LOCUS       NM_172878               4776 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 34 (Ttc34), mRNA.
ACCESSION   NM_172878 XM_006538862
VERSION     NM_172878.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4776)
  AUTHORS   Harrow,J.L., Steward,C.A., Frankish,A., Gilbert,J.G.,
            Gonzalez,J.M., Loveland,J.E., Mudge,J., Sheppard,D., Thomas,M.,
            Trevanion,S. and Wilming,L.G.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL607032.16.
            
            On or before Mar 4, 2019 this sequence version replaced
            XM_006538862.3, NM_172878.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849374,
                              SAMN00849381 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-197               AL607032.16        53622-53818
            198-1017            AL607032.16        54997-55816
            1018-1822           AL607032.16        71845-72649
            1823-2048           AL607032.16        74167-74392
            2049-2253           AL607032.16        75516-75720
            2254-2420           AL607032.16        76767-76933
            2421-2691           AL607032.16        77368-77638
            2692-2906           AL607032.16        78300-78514
            2907-4776           AL607032.16        81462-83331
FEATURES             Location/Qualifiers
     source          1..4776
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 85.47 cM"
     gene            1..4776
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /note="tetratricopeptide repeat domain 34"
                     /db_xref="GeneID:242800"
                     /db_xref="MGI:MGI:2445205"
     exon            1..197
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            198..1017
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..3434
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /note="TPR repeat protein 34"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 34"
                     /protein_id="NP_766466.4"
                     /db_xref="CCDS:CCDS19015.2"
                     /db_xref="GeneID:242800"
                     /db_xref="MGI:MGI:2445205"
                     /translation="MSAQELVACLCQEGDKHLALEELPLATAFYLAAFSCHAPSAVRH
                     VRALLAESPGAPVVATLESWCCGDSQIPAIHWDGMTVVSLTGPLASAFLGAICPDHPA
                     TVLYLLAGLLAQGRHVEVVQRCNTLLDAHSKQALELQLTRALAWVLSVDQAREGIAAY
                     LQNFASSAARTVAFIRSHQQPYLPRLLGSLQNYLSGHPKTSASQQETNCRGLLEALDP
                     RGSWMGAMSPEALLRRGRFEDCRAACSRDLQPDSTGSRPQGEHLAALLITRAAATFFQ
                     DGPAGDMLRDLQEAFCESPAGARKQFQALLSAEDRERLQAQAQEAAGLGFARFLEAVR
                     SRELRRDADRELLVPVTRALRVLLRVAPARRRPALGIRLAECLLLAGDVAGARAQCER
                     LLRPRRPGERAGDRTGEHAPLLALRGFCALHAGDARRAREDFQAVVERAAPHAGGCVR
                     ALCGRGLLRVLAGSAFLGALDYVTACRLRPEEALLIAKAYVPWNQRGLLLTVLREEGR
                     KMLLRSPSYAGKAAQAQEGDAYGVYQLATLLIGMDAEDETSCLLAADALYRLGRLDDA
                     HKSLLVALSQRPQAAPVLVRLALLQLRRGFCYDANQLVKKVAQSGDTACLQHMLDIFH
                     HEDLQLLQDHCHTRALSILRARPGGSDSEAHTREAIAYLSLAIFAAGSGGSESLLVRA
                     RCYGLLGQKKTAMFDFNAILREEPGNVKALCGRALVHLALDQLQEAVDDMVSALKLDP
                     GTVIPEILSLKTEVQLPLTQGLYTRCRVLLNQCLHTGVPLREEDTQGLLAMGKALIRI
                     NATQPSWRLLLTDILTGLGKYQEAGTHLQEALHLTPSSEAAQARQGLLQLKKGDVSAA
                     VHGLQCLAERDTQDLGFLLCLLDSPERQSLVQTAAKEASNILDLGNPGQALSYCSLAI
