LOCUS       NP_001028509             465 aa            linear   ROD 05-MAY-2025
DEFINITION  tetratricopeptide repeat protein 38 isoform 1 [Mus musculus].
ACCESSION   NP_001028509 XP_139515 XP_907091 XP_907094 XP_912506
VERSION     NP_001028509.2
DBSOURCE    REFSEQ: accession NM_001033337.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (residues 1 to 465)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (residues 1 to 465)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117784.13 and AC139513.10.
            
            On Oct 20, 2007 this sequence version replaced NP_001028509.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.649102.1,
                                           SRR13422598.1150617.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Mus musculus"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 40.42 cM"
     Protein         1..465
                     /product="tetratricopeptide repeat protein 38 isoform 1"
                     /note="tetratricopeptide repeat protein 38; TPR repeat
                     protein 38"
                     /calculated_mol_wt=52093
     Region          56..419
                     /region_name="StaR_like"
                     /note="a well-conserved protein found in bacteria, plants,
                     and animals. A family member from Streptomyces
                     toyocaensis, StaR is part of a gene cluster involved in
                     the biosynthesis of glycopeptide antibiotics (GPAs),
                     specifically A47934. It has been speculated...; cd05804"
                     /db_xref="CDD:100115"
     Region          104..137
                     /region_name="TPR 1"
                     /note="propagated from UniProtKB/Swiss-Prot (A3KMP2.2)"
     Region          176..209
                     /region_name="TPR 2"
                     /note="propagated from UniProtKB/Swiss-Prot (A3KMP2.2)"
     Region          248..281
                     /region_name="TPR 3"
                     /note="propagated from UniProtKB/Swiss-Prot (A3KMP2.2)"
     CDS             1..465
                     /gene="Ttc38"
                     /gene_synonym="9030019H09"
                     /coded_by="NM_001033337.5:56..1453"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /db_xref="CCDS:CCDS27724.2"
                     /db_xref="GeneID:239570"
                     /db_xref="MGI:MGI:2146198"
ORIGIN      
        1 mslrdcqawk naglplstts neacklfdat ltqyvkwtnd kslggiegcl sklraadptf
       61 amglaisngl vlvgtgtsva ldkdlalavk tmvelsqtqt ltpreqlhvs avemfakgnf
      121 pracdlweqi lrdhptdmla lkfshdayfy lgyqeqmrds varvypfwtp diplnsyvkg
      181 iysfglmetn fydqaqklak ealsieptda wsvhtvahvh emraeikdgl efmqqseghw
      241 kdsdmlachn ywhwalylie kgdyeaalti ydshilpslq asgtmldvvd scsmlyrlqm
      301 egvplgqrwq tvlpvtqkht rdhillfnda hflmaslgar dlqttrellt tlqeaskspg
      361 encqhqlakd vglplcqall eaengnpdrv lelllpiryr ivqiggsnaq rdvfnqllih
      421 aamtctssvh knvarsllme rdalkpnspl terlirraaa vhlmq
//
