LOCUS       NM_001401370            3670 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 7B (Ttc7b), transcript
            variant 3, mRNA.
ACCESSION   NM_001401370
VERSION     NM_001401370.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3670)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3670)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   3  (bases 1 to 3670)
  AUTHORS   Nakatsu,F., Baskin,J.M., Chung,J., Tanner,L.B., Shui,G., Lee,S.Y.,
            Pirruccello,M., Hao,M., Ingolia,N.T., Wenk,M.R. and De Camilli,P.
  TITLE     PtdIns4P synthesis by PI4KIIIalpha at the plasma membrane and its
            impact on plasma membrane identity
  JOURNAL   J Cell Biol 199 (6), 1003-1016 (2012)
   PUBMED   23229899
REFERENCE   4  (bases 1 to 3670)
  AUTHORS   Blewitt,M.E., Gendrel,A.V., Pang,Z., Sparrow,D.B., Whitelaw,N.,
            Craig,J.M., Apedaile,A., Hilton,D.J., Dunwoodie,S.L.,
            Brockdorff,N., Kay,G.F. and Whitelaw,E.
  TITLE     SmcHD1, containing a structural-maintenance-of-chromosomes hinge
            domain, has a critical role in X inactivation
  JOURNAL   Nat Genet 40 (5), 663-669 (2008)
   PUBMED   18425126
REFERENCE   5  (bases 1 to 3670)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   6  (bases 1 to 3670)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123705.12, AC160340.2 and AC159633.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164131
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-267               AC123705.12        89361-89627         c
            268-422             AC123705.12        68866-69020         c
            423-591             AC123705.12        64062-64230         c
            592-722             AC160340.2         201011-201141       c
            723-844             AC160340.2         181691-181812       c
            845-923             AC160340.2         154323-154401       c
            924-1096            AC160340.2         149966-150138       c
            1097-1160           AC160340.2         141831-141894       c
            1161-1298           AC160340.2         138188-138325       c
            1299-1382           AC160340.2         121942-122025       c
            1383-1487           AC160340.2         120687-120791       c
            1488-1605           AC160340.2         118978-119095       c
            1606-1663           AC160340.2         116952-117009       c
            1664-1736           AC160340.2         111007-111079       c
            1737-1897           AC160340.2         108375-108535       c
            1898-2014           AC160340.2         89834-89950         c
            2015-2112           AC160340.2         82767-82864         c
            2113-2274           AC160340.2         78663-78824         c
            2275-2325           AC160340.2         75328-75378         c
            2326-2466           AC160340.2         67410-67550         c
            2467-2669           AC160340.2         60375-60577         c
            2670-3670           AC159633.2         174324-175324       c
FEATURES             Location/Qualifiers
     source          1..3670
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 50.43 cM"
     gene            1..3670
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /note="tetratricopeptide repeat domain 7B"
                     /db_xref="GeneID:104718"
                     /db_xref="MGI:MGI:2144724"
     exon            1..267
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             147..2891
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /note="isoform 3 is encoded by transcript variant 3; TPR
                     repeat protein 7B; tetratricopeptide repeat protein 7B"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 7B isoform 3"
                     /protein_id="NP_001388299.1"
