LOCUS       NM_001378877            1556 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus tetratricopeptide repeat domain 23-like (Ttc23l),
            transcript variant 3, mRNA.
ACCESSION   NM_001378877 XM_006520194
VERSION     NM_001378877.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Hansen,G.M., Markesich,D.C., Burnett,M.B., Zhu,Q., Dionne,K.M.,
            Richter,L.J., Finnell,R.H., Sands,A.T., Zambrowicz,B.P. and
            Abuin,A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158921.17 and AC102101.7.
            
            On Mar 12, 2020 this sequence version replaced XM_006520194.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.139652.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849380 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                AC158921.17        162194-162268
            76-147              AC158921.17        163210-163281
            148-331             AC158921.17        169281-169464
            332-455             AC158921.17        173577-173700
            456-612             AC158921.17        180832-180988
            613-738             AC158921.17        183202-183327
            739-916             AC158921.17        187055-187232
            917-1025            AC158921.17        190164-190272
            1026-1150           AC158921.17        197166-197290
            1151-1294           AC102101.7         8053-8196
            1295-1377           AC102101.7         13888-13970
            1378-1478           AC102101.7         21093-21193
            1479-1556           AC102101.7         23105-23182
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 5.35 cM"
     gene            1..1556
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /note="tetratricopeptide repeat domain 23-like"
                     /db_xref="GeneID:75777"
                     /db_xref="MGI:MGI:1923027"
     exon            1..75
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..1453
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /note="isoform 3 is encoded by transcript variant 3;
                     Tetratricopeptide repeat protein 23-like"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 23-like isoform
                     3"
                     /protein_id="NP_001365806.1"
                     /db_xref="GeneID:75777"
                     /db_xref="MGI:MGI:1923027"
                     /translation="MARAPAQARGSRGLNCLARKMQANPICIPTVSNDADWDFCFHLS
                     QQTGIPAQETDDLFSTCYCEETEEDTAHQEAGMTVDCLSIPKKKLAQSQKKINQFINS
                     KMSTKANKELIRCFILSQIVFGKEHWKCAQALANLAYGYLTLRGLPAQAKKHAEKARN
                     TLLTWKRNTTSDKDKKEILETLVRLYYTLGVAWLLQNHGKQAYIHLQKAERNMKELKE
                     LNNGNICGIQVSEKDLTIALGRASLAMHRMNLALAYFEKAICDVILDKGHNTSELISL
                     YEEIAQIEQLRKNHKQAIQYLQQAYSICVSSFSEVSPQTAEASALLAKAYAMSGASEY
                     RDAVEIYFIRSISTYQTLGSEDYETLTAIEDFCTWLIENGEKQEAYRLLKSTLNSGNF
                     GDCGKKVAETFYNMGSICFAKGELGEAIELLSKCLMIQSLVYGSEHIKSIETKSLLSL
                     LQRASLSRWKKVAAPGKKKSACRDRME"
     exon            76..147
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            148..331
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            332..455
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            456..612
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            613..738
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            739..916
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1025
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1150
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1294
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1377
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..1478
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1479..1556
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1528..1533
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1556
                     /gene="Ttc23l"
                     /gene_synonym="4930401A09Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcttcagcg agactcctca tggcccgggc acccgcacag gcccgaggta gcagaggtct
       61 gaactgcctg gcccggaaga tgcaagccaa ccccatctgc attccaactg ttagcaatga
      121 cgccgactgg gacttctgct tccacctgtc acagcaaact ggaatcccag cacaagaaac
      181 agatgacttg ttctctactt gttactgtga ggagactgag gaagacactg cacatcagga
      241 agcggggatg accgttgact gtctgtctat tcccaaaaaa aagttagctc agtcccagaa
      301 gaaaattaat caattcatta acagcaaaat gagcaccaaa gcaaacaagg agctgattcg
      361 gtgtttcatc ctctctcaga ttgtttttgg gaaagaacat tggaaatgtg cacaggcttt
      421 agccaacctg gcgtatggtt acctgacact gagaggcctc ccagctcagg ccaagaaaca
      481 tgcggagaaa gccaggaaca cactgctgac ctggaagcga aatacaactt cagacaagga
      541 taagaaggaa atcctggaaa ctctggtcag actctactat actctggggg tagcctggct
      601 cctacaaaac catggcaaac aggcctacat ccacctgcag aaagcagaga gaaatatgaa
      661 ggaactgaaa gaattaaaca acggtaacat ttgtggaatc caagtctcgg agaaagacct
      721 aaccattgct ttggggagag cctccttggc tatgcacagg atgaacctag ccctggcgta
      781 ctttgagaag gcaatctgcg atgttatcct tgacaagggt cacaacacgt cagagctgat
      841 tagtttgtac gaagaaatcg ctcagatcga gcagctgagg aagaaccaca aacaggccat
      901 ccagtacttg cagcaggcct attctatctg tgtttcttcg ttttctgaag tcagccccca
      961 aactgctgag gcgagtgctt tactagcgaa agcgtatgcc atgtctggag catccgagta
     1021 cagggatgcg gttgagatat attttataag aagtattagt acataccaaa ctctgggctc
     1081 agaagactat gaaactctta ccgccattga agacttttgt acgtggctca tcgaaaatgg
     1141 tgaaaaacag gaggcttaca gacttctaaa gtctaccctg aattctggca actttgggga
     1201 ctgcggcaaa aaggtagctg aaacctttta taacatgggc agcatctgtt ttgccaaggg
     1261 agaactcgga gaagcaattg agctactgag caagtgtctg atgattcaga gtcttgtcta
     1321 tggaagtgaa cacattaaga gcatagagac taaaagcctc ctttccctat tgcagagggc
     1381 aagtttatcc agatggaaaa aagtagctgc tccaggaaag aagaaaagtg catgcagaga
     1441 cagaatggag tgaaggaggg cgatgcccag gacgaaagat cttgagagtg ttatcaggga
     1501 ctggaaactc tacataagat agacaacaat aaagacaacc ttgttgctaa ccagaa
//
