LOCUS       XM_006523000            6132 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus tetratricopeptide repeat domain 3 (Ttc3),
            transcript variant X37, mRNA.
ACCESSION   XM_006523000
VERSION     XM_006523000.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006523000.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6132
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..6132
                     /gene="Ttc3"
                     /gene_synonym="2610202A04Rik; D16Ium21; D16Ium21e;
                     mKIAA4119; TPRD"
                     /note="tetratricopeptide repeat domain 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 mRNAs, 85 ESTs, 13207 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:22129"
                     /db_xref="MGI:MGI:1276539"
     CDS             429..4910
                     /gene="Ttc3"
                     /gene_synonym="2610202A04Rik; D16Ium21; D16Ium21e;
                     mKIAA4119; TPRD"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X15"
                     /protein_id="XP_006523063.1"
                     /db_xref="GeneID:22129"
                     /db_xref="MGI:MGI:1276539"
                     /translation="MKMLRSLIQDGYTALLEQRCRSAAQAFTELLNGLDPQKIKQLNL
                     AMINYVLVVYGLAVSLLGIGRPEELSEAENQFKRIIEHYPNEGLDCLAYCGIGKVYLK
                     KNRFLEALNHFEKAKTLISRLPGILTWPTSNVIIEESKPEKVKVMLEKFVEECKFPPV
                     PDAVCCYQKCRGYSKIQIYLTDPDFKGFIRISCCQYCKVEFHMNCWKKLKTTTFNDKI
                     DKDFLQGICLTPDCEGIISKIIIYSSGGQVKCEFEHKVIKEKVPSRPVLKQKCSSLEK
                     LRLKEDKKLKRKIQKQEAKKLAQERMEEDLRESNPPKNEEPEETSDSAQRCQFLDDRI
                     LQCIKQNADKIKSVVLNTSTLLKELLSWKVLSTEDYTTCFSSKNFVHEAVDYVIGHLI
                     QEKNRVKTRIFLHVLSELKELDPKLAPWIQRLNSFGLDAIGPFFTRYGASLKELDFHV
                     VTVLWDEKYGHKLGSIEGKQLDYFFEPASAMEARCLIWLLEEHRDKFPALHSALDEFF
                     DIMDSRCTVLRKQDSDEMPFGCIKVKNKGKKKKPKDSKPMLVGSGAASVAPSSEAVTP
                     EDHSRRNSDSAGPFAVPDHLRQDVEEFEALYDQHSSEYVVRNKKLWDINPKQKCSTLY
                     DYFSQLLEEHGPLDMSDRMFSEEYEFFPEETRQILEKAGGLKSFLLGCPRFVVIDNCI
                     ALKKVASRLKKKRKKKNMKAKVEDISKTGEYLRVKLPLNPTAREFQPDVKSEALSEDV
                     KSIPGPADSSTLAAEDLKAQLDSDSSSGSASEDSRLEVASPDSPTPLCEDASPSPTPA
                     PEEAKPTYWAQSHLVTGFCTYLPFQGFGITQRPAYINMVPSLSQFTSIYTPLANISSE
                     YPMQRSMPVVPSFVASNRADENAAAYFESPNLNTEHDSGDHMASETQILEDTLGVCVR
                     SQGSAADADPALSEPEGNSEHSGSSDSLWEASLENVSGTTDAPAAPSVAIQVSRSMVH
                     QEVNTEPYEPFETQQGDLSQKEKECHLLREQLKVACENCEQIELRSSQEIKDLEEKLQ
                     RHTEENKISKTELDWFLQDLDREIKKWQQEKKEIQERLKALKKKIKKVINTSEMPAQK
                     NDGFDKECEPHPDQSLGFSSALTDEKTKVEESVRKGKELYEESHQRAVAAEVSVLENW
