LOCUS       NM_027412               3470 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 9C (Ttc9c), mRNA.
ACCESSION   NM_027412
VERSION     NM_027412.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3470)
  AUTHORS   Hansen,G.M., Markesich,D.C., Burnett,M.B., Zhu,Q., Dionne,K.M.,
            Richter,L.J., Finnell,R.H., Sands,A.T., Zambrowicz,B.P. and
            Abuin,A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK169296.1.
            
            On Apr 6, 2007 this sequence version replaced NM_027412.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK169288.1, AK169296.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3470              AK169296.1         2-3471
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 5.67 cM"
     gene            1..3470
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /note="tetratricopeptide repeat domain 9C"
                     /db_xref="GeneID:70387"
                     /db_xref="MGI:MGI:1917637"
     exon            1..274
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            275..523
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             286..801
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /note="TPR repeat protein 9C"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 9C"
                     /protein_id="NP_081688.2"
                     /db_xref="CCDS:CCDS29549.1"
                     /db_xref="GeneID:70387"
                     /db_xref="MGI:MGI:1917637"
                     /translation="MEKRLQEAQVYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPS
                     LPSPLSSLGPQGPALTPEQENILHTIQTHCYNNLAACLLQMEPVNYERVREYSQKVLE
                     RQPDNAKALYRAGVAFFHLQDYDRARHHLLAAVNRQPKDANVRRYLQLTQSELSSYHR
                     KEKQLYLGMFG"
     exon            524..706
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            707..3470
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2397..2402
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2417
                     /gene="Ttc9c"
                     /gene_synonym="2210019E14Rik; 6330408J23Rik"
                     /note="major polyA site"
ORIGIN      
        1 ctcttcctct ctgtgctcct gcaacttaaa ccgaattcct ggaggagtct tccggcttgg
       61 gcctccgctg tggtgcggtt gttgggcaca atgcttccgg cctcttgtgc ctcacttgtg
      121 gactggagac tcaggcctca ctcacttcgg ttcctcaatt aacagcagaa ccatcaacaa
      181 atgtttgttg gataaggaca aataaagaga ttggaaagga gcgaagcctt tttgacttgt
      241 ttcacttgtt cccgcctact ccatcttctt ccagttccaa cagtcatgga gaagcgcctt
      301 caggaggctc aggtatacaa ggaggaagga aaccagcgct accgggaagg aaagtaccga
      361 gatgctgtga gtaggtacca tcgagctctt cttcagctgc ggggtctgga cccaagtctg
      421 ccttcccctc tttctagtct gggacctcag ggcccagctc tcacaccgga gcaagaaaac
      481 atactgcaca ccatccagac ccactgctac aacaacctag ctgcctgtct cctccagatg
      541 gagccagtga actatgaacg agtgagggaa tacagtcaga aagtcctaga acgacaaccc
      601 gataatgcca aggccttgta tcgggctgga gtagccttct tccacctgca agactatgac
      661 cgggctcgac accacctgct tgctgctgtc aataggcaac ctaaagatgc caatgttcgg
      721 cggtacctcc agttgacgca gtcagaactc agcagctacc ataggaagga gaaacagctg
      781 tacctgggca tgtttggtta atgaagaaaa gagacatttc tcaacttgaa ctcaagtgga
      841 caagcaaagg cccattgggg aatctgagcc tcactcagca aaaggagttc accctttacc
