LOCUS       XM_036159879            6862 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus tetratricopeptide repeat domain 3 (Ttc3),
            transcript variant X38, mRNA.
ACCESSION   XM_036159879
VERSION     XM_036159879.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6862
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..6862
                     /gene="Ttc3"
                     /gene_synonym="2610202A04Rik; D16Ium21; D16Ium21e;
                     mKIAA4119; TPRD"
                     /note="tetratricopeptide repeat domain 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 mRNAs, 82 ESTs, 11741 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 33 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:22129"
                     /db_xref="MGI:MGI:1276539"
     CDS             1162..5640
                     /gene="Ttc3"
                     /gene_synonym="2610202A04Rik; D16Ium21; D16Ium21e;
                     mKIAA4119; TPRD"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X16"
                     /protein_id="XP_036015772.1"
                     /db_xref="GeneID:22129"
                     /db_xref="MGI:MGI:1276539"
                     /translation="MKMLRSLIQDGYTALLEQRCRSAAQAFTELLNGLDPQKIKQLNL
                     AMINYVLVVYGLAVSLLGIGRPEELSEAENQFKRIIEHYPNEGLDCLAYCGIGKVYLK
                     KNRFLEALNHFEKAKTLISRLPGILTWPTSNVIIEESKPEKVKVMLEKFVEECKFPPV
                     PDAVCCYQKCRGYSKIQIYLTDPDFKGFIRISCCQYCKVEFHMNCWKKLKTTTFNDKI
                     DKDFLQGICLTPDCEGIISKIIIYSSGGQVKCEFEHKVIKEKVPSRPVLKQKCSSLEK
                     LRLKEDKKLKRKIQKQEAKKLAQERMEEDLRESNPPKNEEPEETSDSAQRCQFLDDRI
                     LQCIKQNADKIKSVVLNTSTLLKELLSWKVLSTEDYTTCFSSKNFVHEAVDYVIGHLI
                     QEKNRVKTRIFLHVLSELKELDPKLAPWIQRLNSFGLDAIGPFFTRYGASLKELDFHV
                     VTVLWDEKYGHKLGSIEGKQLDYFFEPASAMEARCLIWLLEEHRDKFPALHSALDEFF
                     DIMDSRCTVLRKQDSDEMPFGCIKVKNKGKKKKPKDSKPMLVGSGAASVAPSSEAVTP
                     EDHRRNSDSAGPFAVPDHLRQDVEEFEALYDQHSSEYVVRNKKLWDINPKQKCSTLYD
                     YFSQLLEEHGPLDMSDRMFSEEYEFFPEETRQILEKAGGLKSFLLGCPRFVVIDNCIA
                     LKKVASRLKKKRKKKNMKAKVEDISKTGEYLRVKLPLNPTAREFQPDVKSEALSEDVK
                     SIPGPADSSTLAAEDLKAQLDSDSSSGSASEDSRLEVASPDSPTPLCEDASPSPTPAP
                     EEAKPTYWAQSHLVTGFCTYLPFQGFGITQRPAYINMVPSLSQFTSIYTPLANISSEY
                     PMQRSMPVVPSFVASNRADENAAAYFESPNLNTEHDSGDHMASETQILEDTLGVCVRS
                     QGSAADADPALSEPEGNSEHSGSSDSLWEASLENVSGTTDAPAAPSVAIQVSRSMVHQ
                     EVNTEPYEPFETQQGDLSQKEKECHLLREQLKVACENCEQIELRSSQEIKDLEEKLQR
                     HTEENKISKTELDWFLQDLDREIKKWQQEKKEIQERLKALKKKIKKVINTSEMPAQKN
                     DGFDKECEPHPDQSLGFSSALTDEKTKVEESVRKGKELYEESHQRAVAAEVSVLENWK
                     EREVCKLQGVASQSEAYLKSLKLMSSDSATYPDVEYDILSWESFLSTVREEIESKKSQ
                     FEEHIKAIKNGSRLSDLSSVQLSEVSFPGCSTIHPQFLSESSGHEDPGLVACVDSMTG
                     AVLNDPYMDSASGCPEEVPELSLGSPTHQPEVTQQLELKGASQVSPSEQSPEADEKLS