                     /db_xref="GeneID:104718"
                     /db_xref="MGI:MGI:2144724"
                     /translation="MATRKAGSRLETEIERCRSECQWERIPELVKQLSAKLIANDDMA
                     ELLLGESKLEQHLKEKPLRQGASPRGPRPQLTEVRKHLTAALDRGNLKSEFLQESNLV
                     MAKLTYVEGDYKEALNIYARVGLDDLPLTAVPPYRLRMIAEAYATKGLCLEKLPVSSS
                     TSNLHVDREQDVITCYEKAGDIALLYLQEIERVMLTNIQNRSPKPGPAPHDQELGFFL
                     ETGLQRAHVLYFKNGNLTRGVGRFRELLRAVETRTTQNLRMTIARQLAEILLRGMCEQ
                     SYWSPLEEPPYQSPLDDPLRKGANTKAYTLPRRARVYSGENIFCPQENTEEALLLLLI
                     SESMANRDAVLSRIPEHKSDRLISLQSASVVYDLLTIALGRRGQYEMLSECLERAMKF
                     AFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIPLLAAKLCVGSLHWLEE
                     AEKFAKTVVDVGEKTSEFKAKGYLALGLTYSLQATDASLRGMQEGLQRKALLAFQRAH
                     SLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQGDDANSLHLLALLLSAQKHYH
                     DALNIIDMALSEYPENFILLFSKVKLESLCRGPDEALLTCKHMLQIWKSCYNLTNPSD
                     SGRGSSLLDRTIADRRQLNTITLPDFSDPETVSDSSSSSSLSRTESPLHLFVSSPLHS
                     HPKPDIFVWPPAAHSFSDPGPRHEPSFCNSPEAHFHGFPSLFSVSSVHATSVAASRVE
                     QALSEVASSLQSSAPKQGPLHPWMTLAQIWLHAAEVYIGIGKPAEATACTQEAANLFP
                     MSHNVLYMRGQVAELRGHFDEARRWYEEALSISPTHVKSMQRLALVLHQLGRYSLAEK
                     ILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSPAVPFTVIPRVL
                     "
     exon            268..422
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            423..591
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            592..722
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            723..844
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            845..923
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1096
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1097..1160
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1298
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1299..1382
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1383..1487
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1605
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1606..1663
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1736
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1737..1897
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..2014
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2015..2112
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2274
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2275..2325
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2326..2466
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2467..2669
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2670..3670
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3645..3650
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /note="hexamer: AATAAA"
     polyA_site      3670
                     /gene="Ttc7b"
                     /gene_synonym="Ttc7l1"
                     /note="major polyA site"
ORIGIN      
        1 gccccttccc cggccggcgt tcccgttacg ccgccgagcc gggagccgga gccggagccc
       61 gcggccgcag cgggaggcgg cgcggggccc ggcggcggcg gggcctgcgg ggcctgcggg
      121 cgcgcgccgg gccggccagg gcggccatgg cgaccaggaa ggcgggctcg cggctggaga
      181 cggagatcga gcgctgccgc tccgagtgcc aatgggagcg gatccccgag ctcgtcaagc
      241 agctgtcggc caagctcatc gccaacgatg atatggctga acttctcctt ggggagtcga
      301 aactggaaca gcacttgaag gagaagcccc tgcggcaggg agccagtccc cggggcccca
      361 gaccccagct gactgaagtg cgcaagcatc tgaccgctgc cctggaccga gggaacctca
      421 agtcagaatt cctacaagaa tccaatctgg tcatggccaa actgacttac gtggaaggag
      481 attataagga agccctgaac atctacgccc gggtgggcct cgatgacttg ccgctgacag
      541 ccgtgcctcc ctacaggttg cgaatgattg ctgaagccta tgcaaccaaa ggactttgtt
      601 tagagaaact gcctgtttcg tcctctacca gtaatctcca tgtggaccgg gagcaggacg