                     KEREVCKLQGVASQSEAYLKSLKLMSSDSATYPDVEYDILSWESFLSTVREEIESKKS
                     QFEEHIKAIKNGSRLSDLSSVQLSEVSFPGCSTIHPQFLSESSGHEDPGLVACVDSMT
                     GAVLNDPYMDSASGCPEEVPELSLGSPTHQPEVTQQLELKGASQVSPSEQSPEADEKL
                     SGQATRSSQSPKKPSNSIIEHLSVIFPCYTSTELAGFIKKVRNKTKNSFSGLTIEEIV
                     EKVTEHIVDEQKKKKPNPGKDKKTSEAHSAASVAKSSQSPPLAAAGPSARTKGQKKDD
                     VPAPDGNSCEICHEIFKSKNMRVLKCGHKFHKGCFKQWLKGQSTCPTCGSSDLLSEE"
ORIGIN      
        1 ggcgcaccgc gaccgcagcg agggggctag cacggtctca ccacccaccc caccgagctg
       61 agggggcgac gcggcgactg cgcatgcgca ccctaagcca cgtgacccgc ccgcctcagg
      121 agccgcggag cgttcgctct gcgggtctgg ttgacgtgga gggccggagg cgtcggcagc
      181 ccgcgtctga ggctcgcggg ctgcgggccc ggaaatgcac ttagcgatgg aaagagggcc
      241 attgttttga agaacacctg gccaaaggtc agcctccaag acacaaagga aaacaaaaat
      301 cacgaaacaa tgaatcagaa aagcccagtt ctaattcaga agtgagttta caagtagatt
      361 tgaaaagcat tttggagaaa cagttttcaa aatcttccag agctgcacac caggattttg
      421 ctaacatcat gaaaatgcta aggagcttga ttcaggatgg gtacacggcc ctgttagagc
      481 agcgctgccg cagcgctgcc caggccttta cagagctgct caatggttta gaccctcaga
      541 aaataaagca attgaacctg gccatgatta attatgtatt agtagtctat ggacttgccg
      601 tttctctcct tggaatagga cgaccagagg agctgtctga agccgaaaac cagtttaaga
      661 ggattatcga acactatccc aatgaggggc tggactgctt ggcctactgc ggaataggaa
      721 aagtgtattt gaaaaagaac agatttctcg aagctcttaa tcactttgaa aaggcaaaga
      781 ctttaattag tcgtctccct ggaattctaa cttggcccac aagtaatgtg attattgaag
      841 aatctaagcc agaaaaagtc aaggtgatgt tagagaagtt tgttgaagaa tgcaagtttc
      901 ccccagtgcc agatgctgtt tgttgctatc agaagtgccg tggatattct aaaattcaga
      961 tttacttaac tgatccagac tttaagggtt ttatacgaat tagctgttgc caatactgta
     1021 aggtagaatt tcatatgaac tgctggaaaa agttaaaaac aacaactttt aatgataaaa
     1081 ttgacaagga ttttctacaa ggaatctgtc tcactcccga ttgtgaggga atcatttcta
     1141 agattatcat ctacagcagt ggaggtcaag ttaaatgtga atttgaacac aaggtcataa
     1201 aagaaaaggt tccttcaaga cctgttctga aacagaaatg ttccagccta gagaagttaa
     1261 gactgaaaga agacaaaaaa ttgaagagaa agatccaaaa gcaagaggca aaaaagttag
     1321 cacaagaaag aatggaagag gacttaagag aaagcaatcc acctaaaaat gaagagccag
     1381 aagaaacctc agacagtgct cagcgttgtc agtttcttga tgacagaatc ctgcagtgca
     1441 taaagcagaa tgctgacaag attaaatctg ttgtattgaa tacatccacg cttctcaaag
     1501 agctgctctc ttggaaggtt ctgagcacgg aagactatac aacatgcttt tctagcaaaa
     1561 attttgtcca tgaagcagtg gactatgtta tcggtcactt gatccaagag aagaacagag
     1621 taaagacacg gatatttctg catgttttga gtgagcttaa agagttagac cccaagttgg
     1681 ctccctggat ccagagactg aatagttttg gcttggatgc cataggaccc tttttcactc
     1741 ggtacggagc atctctcaag gagcttgatt tccacgtcgt gactgtcctc tgggatgaga
