS             54..3461
                     /gene="Ttf2"
                     /gene_synonym="4632434F22Rik; 8030447N19"
                     /codon_start=1
                     /product="transcription termination factor 2 isoform X2"
                     /protein_id="XP_036019253.1"
                     /db_xref="GeneID:74044"
                     /db_xref="MGI:MGI:1921294"
                     /translation="MDLVKCPEHGDACFLKTGVRDGPNKGKSFYVCRTNTCGFVQATD
                     IPVSHCLLHEEFVVELQGLFLPQDKKEWRLFFRCARTKAEGKQWCGNVPWRQDPNPKE
                     LSVTSKPQQPSESQLHSPSQPRNPFRVLNKNQKTLERKQFVEEGERKTADKKLRENNE
                     QLLDQRKEQKPKSNSRMEKDPSSDLVATRQSGGDREEQEKSKFQPKTKKAEGMASKQG
                     HGEVLQGIPKGPHMSESESRGVPNKPETLREKETQLLVPSVPGQNPESKVQKEGHVSR
                     EPLQGPSKTWRPVPEAPAAPELCSGMAHHATSSSEDSEDDGVSSRPGSPLLFDSTVDS
                     QKKGSLQHSDQSVQRQMPAASGVSKKGDSSDPAAQRANLTTQLKQKKGTLAAVNIQAL
                     PDKGEKLLKQIQALEDALSALALSPEQGTKEKCSAQEPEQSNITKAAAAPLHLVPPQP
                     LPRPLIQPASSLGLKAGRQETPEGASQCSGEGWPGTCCMDQVGLQALGHMNQHHLYNV
                     WKITSEAIDELHRSLKSCPGETAVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGI
                     LADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWLSKNDSSVFTSSGTLIVCPAS
                     LIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKVLSTYDIVITTYSLLAKEIPTTKQE
                     GEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGT
                     PIQNNLLDMYSLMKFLRCSPFDEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQL
                     DSTGKPLVALPARRCQLHRLKLSEDERAVYDIFLARSRSALQSYLKRQEGRGSHHGRS
                     PDNPFSRVAQEFGSSVSQGCPAADSQRPSTVHVLSQLLRLRQCCCHLSLLKSALDPTE
                     LESEGLVLSLEEQLSALTLSKVDVSEPSPTVSLNGTCFKAELFDDTRRSTKVSSLLAE
                     LEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNH
                     SQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHR
                     FVCEGTVEEKILQLQEKKKDLAKQVLSGSEGPVTKLTLADLKILFGI"
ORIGIN      
        1 cggggcggag tcaaagacgg aaacccggcg ggccagggct tcctggctgc ggtatggacc
       61 tggttaagtg tccggagcac ggggacgcct gcttcttaaa gaccggcgtc cgcgatggcc
      121 cgaataaggg aaagagcttc tacgtgtgcc ggacgaacac atgcggcttc gtgcaggcca
      181 ccgatattcc tgtttctcac tgtttattgc atgaggagtt tgtggtcgag cttcagggtt
      241 tgtttctacc acaggacaag aaagaatgga ggctgttctt ccgatgtgct agaaccaagg
      301 cggaggggaa gcagtggtgt ggaaacgtcc catggcggca ggatcctaac cctaaagaac
      361 tctctgtaac cagtaagcct cagcagccat ctgagtcaca gcttcactct cccagccagc
      421 cgagaaaccc atttagggtg cttaacaaga atcaaaaaac actcgaacga aaacagtttg
      481 tcgaagaagg tgagagaaag acagctgata agaagctgag agaaaacaat gagcagctct
      541 tggatcaaag gaaagaacag aagcccaaat ctaacagcag gatggagaag gacccctcat
      601 ctgacctggt ggcaactaga cagtctggag gtgacaggga agaacaagag aaatcaaagt
      661 tccagcccaa aactaagaaa gctgaaggaa tggcttccaa gcaaggccat ggagaggtgc
      721 ttcaaggaat acccaagggt cctcacatgt cagagagtga gagtcgaggg gtcccgaaca
      781 agccagagac tctgagagaa aaggaaaccc agcttttggt gccaagtgtt cctggtcaga
      841 acccagaaag caaggtccag aaagagggac acgtcagcag ggagcctctc cagggaccat
      901 ccaagacttg gaggcctgtt cctgaagcac cagcagcacc tgagctttgc tcgggaatgg
      961 cccaccatgc cacctccagc agtgaggaca gcgaagatga tggtgtttcc agtaggccgg
     1021 ggtccccact tctctttgac tcgactgtgg actcacagaa gaaggggagc cttcagcatt
     1081 ctgaccagag tgtgcagaga cagatgcctg ctgcttcagg tgtttccaag aagggagatt
     1141 cctctgaccc agcagcccag cgtgcaaacc taacaacaca gctgaaacaa aagaagggta
     1201 ccctggctgc agtgaacatc caggctctcc ctgataaggg tgagaagttg cttaagcaaa
     1261 tccaggcttt ggaggacgca ctcagtgctc tggctctctc cccagaacaa ggaactaaag
     1321 agaagtgcag cgctcaggaa ccagagcaga gcaacatcac caaagctgct gctgcccctc
     1381 tccacttggt acctccccag ccccttccca ggcccctcat ccagcctgca agctctctag
     1441 gactaaaggc aggccgccag gaaactcctg agggagccag ccagtgctca ggagaaggct
