LOCUS       XM_036159877            6618 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus tetratricopeptide repeat domain 3 (Ttc3),
            transcript variant X25, mRNA.
ACCESSION   XM_036159877
VERSION     XM_036159877.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6618
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..6618
                     /gene="Ttc3"
                     /gene_synonym="2610202A04Rik; D16Ium21; D16Ium21e;
                     mKIAA4119; TPRD"
                     /note="tetratricopeptide repeat domain 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 mRNAs, 77 ESTs, 12911 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:22129"
                     /db_xref="MGI:MGI:1276539"
     CDS             660..5396
                     /gene="Ttc3"
                     /gene_synonym="2610202A04Rik; D16Ium21; D16Ium21e;
                     mKIAA4119; TPRD"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X13"
                     /protein_id="XP_036015770.1"
                     /db_xref="GeneID:22129"
                     /db_xref="MGI:MGI:1276539"
                     /translation="MANGGDQNQKVADEALKGDDCDCHPEFLPPPSQPPRHKGKQKSR
                     NNESEKPSSNSEVSLQVDLKSILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYTALLE
                     QRCRSAAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAVSLLGIGRPEELSEAENQ
                     FKRIIEHYPNEGLDCLAYCGIGKVYLKKNRFLEALNHFEKAKTLISRLPGILTWPTSN
                     VIIEESKPEKVKVMLEKFVEECKFPPVPDAVCCYQKCRGYSKIQIYLTDPDFKGFIRI
                     SCCQYCKVEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGIISKIIIYSSGGQVK
                     CEFEHKVIKEKVPSRPVLKQKCSSLEKLRLKEDKKLKRKIQKQEAKKLAQERMEEDLR
                     ESNPPKNEEPEETSDSAQRCQFLDDRILQCIKQNADKIKSVVLNTSTLLKELLSWKVL
                     STEDYTTCFSSKNFVHEAVDYVIGHLIQEKNRVKTRIFLHVLSELKELDPKLAPWIQR
                     LNSFGLDAIGPFFTRYGASLKELDFHVVTVLWDEKYGHKLGSIEGKQLDYFFEPASAM
                     EARCLIWLLEEHRDKFPALHSALDEFFDIMDSRCTVLRKQDSDEMPFGCIKVKNKGKK
                     KKPKDSKPMLVGSGAASVAPSSEAVTPEDHSRRNSDSAGPFAVPDHLRQDVEEFEALY
                     DQHSSEYVVRNKKLWDINPKQKCSTLYDYFSQLLEEHGPLDMSDRMFSEEYEFFPEET
                     RQILEKAGGLKSFLLGCPRFVVIDNCIALKKVASRLKKKRKKKNMKAKVEDISKTGEY
                     LRVKLPLNPTAREFQPDVKSEALSEDVKSIPGPADSSTLAAEDLKAQLDSDSSSGSAS
                     EDSRLEVASPDSPTPLCEDASPSPTPAPEEAKPTYWAQSHLVTGFCTYLPFQGFGITQ
                     RPAYINMVPSLSQFTSIYTPLANISSEYPMQRSMPVVPSFVASNRADENAAAYFESPN
                     LNTEHDSGDHMASETQILEDTLGVCVRSQGSAADADPALSEPEGNSEHSGSSDSLWEA
                     SLENVSGTTDAPAAPSVAIQVSRSMVHQEVNTEPYEPFETQQGDLSQKEKECHLLREQ
                     LKVACENCEQIELRSSQEIKDLEEKLQRHTEENKISKTELDWFLQDLDREIKKWQQEK
                     KEIQERLKALKKKIKKVINTSEMPAQKNDGFDKECEPHPDQSLGFSSALTDEKTKVEE
                     SVRKGKELYEESHQRAVAAEVSVLENWKEREVCKLQGVASQSEAYLKSLKLMSSDSAT