     1801 agtacggcca taaactgggc tctatagaag gaaagcagct tgattacttc tttgagccag
     1861 catcggcaat ggaagcacgc tgtttaatat ggcttctgga agagcacagg gacaagtttc
     1921 cggccttgca cagtgcctta gacgagttct ttgatataat ggacagccga tgcactgtac
     1981 taaggaagca agacagcgat gaaatgccgt ttggttgtat caaggtaaaa aacaaaggca
     2041 agaaaaagaa gccaaaagat tcaaagccaa tgttagtggg atctggagct gcatcagtag
     2101 caccgagcag tgaggctgtc actccagaag accatagcag gcgcaattca gattctgcag
     2161 gaccatttgc agtgcctgac caccttcggc aagatgtgga agaatttgaa gctctttatg
     2221 accagcacag cagcgagtat gttgtccgaa ataagaagct ctgggatatt aaccccaaac
     2281 agaaatgttc gactctgtat gattatttct ctcagttgtt ggaagagcac ggccccttgg
     2341 atatgagtga caggatgttc tctgaggaat atgagttctt ccctgaagaa actcgacaga
     2401 tactggagaa ggcaggaggg ctgaagtcgt tcctcctggg ctgtcctcga tttgttgtga
     2461 tcgacaactg cattgcattg aaaaaagttg cctcaagact caagaaaaaa agaaagaaga
     2521 aaaacatgaa agctaaagtt gaagacattt caaaaacagg agaatattta cgagttaaac
     2581 taccactaaa tccaactgct agggaatttc aaccagatgt aaagtctgaa gcactgtctg
     2641 aggatgtgaa gtccatacca ggacctgccg actcctcaac cctagctgcg gaggatctga
     2701 aggcccagct ggactctgat agctcttctg ggtcagcttc ggaggacagc agactggaag
     2761 tggcctctcc tgactctcct acaccactct gtgaggatgc ttctccttcc cccacgccag
     2821 ctcctgaaga agccaaacca acatactggg ctcaatcaca cttggtcaca ggattctgca
     2881 cataccttcc ttttcaagga tttggcatca cccagcgacc agcgtacatt aacatggtac
     2941 ctagcctgtc gcagttcact agcatttaca cacctttggc caacatttct tctgagtatc
     3001 caatgcaaag atccatgcca gtggtgccat cttttgtagc cagcaacaga gcagatgaaa
     3061 atgccgctgc atactttgag agtcctaatc tgaatactga gcacgactct ggtgaccaca
     3121 tggcctctga aacacagatc ctggaggata ctttgggagt gtgtgtcagg tcccagggca
     3181 gcgcagctga tgctgatcca gctctgagtg agcctgaggg aaacagcgaa cacagtggga
     3241 gctctgacag cctgtgggaa gcttctctag aaaatgtcag tggaacaaca gatgctccag
     3301 ctgctccatc ggttgccata caggtgtcta ggagcatggt acatcaggaa gtcaacactg
     3361 agccgtatga gccgtttgaa acacagcagg gggacctttc ccagaaggaa aaggagtgcc
     3421 acctactcag agagcagctg aaggtagcat gtgagaactg cgagcagata gaactcagga
     3481 gctcacaaga gatcaaggac ctggaggaaa agctgcaacg gcacacagag gaaaacaaga
     3541 tctcaaagac ggaattagac tggttcctcc aagatttgga cagagagatt aaaaagtggc
     3601 aacaagagaa aaaagaaatc caagaaagat taaaagccct gaagaaaaaa attaaaaagg
     3661 ttatcaatac cagtgaaatg cctgcccaga aaaatgatgg attcgataag gaatgtgaac
     3721 cacatccgga ccagtccctt ggattcagca gtgcactcac agatgagaag acaaaagtag
     3781 aagagtctgt caggaaaggg aaagagctct atgaagagag tcaccagaga gccgtggctg
     3841 cagaggtatc tgttcttgaa aactggaaag agcgagaagt gtgcaaacta cagggtgtgg
     3901 cgtcacaatc agaagcctat cttaaaagcc tcaagctgat gagcagtgat tctgcaacgt
