LOCUS       NM_172526               2251 bp    mRNA    linear   ROD 06-AUG-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 24 (Ttc24), mRNA.
ACCESSION   NM_172526
VERSION     NM_172526.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 2251)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   4  (bases 1 to 2251)
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 2251)
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 2251)
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K. and Togawa,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 2251)
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 2251)
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC137525.3.
            
            On May 1, 2007 this sequence version replaced NM_172526.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK039884.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849381,
                                           SAMN00849383 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                AC137525.3         82902-82936         c
            36-732              AC137525.3         79453-80149         c
            733-936             AC137525.3         79083-79286         c
            937-1065            AC137525.3         77589-77717         c
            1066-1178           AC137525.3         77355-77467         c
            1179-1277           AC137525.3         76939-77037         c
            1278-1363           AC137525.3         75893-75978         c
            1364-1461           AC137525.3         75663-75760         c
            1462-1552           AC137525.3         74953-75043         c
            1553-2251           AC137525.3         74042-74740         c
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 38.78 cM"
     gene            1..2251
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /note="tetratricopeptide repeat domain 24"
                     /db_xref="GeneID:214191"
                     /db_xref="MGI:MGI:2443841"
     exon            1..35
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            36..732
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             630..1634
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /note="TPR repeat protein 24"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 24"
                     /protein_id="NP_766114.1"
                     /db_xref="CCDS:CCDS17465.1"
                     /db_xref="GeneID:214191"
                     /db_xref="MGI:MGI:2443841"
                     /translation="MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMG
                     YFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLH
                     GSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGA
                     AAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPS
                     APGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQ
                     NRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM
                     "
     exon            733..936
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1065
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1178
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1277
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1363
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1461
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1462..1552
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..2251
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1843
                     /gene="Ttc24"
                     /gene_synonym="A430025D11Rik"
                     /note="major polyA site"
ORIGIN      
        1 agaaggccac tgtggagaaa acaggacaga cagaggatag ccactggaag cttgagactg
       61 tgccaaaacc ctcaaactgc aggaagaaaa aggagaaaaa gaagaggctg caagaagaag
      121 ccaagatccg gagcctcacc agggatggcc acagggcctt gcatgctgct cagattcagg
      181 aggccttggg cagcttccag aaggccttcc tgctggcctc caaggcccca tcaaccagag
      241 acagctccat tcttcaagcc tgtgccttta acttaggggc tgcctatgtg gagactggag
      301 acccagccac aggtcttgag ctacttctga gagcccaccc tgaagagaag tccgaaggct
      361 ggtgtcatgg tgaccagtgc ttcaatgtgg ctttagccca tcacgccctt ggtgacctga
      421 ctcaagcttt ggactggtac cacagggctc tggtccatta ccaaccacag ggctaccatg
      481 gggaggcaca ggcaaaaata ggagcctgct atcaggccct gggatggcct aagcaagcag
      541 cctgcagttt acaggaagca agccaggcct atgcccatgc aggccagctc tgggatgcag
      601 ccttggctca ggtggctgcc gtgagatgta tgctgagcag tcggcagtat ggactgagtg
      661 atgtgctgcg ggctctggag gagagccgca agcttgctga tgctgaccgg agcaccgacc
      721 agggactgct agggccattc tacaatgatc taggcatggg ttacttccaa ctccaactgt
      781 tccctctggc agtagaggcc ttcctgcagg ccctacccct gtgtcgacag ccatcagagc
      841 aggctacagt gcttcaaaat cttggaatga cccacaatgt ccttggcaac tattgggaag
      901 cccaggagtt tcaccagaag gctgcaagtc tgcatggctc tgtgggccag cggtgggagc
      961 agggtcgcag ctttagcggc ctggcatttt cactgagcca gctgggggac cacagggctg
     1021 cctgggacag ctatttgcat gccctccagg ctgcccaaga cactggagac gtgaagggac
     1081 agtggcaggc gtgtgagggc cttggggcag ctgcagccag actgggacaa catgaccagg
     1141 ccttgaaata ctataaggaa gcgctggccc tgtgtcagca cgaaccaagt tctgtacgag
     1201 agcggcttgt ggccaaattg gcagatgcca tgcggacctt cgtggctcag gagaagatag
     1261 cccaggctcg tttcttgccc tctgctcctg gaaagctgca gacttcacgg aaggcaaaga
     1321 cctcagccag ggtacaaagt agtgcagaag atgcccagga gagtcagtgg gaaggtgaag
     1381 cgtcagaagg cggccatgag aagaaggaga tggaggggtt ggtgaacacg gccactgtgt
     1441 taggacctca gagacagaac cgagccacaa cccatcttcc atctggaggc ccaagtccca
     1501 gtggagagga atatcccttc atcatagcac ccaagaagct ccgagtcagt aggtcatcca
     1561 catgggccaa ggaagccctc ggcaggaact tccagaggac acgcatccag tccggcctct
     1621 gcagcatcat gtgatctata cctgctggct acagcactta cctctacagg aacttcccga
     1681 tagacacttg tatgggcttt ggggaggagc ctctttagcc ggtatggaca aggtgctcct
     1741 gaacagacag gccaaggact ctgctggctt ggcattgaga gtctctttgc tcttctttgg
     1801 gggggacttg aactcagtag acaaacgaaa actgggaaac gaatagtgag cactgtccct
     1861 tgcttttctg gattgggacg tcatgactgt taaaacgttt tgccagttct aaaaatgact
     1921 tcctagctca ggtgactttg gggtcactga gcttctccat gtccccttct catgttggag
     1981 acacgaatgt catacaacag aagataagag ggcacacact ccagttactg tcccccatga
     2041 atacccaaag tcacacaata accgtgataa tttttcgaca tttttcgagc atgcttcaca
     2101 ccctgaacac ttataggtat ttcctcacag gagtgcggga ggaaaagaga tggctgggca
     2161 cagtgacacg ggcctatgat cctaaagctc agagagggca ggaaggtcac cgcttcaagg
     2221 ccagtctgag ctacatagca agatgtatct c
//
