LOCUS       NM_001033337            3711 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 38 (Ttc38), transcript
            variant 1, mRNA.
ACCESSION   NM_001033337 XM_139515 XM_901998 XM_902001 XM_907413
VERSION     NM_001033337.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3711)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3711)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117784.13 and AC139513.10.
            
            On Jan 11, 2023 this sequence version replaced NM_001033337.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.649102.1,
                                           SRR13422598.1150617.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                AC117784.13        173489-173564
            77-154              AC117784.13        174292-174369
            155-236             AC117784.13        175635-175716
            237-408             AC117784.13        177165-177336
            409-582             AC117784.13        179851-180024
            583-658             AC117784.13        182610-182685
            659-778             AC117784.13        185597-185716
            779-838             AC117784.13        187476-187535
            839-877             AC117784.13        188780-188818
            878-959             AC139513.10        70649-70730
            960-1125            AC139513.10        71952-72117
            1126-1285           AC139513.10        72717-72876
            1286-1359           AC139513.10        73108-73181
            1360-3711           AC139513.10        75603-77954
FEATURES             Location/Qualifiers
     source          1..3711
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 40.42 cM"
     gene            1..3711
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /note="tetratricopeptide repeat domain 38"
                     /db_xref="GeneID:239570"
                     /db_xref="MGI:MGI:2146198"
     exon            1..76
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..1453
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /note="isoform 1 is encoded by transcript variant 1;
                     tetratricopeptide repeat protein 38; TPR repeat protein
                     38"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 38 isoform 1"
                     /protein_id="NP_001028509.2"
                     /db_xref="CCDS:CCDS27724.2"
                     /db_xref="GeneID:239570"
                     /db_xref="MGI:MGI:2146198"
                     /translation="MSLRDCQAWKNAGLPLSTTSNEACKLFDATLTQYVKWTNDKSLG
                     GIEGCLSKLRAADPTFAMGLAISNGLVLVGTGTSVALDKDLALAVKTMVELSQTQTLT
                     PREQLHVSAVEMFAKGNFPRACDLWEQILRDHPTDMLALKFSHDAYFYLGYQEQMRDS
                     VARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAH
                     VHEMRAEIKDGLEFMQQSEGHWKDSDMLACHNYWHWALYLIEKGDYEAALTIYDSHIL
                     PSLQASGTMLDVVDSCSMLYRLQMEGVPLGQRWQTVLPVTQKHTRDHILLFNDAHFLM
                     ASLGARDLQTTRELLTTLQEASKSPGENCQHQLAKDVGLPLCQALLEAENGNPDRVLE
                     LLLPIRYRIVQIGGSNAQRDVFNQLLIHAAMTCTSSVHKNVARSLLMERDALKPNSPL
                     TERLIRRAAAVHLMQ"
     exon            77..154
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            155..236
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            237..408
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            409..582
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            583..658
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            659..778
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            779..838
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            839..877
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            878..959
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1125
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1285
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..1359
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..3711
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3243..3248
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /note="hexamer: AATACA"
     polyA_site      3262
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
     regulatory      3689..3694
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /note="hexamer: AATAAA"
     polyA_site      3711
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /note="major polyA site"
ORIGIN      
        1 agagactcca aaagctttga ccggtgctgt cactctgcag accaaagcta taatcatgtc
       61 actgcgagac tgccaggcgt ggaagaatgc tgggctccca ctctcaacca caagcaatga