                     GQATRSSQSPKKPSNSIIEHLSVIFPCYTSTELAGFIKKVRNKTKNSFSGLTIEEIVE
                     KVTEHIVDEQKKKKPNPGKDKKTSEAHSAASVAKSSQSPPLAAAGPSARTKGQKKDDV
                     PAPDGNSCEICHEIFKSKNMRVLKCGHKFHKGCFKQWLKGQSTCPTCGSSDLLSEE"
ORIGIN      
        1 cgcggagcgt tcgctctgcg ggtctggttg acgtggaggg ccggaggcgt cggcagcccg
       61 cgtctgaggc tcgcgggctg cgggcccggg actgtgcagc atggatgact ttgctgaggg
      121 aggtctcagt ttggcagatg atatcttact ggaagattac ccttatgagg atgactgtat
      181 ctgtactcct gactttacca ctgacgatta tgttcgagta acccagcttt actatgaagg
      241 cgtgggtatg caatataaag attatgccca aagtgagaaa aatttagaat atgacatctg
      301 caatatctgg tgcagtaagc cactctccat cctgcaagat tactgtgatg ccattaagct
      361 gtacatcttc tggccacttc tttttcaaca tcaacacagt tctataatat caagattgca
      421 cccctgtgta gaagccatcc gttctcgtgc tgctgagata agtttgaaga aattacaaca
      481 tcttgagttg atggaagaca ttgtggattt ggcaaagaaa gttgcaaatg attcattcct
      541 tattgaaggc ttattgaaaa ttggttataa aatagaaaat aaaatcttgg caatggaaga
      601 tgctttaaat tggataaaat acacgggtga tgtaacaatt ctacctaaat taggatcagt
      661 tgacaattgc tggcccatgc taagtatttt ctttactgaa tataagtacc atattactag
      721 agttgtaact gaaaattgca acttgctaga agaatttaga aggcatagtt gcatgcagtg
      781 tgtgaagcaa ggagaactca tgaaaatgag aggaaatgaa gagttctcaa aggaaaagtt
      841 tgaaatagct gttatttatt acaccagagc cattgaatat agacctgaaa accatcttct
      901 ttatggtaac cgagctctct gttttcttcg tatggggcag tttagaaatg cacttagcga
      961 tggaaagagg gccattgttt tgaagaacac ctggccaaag gtcagcctcc aagacacaaa
     1021 ggaaaacaaa aatcacgaaa caatgaatca gaaaagccca gttctaattc agaagtgagt
     1081 ttacaagtag atttgaaaag cattttggag aaacagtttt caaaatcttc cagagctgca
     1141 caccaggatt ttgctaacat catgaaaatg ctaaggagct tgattcagga tgggtacacg
     1201 gccctgttag agcagcgctg ccgcagcgct gcccaggcct ttacagagct gctcaatggt
     1261 ttagaccctc agaaaataaa gcaattgaac ctggccatga ttaattatgt attagtagtc
     1321 tatggacttg ccgtttctct ccttggaata ggacgaccag aggagctgtc tgaagccgaa
     1381 aaccagttta agaggattat cgaacactat cccaatgagg ggctggactg cttggcctac
     1441 tgcggaatag gaaaagtgta tttgaaaaag aacagatttc tcgaagctct taatcacttt
     1501 gaaaaggcaa agactttaat tagtcgtctc cctggaattc taacttggcc cacaagtaat
     1561 gtgattattg aagaatctaa gccagaaaaa gtcaaggtga tgttagagaa gtttgttgaa
     1621 gaatgcaagt ttcccccagt gccagatgct gtttgttgct atcagaagtg ccgtggatat
     1681 tctaaaattc agatttactt aactgatcca gactttaagg gttttatacg aattagctgt
     1741 tgccaatact gtaaggtaga atttcatatg aactgctgga aaaagttaaa aacaacaact
     1801 tttaatgata aaattgacaa ggattttcta caaggaatct gtctcactcc cgattgtgag
     1861 ggaatcattt ctaagattat catctacagc agtggaggtc aagttaaatg tgaatttgaa
     1921 cacaaggtca taaaagaaaa ggttccttca agacctgttc tgaaacagaa atgttccagc
     1981 ctagagaagt taagactgaa agaagacaaa aaattgaaga gaaagatcca aaagcaagag
     2041 gcaaaaaagt tagcacaaga aagaatggaa gaggacttaa gagaaagcaa tccacctaaa
     2101 aatgaagagc cagaagaaac ctcagacagt gctcagcgtt gtcagtttct tgatgacaga