                     YPDVEYDILSWESFLSTVREEIESKKSQFEEHIKAIKNGSRLSDLSSVQLSEVSFPGC
                     STIHPQFLSESSGHEDPGLVACVDSMTGAVLNDPYMDSASGCPEEVPELSLGSPTHQP
                     EVTQQLELKGASQVSPSEQSPEADEKLSGQATRSSQSPKKPSNSIIEHLSVIFPCYTS
                     TELAGFIKKVRNKTKNSFSGLTIEEIVEKVTEHIVDEQKKKKPNPGKDKKTSEAHSAA
                     SVAKSSQSPPLAAAGPSARTKGQKKDDVPAPDGNSCEICHEIFKSKNMRVLKCGHKFH
                     KGCFKQWLKGQSTCPTCGSSDLLSEE"
ORIGIN      
        1 gccacgtgac ccgcccgcct caggagccgc ggagcgttcg ctctgcgggt ctggttgacg
       61 tggagggccg gaggcgtcgg cagcccgcgt ctgaggctcg cgggctgcgg gcccggaaat
      121 gcacttagcg atggaaagag ggccattgtt ttgaagaaca cctggccaaa gggtcattat
      181 cgttattgtg atgctctttg tatgctgggg gaatatgact gggccctgca agcaaacata
      241 aaagctcaaa aactctgtaa aaatgaccct gagggaatca aggatctaat tcagcagcat
      301 gtaaagttac aaaaacaaat agaagaccta caaggtattt cacctaagat tctttcggtt
      361 acagtggaat tccctttaag actctcgaga gtggatttcg tggattaata aggaccgcac
      421 caggcctcgg gtggtgtgta cttgtgcttt gattggtcaa gtcactcaag tgttctgttc
      481 ctgtctgtgt gaagctatga tagtgttatg ttcaactagg tcggacatca aataagaatc
      541 caattaaagc tttttatgaa agcagggctt acatacctag aaactcatca gcacctgctt
      601 ttaggacatc acttaacttt gtggaaacag aaagaggttt cagaaaaact aagtacaaaa
      661 tggcaaatgg tggcgatcag aatcaaaagg tggcagatga ggctttgaag ggggacgatt
      721 gtgactgtca tcctgaattt ctgccacctc caagtcagcc tccaagacac aaaggaaaac
      781 aaaaatcacg aaacaatgaa tcagaaaagc ccagttctaa ttcagaagtg agtttacaag
      841 tagatttgaa aagcattttg gagaaacagt tttcaaaatc ttccagagct gcacaccagg
      901 attttgctaa catcatgaaa atgctaagga gcttgattca ggatgggtac acggccctgt
      961 tagagcagcg ctgccgcagc gctgcccagg cctttacaga gctgctcaat ggtttagacc
     1021 ctcagaaaat aaagcaattg aacctggcca tgattaatta tgtattagta gtctatggac
     1081 ttgccgtttc tctccttgga ataggacgac cagaggagct gtctgaagcc gaaaaccagt
     1141 ttaagaggat tatcgaacac tatcccaatg aggggctgga ctgcttggcc tactgcggaa
     1201 taggaaaagt gtatttgaaa aagaacagat ttctcgaagc tcttaatcac tttgaaaagg
     1261 caaagacttt aattagtcgt ctccctggaa ttctaacttg gcccacaagt aatgtgatta
     1321 ttgaagaatc taagccagaa aaagtcaagg tgatgttaga gaagtttgtt gaagaatgca
     1381 agtttccccc agtgccagat gctgtttgtt gctatcagaa gtgccgtgga tattctaaaa
     1441 ttcagattta cttaactgat ccagacttta agggttttat acgaattagc tgttgccaat
     1501 actgtaaggt agaatttcat atgaactgct ggaaaaagtt aaaaacaaca acttttaatg
     1561 ataaaattga caaggatttt ctacaaggaa tctgtctcac tcccgattgt gagggaatca
     1621 tttctaagat tatcatctac agcagtggag gtcaagttaa atgtgaattt gaacacaagg
     1681 tcataaaaga aaaggttcct tcaagacctg ttctgaaaca gaaatgttcc agcctagaga
     1741 agttaagact gaaagaagac aaaaaattga agagaaagat ccaaaagcaa gaggcaaaaa
     1801 agttagcaca agaaagaatg gaagaggact taagagaaag caatccacct aaaaatgaag
     1861 agccagaaga aacctcagac agtgctcagc gttgtcagtt tcttgatgac agaatcctgc
     1921 agtgcataaa gcagaatgct gacaagatta aatctgttgt attgaataca tccacgcttc