      901 tctgacccag gtggatttcc attttgtttc ctgttctgca caagttcttt gctccttaga
      961 ccatctgcat cgtttattgt ctgtccccta gtgtatttgt atggcttaca atctgagaac
     1021 attcatcgac tgtgggtgga atcaactgta tttgtggcat agatttaatg gggtgttatt
     1081 aaatgttctc agacacagag gagagggccg gtgaagggtg agagagtaag gacaggcaaa
     1141 caggaatctt ctgtagtatc ttcagatgct tttgttttgc ttagtgggat ttttttttct
     1201 tttaattata aattgagccc aagtatattt acattaaaga tttgaaatta gctgggtgtg
     1261 gtggcgcaca cgtttagtcc cagcacttgg gggagtcagg cagatttctg agtttgaggc
     1321 tagtctggtc tacagagtga gttccaggac agccagggct acacagagaa accctgtctg
     1381 gaaaaaccaa aaacaaacaa acaaaaaaag atttgaaatt aatcatttta gggctaaggc
     1441 tgtagctcag tggtagagtg ctcgcctagc acgaataagg ccctgggttt aattccccag
     1501 tgctacaaaa ccaaccaacg aaataacaag aaatgaatca aactgttatt taaattaatt
     1561 tcttatactc ctttaatatt tcagagacat tcagattatt ttcctccata aaagtatctt
     1621 ctttctaggc agacttggtg gtagatgcct gcaatcccag cactttggag tctaaaccat
     1681 gacaatcaca aattcaaggt cagtcagatc ttgtctcaga attaaagggc tggagataac
     1741 agctctgtgg gaaaaccctg ggtttaattc ccctttctgg tttttggttt gctttgttcc
     1801 ctcctggtaa tttctagtcc ttgctattgc ttgcactcag atcactgaca aagtacaact
     1861 tatttgtcat taatttagtc tttttttaaa acttctggag tgaatgcctg ggatacatga
     1921 aaccctgttt ttaccttctc tctgaccttg tgccaagaag gaacccaagt gctggtgcac
     1981 tttctctggg tgtgtgtgta tgtatggtgt gggagcttaa acccaccttg cacatgcgag
     2041 gcaagcaccc tgtcatcaag ctacacagct agtcccacag aatttggttt gtatttcaaa
     2101 aagtttctct gcgtagcttt ggctgtccaa gtctgaatat ttcatagata cattctaaag
     2161 tgttcacttt tctgaaaggc attacttttg tcttcttgaa agtgtaccgt aggggctgga
     2221 gagatggctc agcggttaag agcactgact gctcttccaa aagtcctgag ttcaaatgca
     2281 gcgaccactt ggtggctcac aaccatccct aatgagatct gactccctct tctggagtgt
     2341 ctgaagacag caacagtgta cttacatata ataaacctta aaaaaaagtg taccctaata
     2401 aatcatgaca gaacctgttt cctcttcagc tgtcactctg tcttgtaggt gctcaggacc
     2461 ttacagagga aagaaagtac aaggaaagat gtttattgtt tagtgtgttg gaagcacctg
     2521 atagaatcct gaagaagctg tgtcactcat gggtgcaaac ctagggttgt cttgccttgc
     2581 cttgcctcgg tggcattcag ctactggtgg ctggtctgtc attctgttta ccctggatcc
     2641 tctttatgtc atggctgaca attagtagct aagaccatgt agtaggcctc cacctttata
     2701 agcagagata ataagcatgt gtcgctagcc attatataat caaaaaccaa atatgtttct
     2761 tggggtggga ccaactagct tattaataat acctaaaact ctcctaatac tctgtgcttc
     2821 tatgttcctc cccataattt aaataatata tccaacaaga taaaaagctt ttctaccaaa
     2881 cctaaaaaaa tacaaggaca gaactaagta gaatatttta tcttgcagac ttcttaaact
     2941 gctaaagtta gcatatgtct gtgatttcag cactcaagag tgctgaggca gaaggattac
     3001 tataaggcca gtctggctat atactgaatt ccagactagc cagacttacc taacaaaatc
     3061 atgtcttaaa aactcagatg gataaaatcc ctatactggt ttggcaaaat tttgtcatag
     3121 tgagtcctgt cacattaagt tagaacccct tttttttttt taagtttcta ctcagtaatt
     3181 ttccagtata aatctcacca ctacccctca attataaata tccacttgtc taattggagt
     3241 caattaggtc caatctctgt gtcccgctgt aaaatctagt tgctatagtt cctatgccat
     3301 gactgcccct gaatggtcca tttcctatgc ttttaaaaat aattaaaatc attgtcatct
     3361 tgcatgtttc acttcttcag agctggtttt gcttcctggc tgttgtgtaa aaatttgatg
     3421 ttaaaggaag ctgtctatta catcaatgag gaaaaataaa actgatattc
//