     2161 atcctgcagt gcataaagca gaatgctgac aagattaaat ctgttgtatt gaatacatcc
     2221 acgcttctca aagagctgct ctcttggaag gttctgagca cggaagacta tacaacatgc
     2281 ttttctagca aaaattttgt ccatgaagca gtggactatg ttatcggtca cttgatccaa
     2341 gagaagaaca gagtaaagac acggatattt ctgcatgttt tgagtgagct taaagagtta
     2401 gaccccaagt tggctccctg gatccagaga ctgaatagtt ttggcttgga tgccatagga
     2461 ccctttttca ctcggtacgg agcatctctc aaggagcttg atttccacgt cgtgactgtc
     2521 ctctgggatg agaagtacgg ccataaactg ggctctatag aaggaaagca gcttgattac
     2581 ttctttgagc cagcatcggc aatggaagca cgctgtttaa tatggcttct ggaagagcac
     2641 agggacaagt ttccggcctt gcacagtgcc ttagacgagt tctttgatat aatggacagc
     2701 cgatgcactg tactaaggaa gcaagacagc gatgaaatgc cgtttggttg tatcaaggta
     2761 aaaaacaaag gcaagaaaaa gaagccaaaa gattcaaagc caatgttagt gggatctgga
     2821 gctgcatcag tagcaccgag cagtgaggct gtcactccag aagaccatag gcgcaattca
     2881 gattctgcag gaccatttgc agtgcctgac caccttcggc aagatgtgga agaatttgaa
     2941 gctctttatg accagcacag cagcgagtat gttgtccgaa ataagaagct ctgggatatt
     3001 aaccccaaac agaaatgttc gactctgtat gattatttct ctcagttgtt ggaagagcac
     3061 ggccccttgg atatgagtga caggatgttc tctgaggaat atgagttctt ccctgaagaa
     3121 actcgacaga tactggagaa ggcaggaggg ctgaagtcgt tcctcctggg ctgtcctcga
     3181 tttgttgtga tcgacaactg cattgcattg aaaaaagttg cctcaagact caagaaaaaa
     3241 agaaagaaga aaaacatgaa agctaaagtt gaagacattt caaaaacagg agaatattta
     3301 cgagttaaac taccactaaa tccaactgct agggaatttc aaccagatgt aaagtctgaa
     3361 gcactgtctg aggatgtgaa gtccatacca ggacctgccg actcctcaac cctagctgcg
     3421 gaggatctga aggcccagct ggactctgat agctcttctg ggtcagcttc ggaggacagc
     3481 agactggaag tggcctctcc tgactctcct acaccactct gtgaggatgc ttctccttcc
     3541 cccacgccag ctcctgaaga agccaaacca acatactggg ctcaatcaca cttggtcaca
     3601 ggattctgca cataccttcc ttttcaagga tttggcatca cccagcgacc agcgtacatt
     3661 aacatggtac ctagcctgtc gcagttcact agcatttaca cacctttggc caacatttct
     3721 tctgagtatc caatgcaaag atccatgcca gtggtgccat cttttgtagc cagcaacaga
     3781 gcagatgaaa atgccgctgc atactttgag agtcctaatc tgaatactga gcacgactct
     3841 ggtgaccaca tggcctctga aacacagatc ctggaggata ctttgggagt gtgtgtcagg
     3901 tcccagggca gcgcagctga tgctgatcca gctctgagtg agcctgaggg aaacagcgaa
     3961 cacagtggga gctctgacag cctgtgggaa gcttctctag aaaatgtcag tggaacaaca
     4021 gatgctccag ctgctccatc ggttgccata caggtgtcta ggagcatggt acatcaggaa
     4081 gtcaacactg agccgtatga gccgtttgaa acacagcagg gggacctttc ccagaaggaa
     4141 aaggagtgcc acctactcag agagcagctg aaggtagcat gtgagaactg cgagcagata
     4201 gaactcagga gctcacaaga gatcaaggac ctggaggaaa agctgcaacg gcacacagag
     4261 gaaaacaaga tctcaaagac ggaattagac tggttcctcc aagatttgga cagagagatt
     4321 aaaaagtggc aacaagagaa aaaagaaatc caagaaagat taaaagccct gaagaaaaaa
     4381 attaaaaagg ttatcaatac cagtgaaatg cctgcccaga aaaatgatgg attcgataag
     4441 gaatgtgaac cacatccgga ccagtccctt ggattcagca gtgcactcac agatgagaag