     1981 tcaaagagct gctctcttgg aaggttctga gcacggaaga ctatacaaca tgcttttcta
     2041 gcaaaaattt tgtccatgaa gcagtggact atgttatcgg tcacttgatc caagagaaga
     2101 acagagtaaa gacacggata tttctgcatg ttttgagtga gcttaaagag ttagacccca
     2161 agttggctcc ctggatccag agactgaata gttttggctt ggatgccata ggaccctttt
     2221 tcactcggta cggagcatct ctcaaggagc ttgatttcca cgtcgtgact gtcctctggg
     2281 atgagaagta cggccataaa ctgggctcta tagaaggaaa gcagcttgat tacttctttg
     2341 agccagcatc ggcaatggaa gcacgctgtt taatatggct tctggaagag cacagggaca
     2401 agtttccggc cttgcacagt gccttagacg agttctttga tataatggac agccgatgca
     2461 ctgtactaag gaagcaagac agcgatgaaa tgccgtttgg ttgtatcaag gtaaaaaaca
     2521 aaggcaagaa aaagaagcca aaagattcaa agccaatgtt agtgggatct ggagctgcat
     2581 cagtagcacc gagcagtgag gctgtcactc cagaagacca tagcaggcgc aattcagatt
     2641 ctgcaggacc atttgcagtg cctgaccacc ttcggcaaga tgtggaagaa tttgaagctc
     2701 tttatgacca gcacagcagc gagtatgttg tccgaaataa gaagctctgg gatattaacc
     2761 ccaaacagaa atgttcgact ctgtatgatt atttctctca gttgttggaa gagcacggcc
     2821 ccttggatat gagtgacagg atgttctctg aggaatatga gttcttccct gaagaaactc
     2881 gacagatact ggagaaggca ggagggctga agtcgttcct cctgggctgt cctcgatttg
     2941 ttgtgatcga caactgcatt gcattgaaaa aagttgcctc aagactcaag aaaaaaagaa
     3001 agaagaaaaa catgaaagct aaagttgaag acatttcaaa aacaggagaa tatttacgag
     3061 ttaaactacc actaaatcca actgctaggg aatttcaacc agatgtaaag tctgaagcac
     3121 tgtctgagga tgtgaagtcc ataccaggac ctgccgactc ctcaacccta gctgcggagg
     3181 atctgaaggc ccagctggac tctgatagct cttctgggtc agcttcggag gacagcagac
     3241 tggaagtggc ctctcctgac tctcctacac cactctgtga ggatgcttct ccttccccca
     3301 cgccagctcc tgaagaagcc aaaccaacat actgggctca atcacacttg gtcacaggat
     3361 tctgcacata ccttcctttt caaggatttg gcatcaccca gcgaccagcg tacattaaca
     3421 tggtacctag cctgtcgcag ttcactagca tttacacacc tttggccaac atttcttctg
     3481 agtatccaat gcaaagatcc atgccagtgg tgccatcttt tgtagccagc aacagagcag
     3541 atgaaaatgc cgctgcatac tttgagagtc ctaatctgaa tactgagcac gactctggtg
     3601 accacatggc ctctgaaaca cagatcctgg aggatacttt gggagtgtgt gtcaggtccc
     3661 agggcagcgc agctgatgct gatccagctc tgagtgagcc tgagggaaac agcgaacaca
     3721 gtgggagctc tgacagcctg tgggaagctt ctctagaaaa tgtcagtgga acaacagatg
     3781 ctccagctgc tccatcggtt gccatacagg tgtctaggag catggtacat caggaagtca
     3841 acactgagcc gtatgagccg tttgaaacac agcaggggga cctttcccag aaggaaaagg
     3901 agtgccacct actcagagag cagctgaagg tagcatgtga gaactgcgag cagatagaac
     3961 tcaggagctc acaagagatc aaggacctgg aggaaaagct gcaacggcac acagaggaaa
     4021 acaagatctc aaagacggaa ttagactggt tcctccaaga tttggacaga gagattaaaa
     4081 agtggcaaca agagaaaaaa gaaatccaag aaagattaaa agccctgaag aaaaaaatta
     4141 aaaaggttat caataccagt gaaatgcctg cccagaaaaa tgatggattc gataaggaat
     4201 gtgaaccaca tccggaccag tcccttggat tcagcagtgc actcacagat gagaagacaa
     4261 aagtagaaga gtctgtcagg aaagggaaag agctctatga agagagtcac cagagagccg
