LOCUS       NM_152817               2839 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 27 (Ttc27), mRNA.
ACCESSION   NM_152817
VERSION     NM_152817.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2839)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK030942.1, AK049324.1 and AI118251.1.
            
            On Jan 9, 2008 this sequence version replaced NM_152817.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK012131.1, AK030942.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1216              AK030942.1         2-1217
            1217-2629           AK049324.1         1218-2630
            2630-2839           AI118251.1         1-210               c
FEATURES             Location/Qualifiers
     source          1..2839
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 45.64 cM"
     gene            1..2839
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /note="tetratricopeptide repeat domain 27"
                     /db_xref="GeneID:74196"
                     /db_xref="MGI:MGI:1921446"
     exon            1..262
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             163..2706
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /note="TPR repeat protein 27"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 27"
                     /protein_id="NP_690030.3"
                     /db_xref="CCDS:CCDS28972.1"
                     /db_xref="GeneID:74196"
                     /db_xref="MGI:MGI:1921446"
                     /translation="MPGMMWTPELALLRGFSTEAERLVWKQEGICGSDIGVFLELLLE
                     GSYEALFFHSTTQTILNSTMMAEEKIDSYLEKQIVNFLDCSTDLEEIERQQLVFLLGV
                     SSLQLFVQSNWTGPLVDLHPQDFLPSGLLEQFSEVKGLDAIIMGLLILDGESVYSLTS
                     KPILLLIARIILVNIRHKLTALQSLPWWTLRYVNIHQQLLEERSPQLFALAKNCIDQV
                     MKQENLFEGDSGRLLAIQFHLECAHVFLYYYEYKEAKDQFSTAKDISKLEIDLTGALG
                     KRTRFQENYVAQLIVDVRRKEAVPFSCEFSPAPTPQECLAKNLELNDDTVLNEIKLAD
                     SERFQMPDLCAEELAVVLGVCTNFQKNNPVHKLTEEELLAFTSCLLSQPKFWAIQMSA
                     LILRTKLERGSTRRVERAMRQTQALADQFEDKATSVLERLKIFYCCQVPPHWAVQRQL
                     AGLLFELGCTSSALQIFEKLEMWEDVVICHERAGRHGKAEEILRQELEKKETPGLYCL
                     LGDVLQDHSCYDKAWELSRHRSARAQRSKALLHLRNKEFRECVECFERSVKINPMQLG
                     VWFSLGCAYLALEDYGGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQE
                     ALKCNYEHWQIWENYILTSTDVGEFGEAIKAYHRLLDLRDKYKDIQVLKILVQAVVND
                     MTDRSGAVASSLKGKLQELFGRITSRVTNDGEVWRLYAQVHGNGQSEKPDENDKAFQC
                     LSKAYKCDTQSSCWEKDATAFKEVVQRAIGLAHVAMKCAESKSIPQEAVQTLSSVRLN
                     LRGLLSKAKQNFTDVVSGEVSGELASEIAAVNALEAELQDLSNQLRNRY"
     exon            263..440
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            441..570
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            571..711
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            712..814
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            815..979
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1113
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1226
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1227..1293
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1407
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1503
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1504..1626
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1627..1854
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1855..1953
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1954..2006
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2007..2172
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2173..2370
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2371..2482
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2483..2583
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2584..2820