                     LAGGNNPYHLRLRVACLTQLQEYDRALRDLDRVLQHPAEDSDLPRQSEDFCTRGRLLL
                     SLGDKDGAAGAFTQALALAPAQAQNSLLEQPGQAMTASVFLIHGQRCLEEEHFEEAWT
                     AVQNGLLVDPSHSGLKKLKLRTRKVATSGCRLH"
     exon            1018..1822
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1823..2048
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2049..2253
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2254..2420
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2421..2691
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2692..2906
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2907..4776
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      4051
                     /gene="Ttc34"
                     /gene_synonym="4932418L02; B230396O12Rik"
                     /note="major polyA site"
ORIGIN      
        1 gacactctcc ctggaaactg gccttgcctg ttctgtgtct actgtgttgg gcctgtgtct
       61 ctaaaggccc agagcccctg gggatgacca gcagcttcac ccaccacccc caacctgggg
      121 cctaataagg aatttgagtc atcagaacct tcccatgtcc agagccttcc catgtccaga
      181 cctggctggt tcggcttgta cccaggaaga ccgaacatga gccagtgggg actgagaccg
      241 tgatgtcagc tcaggagctc gtggcctgcc tctgccagga gggggacaag cacctggccc
      301 tggaggagct tcccttagcc acagccttct atctggccgc cttcagctgc catgcgcctt
      361 cagccgtgcg gcatgtacgg gctctcctgg ctgagtcgcc aggggcacct gtggtggcca
      421 ccctggagtc ctggtgttgt ggggacagcc aaatccctgc tatccactgg gatggcatga
      481 cggtggtctc cctgactggg ccactggcct ctgccttcct cggtgccatt tgcccggatc
      541 accctgccac tgtcctgtac cttttggctg gcctgctggc ccaaggacgt catgtggaag
      601 tggtgcagcg ctgtaacact ctgctggatg cacactccaa gcaggccctg gagcttcagc
      661 tgacacgtgc cctggcctgg gttctgtctg tggaccaggc cagagagggc atagctgcct
      721 atcttcagaa ctttgcctcc agcgcagccc ggacagtggc cttcattcgt agccaccagc
      781 agccctacct ccccaggttg cttggcagcc tccagaacta cctctcagga cacccgaaaa
      841 ccagtgccag ccagcaagag accaactgcc ggggactact ggaggccctg gatcccagag
      901 gcagctggat gggtgccatg tcaccggaag ctctgcttcg cagaggccgg tttgaggatt
      961 gcagggcggc atgtagccgg gaccttcagc ctgactcaac agggagtaga ccccaaggtg
     1021 agcacctggc ggccctgctg atcacccgag cggccgccac cttcttccag gatggaccag
     1081 ctggggacat gctgcgggac ctacaggagg ccttctgcga gagccccgcc ggcgcacgga
     1141 agcagttcca ggccctgctg tccgcggagg accgcgaacg cctgcaggca caggcgcagg
     1201 aggccgcggg cctgggcttt gcccgcttcc tggaggctgt gcgaagccgc gagctgcgcc
     1261 gggatgcgga ccgcgagctc ttggttcccg tgacgcgcgc gctccgcgtc ctgcttcgcg
     1321 tggcacctgc ccgacggcga ccagcgctgg gcatccgcct ggccgagtgc ctgctgctgg
     1381 ccggggacgt ggcgggggct cgcgcgcagt gtgagcgcct cctccgtccc aggcgtccgg
     1441 gggagcgcgc gggggaccgc accggagagc acgcgccgct gctagcgctg cgcggcttct
     1501 gcgcgctgca cgcgggcgat gcgcggcgcg cgcgcgagga cttccaggcc gtggtggagc
     1561 gcgcggcgcc acacgcggga ggctgcgtgc gcgcgctgtg cggccgaggg ctgctacgcg
     1621 tgctggcggg tagcgccttc ctgggcgcgc tggactatgt caccgcctgc cggctgcgac
     1681 cagaggaggc gctgctgatc gccaaggcct acgtgccctg gaaccagcga gggctgctgc
     1741 tgaccgtgct gcgggaggag ggccgcaaga tgctgctgcg ctcgccgagc tacgcgggga
     1801 aggctgcgca ggcgcaggag ggggatgcct atggtgttta ccagctggcc acgctgttaa
     1861 ttgggatgga tgcagaggac gagacttcct gcctcttggc ggctgatgcc ctgtaccgct
     1921 tgggccgtct ggatgatgct cacaaatccc tgctggtggc tctttcccag aggccccagg
     1981 cagcccctgt gctggtgcgg ctggccctac ttcagctgcg gaggggcttc tgctatgatg