      121 agcctgcaag ctgttcgatg ccaccttgac tcagtacgtc aagtggacca atgacaagag
      181 tcttggtggc atcgagggct gcctgtcaaa gctcagggca gcggatccaa cctttgccat
      241 gggccttgcc atctctaacg gccttgtgct cgttggcacg ggaacctccg tggcgctgga
      301 caaagacctg gccctggctg tgaagaccat ggtggagctt tcccaaaccc agactctgac
      361 gcctcgggag cagctgcatg tgtctgcggt ggagatgttt gccaagggga acttccccag
      421 agcctgtgat ctctgggaac agatcctccg ggaccacccg acagacatgt tggccctgaa
      481 gttttcccac gatgcctact tctacctggg ctaccaggag cagatgcggg attccgtggc
      541 tcgagtttac cccttttgga cgcctgacat cccccttaac agctacgtga aaggcatcta
      601 ttctttcgga ctgatggaaa ccaacttcta tgaccaggca caaaagcttg ccaaagaggc
      661 tttatctatt gagccaacag atgcatggtc agtgcacact gtggcccacg tacatgaaat
      721 gagagccgag atcaaagacg ggctggagtt catgcagcaa tcggaaggtc actggaagga
      781 ctctgatatg cttgcttgcc acaattactg gcactgggcc ctgtacttga ttgaaaaggg
      841 agactatgag gccgcactaa ccatctatga cagccacata ctccccagcc tgcaggccag
      901 tggtaccatg ctggacgtgg tggacagctg ttccatgctc taccgtcttc agatggaagg
      961 ggtgcccctt ggccagcggt ggcagactgt tctacctgtg acccagaagc acacccgaga
     1021 ccacatcctc ctgttcaacg atgctcactt cctgatggcc tcactgggtg cacgggacct
     1081 ccagaccacc cgggagctgc tgaccaccct gcaggaggcc agcaagtccc caggggagaa
     1141 ctgccagcac cagttggcaa aagacgttgg gctgcccctg tgccaggccc tcctggaggc
     1201 tgagaacgga aaccctgacc gagtcttaga actcctcttg ccaatccgat accgaattgt
     1261 ccagattggg ggcagcaacg cccagagaga tgtcttcaac cagctgctga ttcacgcggc
     1321 catgacctgc acctccagtg tacacaagaa tgtagcccgg agccttctga tggagcgtga
     1381 cgccttgaaa cccaactcac ccctgacgga gcggctgatc cgaagggcgg ccgctgtcca
     1441 tcttatgcag tagaaaccgc caggtcctta gcctacagct caacactgac ctcctggcgt
     1501 gaggttgact gcctggttgg gttagggtac ggttaggaaa cagctgggtt tgtttatcag
     1561 aggttaaagt tcagtcctga gcagaattct ccaaatcagt agtttggtca aagtagggaa
     1621 cccaagttaa ttttgagtga tgttcagaat tcctctcagg gccaacatgc gttttttaag
     1681 cctccagaac caaagcagtg gctatcattt tcaggtgcct tgaacattgt attttcttgt
     1741 tctgaagtcg gcaggcagcg aagagatgtg gccaggtcag ctgggaggtc tagaagtcta
     1801 tgtgtgtgca catgcgcacg cactcgtaca cacacacact gcactagtga atcctttcca
     1861 tttagttttc cttatattct gcacaggtcc tgctgtccca tttccctggg gaggattcca
     1921 gagagctgcc tggggtccca gtgagcaggg gcatttcctt tctgggggga gggtatcctg
     1981 tctcgttggc tttggttgtc agccccagac aactgcacct gccaccgtcc ccagagacga
     2041 ggggaagaat gccttctgcc tccctggggg acttggtggt gccaactgga gcttctcttt
     2101 agacttcact tgggagtaaa tcttgaggga tgtggcttcc ttggctagct ccgattctgc
     2161 tcctgagagt gggtgtgaga ccctcagctg tcttagtcgg ggttctattg ctgtgaagag
     2221 acgccatgac caaggcaact cttacaaagg aaaaccttta tttggggctg gctgacagtt
     2281 tcagaggttc cgtccattat catcatggtg ggaagcgtgg cggcatccag gcaggcatgg
     2341 tgcaggagga gctgagagtt ctgcatcttg agctacaggc atccaaaagg agaccatctt
     2401 cttgcagcca gcaggagggt cccttctgca ctgggtggag ctaggccctc aaagtctgcc
     2461 cccacagtga cactcttcct ccaacaagta cacacctcct aatacttgtc actccctagg
     2521 aggcagaggc aggcggattt ctgagttcaa ggccagcctg gtctacaaag tgagttccag
     2581 gacagtcagg gctatacaga gaaatcctgt ctcgaaaaaa ccaaaaaaaa aaaaaaaaac
     2641 caaaaaacaa acaaacaaac aaacaaaaaa aaaaaacaaa aaccaacttg tcgctcccta
     2701 tgagccaagt gttgagtcca tggggaccaa acctattcaa accactacac cagcttaggg
     2761 ctgctctgct gtggcaaata accagataag tgacatagcc atcacgaggt ttaagcccat
     2821 ctcctgcttc tgtgacaggg acatccctcc tggaagttga tgcagttcct acttaagtag
     2881 ggactgatgg gcaggtggga gtggggagtg ggttggaggt ctccaaacca gatctttgct
     2941 tagcctgctc agagtccctg cagtctgctg aggactggac aggttttggg cattcattaa
     3001 aacaattggt cccgttgact accctctcct atgggaacct ctgagcagct cccaagtgcc
     3061 aggtttgggt tgcgtcctag ggagatgggc ttctctaatc ttagctggat gaggcagcaa
     3121 gtcaagaaat tgtgtaatcg ccataggatt tgaagaggta ctgtctccat atcagggagc
     3181 ctggggacag gtgccaaggg ggaacctcct cattagtcct cattatgtat atgattccaa
     3241 ataatacatg attcagccag aagcggagtc ttgctctctg tctctttcag aaagccttcc
     3301 accctgcctg tgggctggtg acagtgcctt ctctttgccc catagccctt ggcacttgcc
     3361 cttgctattg aaccactttg tgctgtgatc tctggtattc aatggcttcc attgaatgcc
     3421 ttgtctgtaa aagctggtat gtgtaggctt tcatgaaaga aggcatgcat ctgccaggga
     3481 caggcgactg atcttaaagg gaaatgtgta tgcgtctgga gagatggctc catggctgag
     3541 cacttgccgt tcttccagat gaccagagat cagtacctag cgcccacgta gagcctgtaa
     3601 atctagcctc aagggacctg acactctctt ctggcctctg taggcacttg catacctgta
     3661 catacgcaca cgtcggcaaa aaaaataaaa taaaaatatt tttaaagcca a
//