     4501 acaaaagtag aagagtctgt caggaaaggg aaagagctct atgaagagag tcaccagaga
     4561 gccgtggctg cagaggtatc tgttcttgaa aactggaaag agcgagaagt gtgcaaacta
     4621 cagggtgtgg cgtcacaatc agaagcctat cttaaaagcc tcaagctgat gagcagtgat
     4681 tctgcaacgt atcccgatgt ggagtatgat atactttcat gggagtcatt tctttctact
     4741 gtaagagaag agatcgagag caaaaagtct cagtttgaag agcatattaa ggccattaag
     4801 aatggttctc gactcagtga cctttccagt gtgcagcttt ctgaggtttc atttcctggt
     4861 tgttcgacga tccatcctca gttcctctct gagtcttcag gccatgagga tcccggactg
     4921 gtggcttgtg tagacagcat gactggagca gtcctcaatg atccttacat ggactctgct
     4981 agtggctgcc cagaggaggt tccagaactg tcgctgggat cacccaccca tcagccagaa
     5041 gttactcaac agcttgagct caagggggct agccaggtgt ctccatcaga acagagccct
     5101 gaggccgacg agaaactatc tggacaggct actcggtcaa gccagtctcc aaaaaagcct
     5161 tccaacagta ttattgaaca cctgtcagtg atattcccat gttataccag cactgagctt
     5221 gctgggttta ttaagaaagt tagaaacaaa accaagaact cattctcggg attaactatt
     5281 gaggagattg tggagaaagt gacagaacac attgtcgatg agcaaaagaa gaaaaagcca
     5341 aatccaggaa aagacaagaa gacatctgag gctcattcgg ctgcctctgt ggccaagtcc
     5401 tcccagagtc cacccttggc agctgctgga ccatcagcta gaaccaaagg ccagaaaaaa
     5461 gatgatgtcc ctgcaccaga tggaaattcc tgtgagatat gccatgaaat attcaagtca
     5521 aaaaacatgc gtgtgctaaa atgtgggcac aagtttcaca aagggtgctt taagcagtgg
     5581 ctgaaagggc agagcacgtg ccccacctgt ggcagcagtg acctgctgtc agaagagtaa
     5641 ctgttgcacc atcgtcacag acccagccca ggagaagatg ggaacctcct tcctgttgct
     5701 gtaggtagtc actcctcact aatgcaccat gcacttcatg agttaaagaa caacagtgtc
     5761 ctgttaccag tgtaaaaaca gcaaacatgg aagctctcac actgtgcatc acaaagctaa
     5821 caaatggaaa tctgaattgc agtctgtccc aggttccagg caggtgacag ccatgtgtgt
     5881 ctgcaatgct gtcaccatgg tcctgcactg tcgtggctgc tgcaggatac tctgagatga
     5941 gcaggttctt tggaaagaac tgctgagctc ctcaaagcag tgctgagatt gtaaaggctc
     6001 tcagcctcct cagttcctca tgtggcactg tagcatcccc gtcataaatt tttaaagtgc
     6061 ttatgattca attaatctac attttggtaa tcaattataa aatacttttt aaattagtat
     6121 tggctatttt ttttttttac cctgggaaga tgctgtctgc tcacaggagt cccacacttg
     6181 gcacttacac taaggttacc atgtaagtct catgagtcag cagtgcttgg aagtgcacag
     6241 ctggctagtg ctgaaaacag gacatagtgc ccagcgcagg gcagccaccc tcaccctcct
     6301 tccttatcct tccaccagaa gagaaatgta ccacagtcct gatgtgttgg tgttaacatt
     6361 gttctgtttg acttttgtgt aaagtaatgc atgcaatctt gtaatgtggc ctgaaaacaa
     6421 gctaactgta ttagaaacta ttcaaaaact aggtattttt agtgacctgt aggcagtggc
     6481 aaatacagac atgtgaacct tgaatacatt acatttctct caaacacaaa gaaacaaaca
     6541 aaaaactttt ccagcgtgtt ctctgctgcc ctggagatgc cgtcaccttc cacccgtgtc
     6601 tgtgtgagtt gtggtgtctt agtgacttag tatgtagctc actccttatt ctgagacatt
     6661 gtctgtggtg tccctgaaac atggtgtcca tgctgtaaca gtggagtgca gtacatgcct
     6721 gagtacacac agcagcttat agtatctgtc gggtacaaag aagagtagct gttgagacag
     6781 agagctgtgc ttcgtgtcag agcctgtgaa catgccttac acttgtccag taactgtcaa
     6841 taaagaacat tataaaaggt ca
//