      661 tcatcacctg ctatgagaaa gctggggaca ttgcactctt gtacctccag gagatagaaa
      721 gggtaatgct aactaatatt cagaacagaa gccctaagcc tggccctgct ccccacgatc
      781 aagaactagg ttttttccta gaaacaggac ttcagagagc ccatgtcctc tatttcaaaa
      841 atgggaactt gacgagagga gtcgggagat ttagggagct tctcagagcc gtggagacaa
      901 gaacaacaca aaacctacgc atgacgatag ccaggcagtt ggcagaaatc ttgttacggg
      961 gcatgtgtga gcagagctac tggagccctc tggaggagcc tccctaccag tcacctctgg
     1021 atgaccctct ccggaaagga gcaaacacga aggcctacac actccctcgc agagcccgtg
     1081 tctactcagg agagaacatt ttttgtcctc aagaaaatac tgaagaggcg ttgctgttac
     1141 tgctcattag tgaatctatg gccaacagag atgctgtgct gagcagaatt ccggaacaca
     1201 agagtgaccg cctcatcagt ctgcaaagcg cgtctgtggt ctatgatcta ctgaccattg
     1261 cccttggaag acgaggccag tatgagatgc tgtcagagtg cttagaaaga gccatgaagt
     1321 ttgccttcga agagttccac ctctggtacc agtttgctct gtcgctgatg gctgctggga
     1381 agtccgcccg tgctgtgaag gtgctgaagg aatgcatccg gctaaagccg gacgacgcca
     1441 ccatcccgct cttggcagcc aagctctgtg tgggttccct ccactggttg gaagaggctg
     1501 agaagtttgc caaaactgtt gttgatgtgg gagagaaaac atcagaattc aaggccaaag
     1561 gctacctagc tctggggctc acgtatagtc tgcaagccac tgatgcttct ctgcgaggga
     1621 tgcaggaggg cctgcagagg aaggcacttc ttgcgtttca gagggcccat agcctgtcac
     1681 ctacagatca ccaagcagct ttctacctgg ctctgcagct cgccatctcc agacagatac
     1741 cagaagctct aggatatgtt cgccaagctc tccaactgca aggcgacgat gcgaactccc
     1801 tgcacctcct ggctctcttg ttgtcggctc agaagcatta ccatgatgct ctcaacatca
     1861 tcgacatggc cctgagtgaa tacccagaaa attttatact actgttttcc aaagtgaagt
     1921 tggagtcact ctgccggggc ccggatgagg cgctgctcac ctgtaagcac atgctacaga
     1981 tatggaaatc ctgctacaac cttaccaatc ccagtgactc tggacgtggg agcagcctct
     2041 tagacagaac catcgctgac agacgacagc ttaatacaat cactttgcca gacttcagcg
     2101 atcctgagac agtgtcagac tcctcctcct cctcttctct gtcaagaacg gagtctcctc
     2161 tccacctgtt tgtgtcttct cctcttcatt ctcatcccaa acctgacatc tttgtgtggc
     2221 cccctgctgc tcattcattc agtgacccag gtccccgcca tgaaccttca ttctgcaact
     2281 ctccagaagc acactttcat ggttttccct ccctcttttc agttagctcc gtccatgcca
     2341 catcagtagc agcctcaaga gtggagcaag cactgtcaga agtggcctca tctctgcaaa
     2401 gcagtgctcc caagcagggt ccactgcatc cctggatgac gctggcacag atctggctcc
     2461 atgcagctga ggtctacatt ggcattggaa agcctgcgga agctacagcc tgtacccaag
     2521 aagctgccaa cctcttccca atgtcccata atgtcctcta catgcggggc caggttgctg
     2581 agcttcgagg acacttcgat gaggcccggc ggtggtacga agaagcctta tccatcagcc
     2641 ctactcatgt gaagagcatg cagcgactgg ctctggtcct tcaccagctg ggccgctaca
     2701 gtctagctga gaagattctc cgggatgcag tgcaggtgaa ttcgacagcc cacgaggtct
     2761 ggaacgggct gggcgaggtc ctccaagctc agggtaacga cgcagcagcc accgagtgct
     2821 tcctgacagc cttggaactg gaggccagca gccctgctgt acccttcact gtcatccccc
     2881 gtgtgctctg actggccgcc cgcctcacct gccacacggg ctcagatgct ctgcgcgggc
     2941 tgccggggcc atcctgtcac tcagtggacg cacctgcaga accaaggccc tggatggata
     3001 tgtaaccaga gtggattaac ctcaccaacc cagaatcatt gctctctgct cctgcatcca
     3061 ttcattcttg tttttgccag atccatgact gtcctctgaa tctactgatg tccccaatgg
     3121 attatgtgcc atattcagtt agtcgacgcc tgagttttaa gtaaaatgat tacggactta
     3181 atcagcgaat gtagaagaag atattccagg ttaaagttca gtggcagaac agattatttt
     3241 tatcagtgct gtaatgaaag caactgtcct gtcctctgac caccccgaca cctctcccgc
     3301 cccgccctca gcccaaaacc aaatgtgaat tttctgtttc ccacctcagt actcgtccat
     3361 gccaggacac cagctgacaa cgtctcggtc tcattgtcac cagttgtacc atgtggtgaa
     3421 ttactgttct ctccttagaa caaagcccga gtctaagaat atttatattt taccaatata
     3481 tggctgttac aagagaagga aatatgagtt atttaagttt aactttttta tgtgaattca
     3541 gagtttattt atcgatggaa atatgtacaa agaagcttca aatggaatat ttaccgacat
     3601 tccttataca tgacagacac ttggctaaac aggaagatga tgttaataaa aaaaatgatt
     3661 tttaaatgga
//
