LOCUS       NM_026213               1832 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 33 (Ttc33), transcript
            variant 1, mRNA.
ACCESSION   NM_026213
VERSION     NM_026213.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC135079.9.
            
            On Nov 17, 2006 this sequence version replaced NM_026213.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061018.1, AK013464.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-209               AC135079.9         84623-84831         c
            210-431             AC135079.9         80588-80809         c
            432-513             AC135079.9         61941-62022         c
            514-645             AC135079.9         58261-58392         c
            646-1832            AC135079.9         52055-53241         c
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 1.99 cM"
     gene            1..1832
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /note="tetratricopeptide repeat domain 33"
                     /db_xref="GeneID:67515"
                     /db_xref="MGI:MGI:1914765"
     exon            1..209
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /inference="alignment:Splign:2.1.0"
     exon            210..431
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /inference="alignment:Splign:2.1.0"
     CDS             211..999
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /note="osmosis responsive factor; TPR repeat protein 33"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 33"
                     /protein_id="NP_080489.1"
                     /db_xref="CCDS:CCDS27364.1"
                     /db_xref="GeneID:67515"
                     /db_xref="MGI:MGI:1914765"
                     /translation="MASFGWKRRIGEKVSKATSQQFEAEAADEKDAAENEDGNWLQAS
                     KRRKETLQEGCKQRSQQLKDEGAQLAENKRYKEAIQKWDEALQLTPGDATLYEMKSQV
                     LLSLHEMFPAVHAAEMAVKRNPHSWEAWQTLGRAQLGLGEIVLAIRSFQIALHIYPMN
                     PELWKEDLSWARKLQEQQKVAQRIENKEMPPEGPDLSPGSIPDYDFESDEIVAVCAAV
                     AEKQKSVSANKTMVIVSASGTVEIVNEKEEGSSTPDGSVFIKAR"
     exon            432..513
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /inference="alignment:Splign:2.1.0"
     exon            514..645
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /inference="alignment:Splign:2.1.0"
     exon            646..1832
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1797..1802
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /note="hexamer: AGTAAA"
     polyA_site      1818
                     /gene="Ttc33"
                     /gene_synonym="2410099M07Rik; 2900001O04Rik; Osrf"
                     /note="major polyA site"
ORIGIN      
        1 agggcgctgg cgggtaagaa agtcttcttt tcttctgtcc gccttgctgg actttagaac
       61 gtcccaggat gatttcatgc ttttttttta aaataaagaa tcgggaagca caggcaggca
      121 aggcagatta gaatcccggc agaatagttt ccgtttccgg tgccaaaggg cacgtggaat
      181 gtaaacacgg caccacagag tgttttcaga atggcttcct ttgggtggaa gaggagaatt
      241 ggcgagaagg tatccaaggc cacgtcccag cagtttgaag cagaagcagc tgatgagaag
      301 gatgcagctg agaacgagga tgggaactgg cttcaggcca gcaaacggag gaaggaaacc
      361 ctgcaggagg gctgtaaaca gaggagccaa cagctgaagg atgaaggggc tcagctggct
      421 gaaaacaaac gatacaagga ggcaattcag aagtgggatg aagcactaca gctaacccca
      481 ggtgatgcca ccctttatga gatgaaatca caggtcctgc tgtctcttca tgaaatgttt
      541 ccagcagtcc atgcagcaga gatggctgtc aagcgtaacc cacactcgtg ggaggcgtgg
      601 caaactttag gtcgagctca gcttggatta ggagagatag ttctggcaat tcgaagcttt
      661 caaatagccc tgcacatata tccgatgaac cctgaactct ggaaggaaga cctttcttgg
      721 gccagaaagc tccaagaaca gcagaaagta gcccagagga ttgaaaacaa agaaatgccc
      781 ccggaaggcc cggacctctc tccagggtcc atcccggact atgactttga aagcgatgag
      841 attgttgctg tttgtgcagc cgtggcagaa aaacagaagt cggtgtctgc aaataaaaca
      901 atggttattg tgtcggcgtc tgggactgta gagatcgtaa acgagaagga agagggctct
      961 tccaccccag atggctccgt ctttatcaaa gcccggtgaa gccatacaca atggagagat
     1021 gtttgaatct tttttttttt gttgtttgct tgtttgctac ttaatgtttt gatgacatag
     1081 gatatgcact gtggaggaag agggggaaaa aagaaatcct gttttaaaac gattttttag
     1141 gtgaaacata gaaaaatcaa gttgtggaat tattcttcag tgagcggact atgcttctgt
     1201 aacttcaata tatatactta gagttagcat cttacgtgaa atgtgttctg atcgataagc
     1261 atttaatttg actgtatggg aaagtaccct taaaggcaca gtttggaaag tgtgttcttg
     1321 aatagtgtgt cttgacaggc gtgttactac agtgccgaca tggagacttt gctttgtgat
     1381 aaaggaagtg tgcggtttct ttccctcctg taaatctgct gttgtcattc tcccattttt
     1441 cttgcttcac cagtgtaagt tttcatcaag attgaatatt tctgacattc ttttggattc
     1501 aaagttattg ctttgttata tgtgaatatt tgaaatattt caagtttgcc taaaaatgca
     1561 tgcagatgta tgtgtcctga acatttcttt gaaggtttcg ttgttcttgt tgttgtgcta
     1621 atgttctaat ttgtgcttct gttttgactt taaagttaaa aagtgctaac tgtcttcttc
     1681 aggacttgat aactggatac tggtgtgtca gagatggatt cattttactg tcaagattga
     1741 gtcatcttta ccacaagtca gtcctttgtc aagatgaatg gcatttgcag attgtcagta
     1801 aagtctattt ctgcattatc ctggtcaaaa aa
//