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2795..2800
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2820
                     /gene="Ttc27"
                     /gene_synonym="2610511O17Rik"
                     /note="major polyA site"
ORIGIN      
        1 atgatgctct gcgttgctgt catggctgcc tccatgcatg tataatctca catgggagtc
       61 taagtttgtg agcgctatcc gtcgtaacaa gacgccggcg actttggacc ctcctcctct
      121 cgtttttctc ctccttagtg ggacactgta tcgggtgcag cgatgccggg aatgatgtgg
      181 acgccggagc tggcgcttct gaggggcttc tccacggagg cggagcggct ggtttggaag
      241 caggagggca tctgtggttc agatattgga gttttcttag aattgctgtt agaagggagc
      301 tatgaggctt tgttcttcca ttcaacgaca caaactattt taaattcaac aatgatggct
      361 gaagaaaaga ttgacagcta cctggagaag cagatagtga atttcctgga ttgctctaca
      421 gatttggaag aaattgaaag acagcagctg gtattcctac ttggtgtgag cagcttgcag
      481 ctttttgtcc agagcaactg gactggacct cttgtggact tgcatcctca ggatttcttg
      541 ccatctggtc tgctggagca attcagtgag gtcaaaggac tggatgctat tattatgggt
      601 ctcctcattc tagatggtga atcagtctac agcctcactt caaagcccat actgctgcta
      661 atagcacgca ttatcctagt gaacatcaga cataaattga cagctctcca gagcttgcca
      721 tggtggacgt tgagatatgt gaatattcat cagcaattgc ttgaggagcg atcacctcag
      781 ctttttgctc ttgccaaaaa ctgtattgat caagtgatga aacaggagaa tttatttgaa
      841 ggtgattcag gtcgactttt ggctattcaa tttcatctgg aatgtgcaca tgtattttta
      901 tattattatg aatataaaga agcaaaggac cagttcagta ctgctaaaga catcagcaag
      961 ttagagattg acctgacagg tgccttggga aaaaggacac gattccagga aaattacgtg
     1021 gcgcagctga ttgtagatgt caggagaaaa gaggctgtcc ctttcagttg tgagttcagc
     1081 ccagcaccca cgccccagga gtgtttggcc aagaatcttg agctcaatga tgatactgtt
     1141 ctgaatgaaa taaagttagc agatagtgaa cggtttcaga tgccagacct gtgtgcggag
     1201 gagcttgccg tggtccttgg agtctgcaca aatttccaga agaacaaccc agttcataag
     1261 ctaacggagg aggagctgct ggccttcaca tcgtgtttac tttcacaacc aaagttctgg
     1321 gccattcaga tgtcagcctt gatcctccgg acaaaacttg agagaggaag cacacggcga
     1381 gtggagcggg ccatgaggca gacccaggct cttgcagacc aattcgaaga taaagccaca
     1441 tctgtactgg aacgtctgaa gattttctat tgttgtcaag taccccctca ctgggctgtt
     1501 cagcgccagc tcgcaggttt gctgtttgag ttgggatgca cctcctcagc cctgcagata
     1561 tttgagaagc tggagatgtg ggaggatgtg gtcatctgcc acgagagggc tgggcggcac
     1621 gggaaggcag aagaaatact taggcaagaa ctggagaaaa aggaaacacc aggtttatat
     1681 tgcttacttg gagatgtcct gcaggaccat tcctgctacg acaaggcctg ggagctgtcc
     1741 cggcatcgca gtgcacgtgc ccagcgctcc aaagctctcc tccatcttcg gaacaaggag
     1801 tttcgggaat gtgtggagtg cttcgagcgc tcagtgaaga tcaatcccat gcagctcggg
     1861 gtctggttct ctctaggctg cgcctacttg gccttggaag actatggtgg atcagcaaag
     1921 gcgtttcagc gttgtgtgac cctagaaccc gataatgctg aggcttggaa caatttatct
     1981 acttcctata ttcgattaaa gcaaaaagtc aaagctttta gaacgttaca agaagccctc
     2041 aagtgtaact acgaacactg gcaaatctgg gaaaactaca ttctcaccag caccgatgtc
     2101 ggggagtttg gggaagccat caaagcttac caccggctcc tggacctccg agacaaatac
     2161 aaagatattc aggtccttaa aattctggtc caggcagtgg ttaatgatat gaccgaccga
     2221 agtggagctg ttgcctccag cctcaaaggc aagctgcagg agttgtttgg cagaataact
     2281 tcaagggtga ccaatgacgg agaagtctgg agactgtatg cccaagtgca tgggaatggg
     2341 cagagtgaga agccagatga gaacgacaag gcattccagt gtctctcgaa ggcgtacaag
     2401 tgtgacacac agtccagttg ttgggagaaa gatgctacag catttaagga agttgttcaa
     2461 agagccatag gactcgctca tgtggctatg aaatgcgctg agagcaagtc cattccccag
     2521 gaagctgtac aaacactttc ttcagttcga ctcaatttac gtggcttgtt atccaaagca
     2581 aagcagaatt ttacagatgt ggtaagtgga gaagtctctg gagagctcgc cagtgaaata
     2641 gcagctgtga atgctctgga ggcagagctg caagacctca gcaaccagct tcgaaaccgg
     2701 tactgactga aaagcagctt gtggcgcagt ctcttctgct ttctccaatt cctccagtac
     2761 ctgtatttct gaaacacaag atacccgttt ttaaaataaa tttgtttgct ggcaaacgtc
     2821 aaaaaaaaaa aaaaaaaaa
//