     1501 ggccgggaac ttgctgtatg gaccaggttg gcctccaagc attaggccat atgaaccaac
     1561 atcatcttta taatgtgtgg aaaatcacga gtgaagccat agatgagctg catcggtcac
     1621 tgaagtcttg tccgggtgaa acagcagtag cagaagaccc agctggcttg aaggtcccct
     1681 tgctactgca ccagaagcag gcattagcct ggttactgtg gagggaaagt cagaagccac
     1741 aaggagggat cctggcggat gatatgggct taggaaagac tctgacaatg attgcactca
     1801 tcctaaccaa gaagaatcag cagaaaagca aggaaaagga gagaagcgag cctgtgacgt
     1861 ggctttccaa gaatgactcc tctgtcttta cttccagtgg aacactgatc gtctgccccg
     1921 cttccctgat ccatcactgg aagaacgaag tagagaaacg tgtaaccagc aacagactca
     1981 gaatctatct ctaccatggg ccaaaccgga gtcggcacgc aaaagtactc tctacgtatg
     2041 acatcgtgat tactacttac agccttctgg ccaaggagat tcctacaacg aagcaagagg
     2101 gagaggtccc aggagcaaac ctcagtgtgg agggtacctc agcacctttg cttcaggtag
     2161 tctgggctcg gatcattttg gatgaagctc ataacgtgaa aaaccctcga gtacagacat
     2221 ccattgctgt gtgtaagctc caagcccagg cccggtgggc tgtcactgga acccccattc
     2281 agaacaacct gttggatatg tattcactga tgaagtttct ccgttgctcc ccatttgatg
     2341 agttcagtct ttggaagagc caggttgaca atggttcaat gaaaggaggg gaacggttaa
     2401 gcattttaac caagagcctt ttgctgagga gaacaaaaga ccagctggat tccactggta
     2461 aacctctggt agcactgcct gcacgtagat gccagctgca ccggttaaag ctttctgagg
     2521 acgagcgggc cgtttatgac atctttcttg caaggtcaag gtcagctctc cagtcctatc
     2581 taaagagaca agaaggtaga ggcagccacc atggaagaag ccctgataat ccattcagta
     2641 gagtggctca ggagtttgga tccagtgtgt cccagggctg ccctgcggca gactcccaaa
     2701 gacccagcac cgtccatgtc ctgtcccagc ttctgcggct tcgccagtgc tgctgccatc
     2761 tttctctgct gaagtcggct ctggacccca cagaactgga gagcgaaggc cttgtcctgt
     2821 ccctggaaga acagctcagt gctctgacct tgtccaaggt cgatgtctca gagccatcac
     2881 ccacggttag ccttaatggc acatgtttca aggcggagct ttttgatgac acacgaagga
     2941 gcaccaaggt gtcttctctg ctggcagaac tggaggcgat ccaaaaaggc ccagggtccc
     3001 aaaagagtgt cattgtctct cagtggacca gcatgctgca ggtagtagca ctgcacctca
     3061 agaagaaccg actgacttac gccaccatcg atggctctgt caaccccaaa cagagaatgg
     3121 acctggtgga ggcatttaac cactcccagg gacctcaggt catgctgatc tccctcttgg
     3181 ctggcggtgt tggacttaac ctgactggag gaaaccacct tttccttctg gacatgcact
     3241 ggaatccctc acttgaagac caagcttgtg accggattta ccgagtagga cagaagaagg
     3301 atgttgtcat acacaggttt gtctgtgagg ggacagtgga agagaagatc ttacagctcc
     3361 aagaaaaaaa gaaagatttg gcaaaacagg tcctttctgg atccgaagga cctgtcacca
     3421 agctcacact ggctgacctc aagatcctct ttggcatcta gcttcgtctg ctggagtgat
     3481 gctctttcca tgatcctgga gtcttagatt tcatcctact cgaagtgagg cttgttccta
     3541 tgctaggaat tgaggatggg ttaccaggtt aacaaaccag ttagtcagtc agcttgtgta
     3601 atgtgggcca tagaaaccca ttggttattt cagaattaag cctggcatgt tagtgcatgc
     3661 ctgtaatcca gcaagaagat ggagaggtcc actttggcct gttgtagact ctttctcaaa
     3721 acaaaccaca aagtgctctg gaaggcagcc atgtagtcca tacttcccag cacctgaaag
     3781 gctgagtggg gattgtgagt tagaggccag tttatgccac agagtacatt tcaggccagc
     3841 ctgggctaca gaatgagacc gtgtcttaga aaaacaaagt aaaaccagtg aagctttggc
     3901 gttggatggc ctggaagctg agtctggaag aactgtgtaa gtgctgggtg tgatgctcag
     3961 ggagccatta caagcatagt gacacatgct tagaatgctg gcactttgta ggcaaaggca
     4021 agaggatctc gagtctaagg ttagcctggg taacagtgag ttctttagca gccttaatta
     4081 catgggaaga ccctgtctgt caaacagcct caaagccctg tgctgccatg tttgggactg
     4141 atggcggacc tggtcttatt accttgccta tgtaggctct gtcctgtttc cctgctggca
     4201 ggctgcgtct tgtaagcctc tttgtaacca accatcccta tgaggctggc tgaatctagg
     4261 caggtttagg gtcaagatat ttcatatatc ttgagttgag tattaatcat ggtatcatct
     4321 agcatctctc atttagcctg tgcatcatgg tttcatttag ggatatatca acatcagtgt
     4381 gactgtgtca ctcagtttca tcactgtatc atttgatatc acagtatttc atatagtatt
     4441 tgtcttattt aatgtttatg tccatttcag ttgccagtgg catttaatct gttgtgtcac
     4501 ttagtttctg ccattgtacc acattgtgtt atcattggta tggtcttaat aaacgccttc
     4561 ggccgtgca
//