     4321 tggctgcaga ggtatctgtt cttgaaaact ggaaagagcg agaagtgtgc aaactacagg
     4381 gtgtggcgtc acaatcagaa gcctatctta aaagcctcaa gctgatgagc agtgattctg
     4441 caacgtatcc cgatgtggag tatgatatac tttcatggga gtcatttctt tctactgtaa
     4501 gagaagagat cgagagcaaa aagtctcagt ttgaagagca tattaaggcc attaagaatg
     4561 gttctcgact cagtgacctt tccagtgtgc agctttctga ggtttcattt cctggttgtt
     4621 cgacgatcca tcctcagttc ctctctgagt cttcaggcca tgaggatccc ggactggtgg
     4681 cttgtgtaga cagcatgact ggagcagtcc tcaatgatcc ttacatggac tctgctagtg
     4741 gctgcccaga ggaggttcca gaactgtcgc tgggatcacc cacccatcag ccagaagtta
     4801 ctcaacagct tgagctcaag ggggctagcc aggtgtctcc atcagaacag agccctgagg
     4861 ccgacgagaa actatctgga caggctactc ggtcaagcca gtctccaaaa aagccttcca
     4921 acagtattat tgaacacctg tcagtgatat tcccatgtta taccagcact gagcttgctg
     4981 ggtttattaa gaaagttaga aacaaaacca agaactcatt ctcgggatta actattgagg
     5041 agattgtgga gaaagtgaca gaacacattg tcgatgagca aaagaagaaa aagccaaatc
     5101 caggaaaaga caagaagaca tctgaggctc attcggctgc ctctgtggcc aagtcctccc
     5161 agagtccacc cttggcagct gctggaccat cagctagaac caaaggccag aaaaaagatg
     5221 atgtccctgc accagatgga aattcctgtg agatatgcca tgaaatattc aagtcaaaaa
     5281 acatgcgtgt gctaaaatgt gggcacaagt ttcacaaagg gtgctttaag cagtggctga
     5341 aagggcagag cacgtgcccc acctgtggca gcagtgacct gctgtcagaa gagtaactgt
     5401 tgcaccatcg tcacagaccc agcccaggag aagatgggaa cctccttcct gttgctgtag
     5461 gtagtcactc ctcactaatg caccatgcac ttcatgagtt aaagaacaac agtgtcctgt
     5521 taccagtgta aaaacagcaa acatggaagc tctcacactg tgcatcacaa agctaacaaa
     5581 tggaaatctg aattgcagtc tgtcccaggt tccaggcagg tgacagccat gtgtgtctgc
     5641 aatgctgtca ccatggtcct gcactgtcgt ggctgctgca ggatactctg agatgagcag
     5701 gttctttgga aagaactgct gagctcctca aagcagtgct gagattgtaa aggctctcag
     5761 cctcctcagt tcctcatgtg gcactgtagc atccccgtca taaattttta aagtgcttat
     5821 gattcaatta atctacattt tggtaatcaa ttataaaata ctttttaaat tagtattggc
     5881 tatttttttt ttttaccctg ggaagatgct gtctgctcac aggagtccca cacttggcac
     5941 ttacactaag gttaccatgt aagtctcatg agtcagcagt gcttggaagt gcacagctgg
     6001 ctagtgctga aaacaggaca tagtgcccag cgcagggcag ccaccctcac cctccttcct
     6061 tatccttcca ccagaagaga aatgtaccac agtcctgatg tgttggtgtt aacattgttc
     6121 tgtttgactt ttgtgtaaag taatgcatgc aatcttgtaa tgtggcctga aaacaagcta
     6181 actgtattag aaactattca aaaactaggt atttttagtg acctgtaggc agtggcaaat
     6241 acagacatgt gaaccttgaa tacattacat ttctctcaaa cacaaagaaa caaacaaaaa
     6301 acttttccag cgtgttctct gctgccctgg agatgccgtc accttccacc cgtgtctgtg
     6361 tgagttgtgg tgtcttagtg acttagtatg tagctcactc cttattctga gacattgtct
     6421 gtggtgtccc tgaaacatgg tgtccatgct gtaacagtgg agtgcagtac atgcctgagt
     6481 acacacagca gcttatagta tctgtcgggt acaaagaaga gtagctgttg agacagagag
     6541 ctgtgcttcg tgtcagagcc tgtgaacatg ccttacactt gtccagtaac tgtcaataaa
     6601 gaacattata aaaggtca
//