     3961 atcccgatgt ggagtatgat atactttcat gggagtcatt tctttctact gtaagagaag
     4021 agatcgagag caaaaagtct cagtttgaag agcatattaa ggccattaag aatggttctc
     4081 gactcagtga cctttccagt gtgcagcttt ctgaggtttc atttcctggt tgttcgacga
     4141 tccatcctca gttcctctct gagtcttcag gccatgagga tcccggactg gtggcttgtg
     4201 tagacagcat gactggagca gtcctcaatg atccttacat ggactctgct agtggctgcc
     4261 cagaggaggt tccagaactg tcgctgggat cacccaccca tcagccagaa gttactcaac
     4321 agcttgagct caagggggct agccaggtgt ctccatcaga acagagccct gaggccgacg
     4381 agaaactatc tggacaggct actcggtcaa gccagtctcc aaaaaagcct tccaacagta
     4441 ttattgaaca cctgtcagtg atattcccat gttataccag cactgagctt gctgggttta
     4501 ttaagaaagt tagaaacaaa accaagaact cattctcggg attaactatt gaggagattg
     4561 tggagaaagt gacagaacac attgtcgatg agcaaaagaa gaaaaagcca aatccaggaa
     4621 aagacaagaa gacatctgag gctcattcgg ctgcctctgt ggccaagtcc tcccagagtc
     4681 cacccttggc agctgctgga ccatcagcta gaaccaaagg ccagaaaaaa gatgatgtcc
     4741 ctgcaccaga tggaaattcc tgtgagatat gccatgaaat attcaagtca aaaaacatgc
     4801 gtgtgctaaa atgtgggcac aagtttcaca aagggtgctt taagcagtgg ctgaaagggc
     4861 agagcacgtg ccccacctgt ggcagcagtg acctgctgtc agaagagtaa ctgttgcacc
     4921 atcgtcacag acccagccca ggagaagatg ggaacctcct tcctgttgct gtaggtagtc
     4981 actcctcact aatgcaccat gcacttcatg agttaaagaa caacagtgtc ctgttaccag
     5041 tgtaaaaaca gcaaacatgg aagctctcac actgtgcatc acaaagctaa caaatggaaa
     5101 tctgaattgc agtctgtccc aggttccagg caggtgacag ccatgtgtgt ctgcaatgct
     5161 gtcaccatgg tcctgcactg tcgtggctgc tgcaggatac tctgagatga gcaggttctt
     5221 tggaaagaac tgctgagctc ctcaaagcag tgctgagatt gtaaaggctc tcagcctcct
     5281 cagttcctca tgtggcactg tagcatcccc gtcataaatt tttaaagtgc ttatgattca
     5341 attaatctac attttggtaa tcaattataa aatacttttt aaattagtat tggctatttt
     5401 ttttttttac cctgggaaga tgctgtctgc tcacaggagt cccacacttg gcacttacac
     5461 taaggttacc atgtaagtct catgagtcag cagtgcttgg aagtgcacag ctggctagtg
     5521 ctgaaaacag gacatagtgc ccagcgcagg gcagccaccc tcaccctcct tccttatcct
     5581 tccaccagaa gagaaatgta ccacagtcct gatgtgttgg tgttaacatt gttctgtttg
     5641 acttttgtgt aaagtaatgc atgcaatctt gtaatgtggc ctgaaaacaa gctaactgta
     5701 ttagaaacta ttcaaaaact aggtattttt agtgacctgt aggcagtggc aaatacagac
     5761 atgtgaacct tgaatacatt acatttctct caaacacaaa gaaacaaaca aaaaactttt
     5821 ccagcgtgtt ctctgctgcc ctggagatgc cgtcaccttc cacccgtgtc tgtgtgagtt
     5881 gtggtgtctt agtgacttag tatgtagctc actccttatt ctgagacatt gtctgtggtg
     5941 tccctgaaac atggtgtcca tgctgtaaca gtggagtgca gtacatgcct gagtacacac
     6001 agcagcttat agtatctgtc gggtacaaag aagagtagct gttgagacag agagctgtgc
     6061 ttcgtgtcag agcctgtgaa catgccttac acttgtccag taactgtcaa taaagaacat
     6121 tataaaaggt ca
//