     2041 ccaaccagct agtaaagaag gtagcccagt ctggagacac tgcctgcctc cagcacatgc
     2101 tggacatctt ccatcatgag gacctgcagc tgctgcaaga ccactgccat acacgggcat
     2161 taagcattct gcgggctcgg ccaggtgggt cagacagcga ggcccacacc agggaagcca
     2221 tcgcctatct ctctttggcc atctttgctg cagggagtgg aggcagtgag tccctcctcg
     2281 tccgagcccg ctgttacggg ctcctgggtc agaagaagac agccatgttt gatttcaacg
     2341 ccatacttcg ggaggaacca ggaaatgtga aagctctgtg tggacgagct ctcgtgcatc
     2401 tggccctgga ccagctgcag gaagctgtgg atgacatggt ctccgccctg aagcttgacc
     2461 cgggcactgt tatcccagag attctctccc tgaagacaga agttcagttg cccctcaccc
     2521 agggcctgta cacgcgctgc cgggtcctcc tgaaccagtg tctgcacact ggggtgcccc
     2581 tcagggaaga ggacactcaa ggcctccttg ccatggggaa ggcactgatt agaataaatg
     2641 ctacacagcc cagttggcgc ctgcttctca cagacatcct tacaggactg ggcaagtatc
     2701 aggaggccgg cacccatttg caagaagcgc tacacctcac cccatcatca gaggctgccc
     2761 aggcccggca aggcttgctc cagcttaaaa aaggagatgt gtcagctgct gtccatggct
     2821 tgcagtgcct ggcagagaga gatactcagg acctcggctt cctgttatgc ctccttgact
     2881 ccccagagcg gcagagtctt gtgcagaccg ctgccaagga agcaagcaac atcttggatt
     2941 tagggaatcc ggggcaggca ctaagctact gttctttggc catcctggct gggggcaaca
     3001 atccttacca tctgcgtctc cgggtggcct gcttgaccca gctgcaggag tatgacaggg
     3061 cactcaggga cctggaccgg gtgctgcagc accctgcaga ggacagcgac ctgccaagac
     3121 agtcggaaga tttctgcacc cggggtcgac tgcttctgag cctgggggat aaggatggag
     3181 ccgcaggggc ctttacccag gctttggccc tggcaccagc ccaggctcaa aacagcctgt
     3241 tggagcaacc aggccaggcc atgacagcca gtgtgttcct gatccatggc cagcgctgtc
     3301 tagaggagga gcactttgag gaggcctgga cagcagtcca gaatggactc ctagtggacc
     3361 ccagccacag tgggctaaag aaactgaagc tgagaactcg caaggtggcc acctctggct
     3421 gcagactaca ctaacctgct tgactcctcc agggacccag tgcccatgcc agcaagcaca
     3481 gcccaggcag ccccttccct cataaggccg agagacctca ggcttccact cagcctactg
     3541 tccaaagtgt cagcgtgtga tttggtgcat ctgagctgag acagctttat gtgggcaaac
     3601 ttcccatcca gtctcgatct ctgccagtgg gctccagcct gtcaccttca ctaccaccat
     3661 caccaaagct gtcaccaaag ctgtcacagg ggccaggctg gagcacttca tgcactcaca
     3721 atggacagga ctgcttggca tgacatggca aacctcttcc ttagcttcta ctgtgaggag
     3781 agtggggtct gagacttccc tttgccctgg gctgccttct ccgcaccttc ctcctgcagt
     3841 ccttttagca ccgttgaaag ccaccgtctg acctacacaa accaaccccc caactcagat
     3901 acaggattcc tgagcctgcc cacccccagg cagtgatgaa gtgactggat aggattagca
     3961 atcccttctt atgaaagcct cacctgccct gacatccttt catggtccgg gagccctcct
     4021 ccctactgct gtaatacctg agacctgcca agctatgcct ccgtgtgttc cataggaggt
     4081 cccagaaagg ctcttctgtg aggcacaccc tggttcctgc cacccttccc caccatgatc
     4141 tctaggatag tctggtgcac atctccaccg ggttaccctt tcacccacct catgtccatc
     4201 tctccacctg ggtgtccctt ggcactgcag acacctgcgt tcatccagca gcaccaaggt
     4261 caagcagttg tcacctgggt gtgccctcgc atcctgtgcc tttgctggct ttcagcctaa
     4321 ggtaccctgt catgcccatt ccctccagaa cacctcagcc tttacattct aaacatgaag
     4381 gaactcagat ctggcagagc tcctcccggc taccaggggc atcactcagc acctcatggt
     4441 ctcctgaggt cttagctcgc tctctctctg ccactgatct ggcaccttgc tgtggtctga
     4501 atgggttccc agaaatccat gcattgagac cccaccactg atggggtgtt gccagaatgt
     4561 gggtcttgtg ggtggggagg agttaggttg tgatgatgga gccctaaaga ttggggtctg
     4621 tggctttgaa ggcacttcag cccacccatg tatgagtact gagtcgggga gtgccaccta
     4681 caaaccaggc tgcaggcctg tccccacata cctaccaggg ctcctccttg gagttctcct
     4741 tccacagcca tgagaaataa atctcacttg ataagg
//
